mRNA_E-siliculosus-1a_F_contig10775.542.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10775.542.1
Unique NamemRNA_E-siliculosus-1a_F_contig10775.542.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.610e-15
Identity = 43/74 (58.11%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   43 MKGGAAQ-SSQISANALPDVGGGSRGICRCSRRAYQGGEQQQGFFAGGWEEPEFTWQWREDPTLLRPTKSGWYL 261
            MKGGAAQ SSQISANALPDVGG +           +     + F AGGWEEPE  WQWREDP   R  +SGWYL
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGGWEEPESAWQWREDPRQDR--QSGWYL 72
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BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.750e-13
Identity = 39/63 (61.90%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:    3 GGQRWAFRLGGSPDEGGSCT-VITDLRQRASRCRGGQPGHLSL*SARLPGWRAAAGFFCGWVG 188
            GGQR  FRL GSPDEGGSCT VITDLRQRASRCRGG  G          G     GFF   VG
Sbjct:    3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVG 65
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BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.640e-9
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 3 
Query:    3 GGQRWAFRLGGSPDEGGSCTVITDLRQRASRCRGG 107
            GG    F LGGS DEGGSC+VITDLRQRASRCRGG
Sbjct:    5 GGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGG 39
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGJ8_ECTSI2.610e-1558.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LR06_ECTSI5.750e-1361.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB56_9PHAE2.640e-980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10775contigE-siliculosus-1a_F_contig10775:1924..2187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size264
Model size264
Exons1
Ec32 orthologEc-01_009300.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927578.6442797-CDS-E-siliculosus-1a_F_contig10775:1923..21871622927578.6442797-CDS-E-siliculosus-1a_F_contig10775:1923..2187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10775 1924..2187 +
1696318594.8809464-CDS-E-siliculosus-1a_F_contig10775:1923..21871696318594.8809464-CDS-E-siliculosus-1a_F_contig10775:1923..2187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10775 1924..2187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10775.542.1prot_E-siliculosus-1a_F_contig10775.542.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10775 1924..2187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10775.542.1

>prot_E-siliculosus-1a_F_contig10775.542.1 ID=prot_E-siliculosus-1a_F_contig10775.542.1|Name=mRNA_E-siliculosus-1a_F_contig10775.542.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp
RGGSAGLFGWAVLQMKGGAAQSSQISANALPDVGGGSRGICRCSRRAYQG
GEQQQGFFAGGWEEPEFTWQWREDPTLLRPTKSGWYL*
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mRNA from alignment at E-siliculosus-1a_F_contig10775:1924..2187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10775.542.1 ID=mRNA_E-siliculosus-1a_F_contig10775.542.1|Name=mRNA_E-siliculosus-1a_F_contig10775.542.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10775:1924..2187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGGGGGCAGCGCTGGGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAG
GGGGGGGCAGCCGGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAGGGT
GGCGAGCAGCAGCAGGGTTTTTTTGCGGGTGGGTGGGAGGAGCCGGAGTT
CACTTGGCAATGGAGAGAAGACCCCACCCTGCTGAGACCGACAAAATCCG
GTTGGTACCTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10775:1924..2187+

>mRNA_E-siliculosus-1a_F_contig10775.542.1 ID=mRNA_E-siliculosus-1a_F_contig10775.542.1|Name=mRNA_E-siliculosus-1a_F_contig10775.542.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10775:1924..2187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGGGGGCAGCGCTGGGCTTTTCGGTTGGGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACAGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAG
GGGGGGGCAGCCGGGGCATTTGTCGTTGTAGTCGGCGCGCTTACCAGGGT
GGCGAGCAGCAGCAGGGTTTTTTTGCGGGTGGGTGGGAGGAGCCGGAGTT
CACTTGGCAATGGAGAGAAGACCCCACCCTGCTGAGACCGACAAAATCCG
GTTGGTACCTGTAGAGGGGGGGCAGCGCTGGGCTTTTCGGTTGGGCGGTT
CTCCAGATGAAGGGGGGAGCTGCACAGTCATCACAGATCTCCGCCAACGC
GCTTCCAGATGTAGGGGGGGGCAGCCGGGGCATTTGTCGTTGTAGTCGGC
GCGCTTACCAGGGTGGCGAGCAGCAGCAGGGTTTTTTTGCGGGTGGGTGG
GAGGAGCCGGAGTTCACTTGGCAATGGAGAGAAGACCCCACCCTGCTGAG
ACCGACAAAATCCGGTTGGTACCTGTAG
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