mRNA_E-siliculosus-1a_F_contig1077.539.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1077.539.1
Unique NamemRNA_E-siliculosus-1a_F_contig1077.539.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1077.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1077contigE-siliculosus-1a_F_contig1077:12641..19339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size342
Model size344
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1077.539.1prot_E-siliculosus-1a_F_contig1077.539.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1077 12641..19337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927578.457235-CDS-E-siliculosus-1a_F_contig1077:12640..127071622927578.457235-CDS-E-siliculosus-1a_F_contig1077:12640..12707Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1077 12641..12707 +
1696318594.769579-CDS-E-siliculosus-1a_F_contig1077:12640..127071696318594.769579-CDS-E-siliculosus-1a_F_contig1077:12640..12707Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1077 12641..12707 +
1622927578.470146-CDS-E-siliculosus-1a_F_contig1077:18497..185751622927578.470146-CDS-E-siliculosus-1a_F_contig1077:18497..18575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1077 18498..18575 +
1696318594.7854724-CDS-E-siliculosus-1a_F_contig1077:18497..185751696318594.7854724-CDS-E-siliculosus-1a_F_contig1077:18497..18575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1077 18498..18575 +
1622927578.4795275-CDS-E-siliculosus-1a_F_contig1077:19140..193371622927578.4795275-CDS-E-siliculosus-1a_F_contig1077:19140..19337Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1077 19141..19337 +
1696318594.798877-CDS-E-siliculosus-1a_F_contig1077:19140..193371696318594.798877-CDS-E-siliculosus-1a_F_contig1077:19140..19337Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1077 19141..19337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1077.539.1

>prot_E-siliculosus-1a_F_contig1077.539.1 ID=prot_E-siliculosus-1a_F_contig1077.539.1|Name=mRNA_E-siliculosus-1a_F_contig1077.539.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
HYTSDCTGSRRTHCADDHLQPVAQWNTGDEKENRSSDNDQAEDFLPSHDT
LTMHIREAVAMGNWREVQTLMAGASETDRNAVLRAPYGGARSGLHDGTTP
LLHAARCKGPETFE
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mRNA from alignment at E-siliculosus-1a_F_contig1077:12641..19339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1077.539.1 ID=mRNA_E-siliculosus-1a_F_contig1077.539.1|Name=mRNA_E-siliculosus-1a_F_contig1077.539.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6699bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1077:12641..19339+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACTACACTAGCGACTGCACCGGGTCACGACGAACTCATTGCGCGGACGA
CCATCTACAACCTGTCGGTGAGGAACACAAGAGCAACAACATTTCGGCAT
GTGTCACTCCCGAGAACGCAACCGGCTCGATCGTGGATGCCCCTTGCAGC
AACAGCGACAAATCAATGGCATTTACAAGCTCGTGGGAATCGCACCAAGA
GCCCGCCCCACAAATAGGCCGGCCTCCTCGATCGAGCTCGTCTACCGCAC
ACGTCCACCGTGGATTGGGCAGGGTAGGCGCAAGTGATACTGCAGTTCTC
AACAGTGCGGTCGACGGGAGTGATGGTGGTGGCGTCTTATCTGGGTTGGA
GGCCCGTATGCCCGGTGCATGTTCCACACCGCCGGAGTTGAGACAGGTAG
ATGGGGTTCCAGAGGAGGCCGAGGATGACATTGTTGCCGCAGCAGACTGG
TTGGATGTTCATGACATGTTGGCTGCACTTGGTAGCAAGAGTCTGGAGCT
TTGACTTTCGCTACATAATTTGGTTGCTTGTGCCAACCTTTGATGCAGGT
TACGGATATTGAGTGTGTATGACAGCGGTGTTTTGAACGTGGGATATTTG
ACCTTGTTGGTAGAACAACCGTACACATCATGTTTGTTTGGCACAAAACG
GGACGCCTAAAAAACGCCACAGTGGTTGAAACCCAAGAGGCGGTCCCGCT
CCGACAAAAAGGACACGAAGAAACGCCGCAGACGGTCATGCCCGCGAAGC
AGCCCCGCAAACCAAAGGGCCATGTGAAATAAGTCCTCGGTAGTCCAGCG
AAAGGTAAAAGTAACGGTTGTGGTTCGCCGGTGTCCGTAGTTTGTTATTG
TTGAGGCAAAATCGGACAATTCAGGGTCTTGTGCTCCTCACCTTCCCTCT
CTGCCAGCTAGACCCAGCTTCATCTGCTTTGTAGTGTCGGAAACATATAT
ATGTATGTGTCATCACGTGTGCTGCTGCCTAGATCCACACGTCGTCCACC
GAGTACTTCAGACACACGTACGATACGCGATATGGTGTATCGAGAGTTAT
CCCTGAAAAGAAGGGGGAGCAGGAGATCTGCGCGCTTGAAACCAGCGAAC
TTTTGTCGTTGTTCTTTCGCGGAAACTCTGCGAACACGCTGTAGGTCATG
CGTCCAATCTCCCACGCTACCGACAGTTTTGTCAAGTGCCCCATGGGGCA
CCGATGGACTGCCCATGGGTGCCCCATGGGTGCCCCATGGGGCGCCCATG
GGGCCGCCCATGAGCTGCCCATGGGTAGTCCATGAAGTGCCCATCATGGG
CTGCCCATGAGCATGCTCATCATGGACGGGCTGCCCATGGGCAGCCTATG
GGCAATGGGCCGCCCATGGGCAGCCCATGATTTTGACAAAACTGGCGGCC
GATTCAGTGAATTTTTGACAGTTTCGTTCTTTCTGGCGGCCGATTCCTCT
CCAGCGCCCTCTCCCTGTTCCGCATTCCGAGCACGCGGCTGAGCCGCATG
CTCGCCCAGTCGCGGCCGCTAGGCCGTGCTTTGGCCGTGGGTAGGGGTTA
GGGTTAGGGTTAGGGTTAGGGTAGACCTAGCCTTGCTCGCGTGAAGAACC
TAGCCTTGCTACGTTCAACATCGGTTAGTCCTAAAGAGTTCTACCAATGT
GTAACCAAGGCTCCCACGATGGGCTGCCCATCCACGGTAAGCTGCCCATG
AGCTGCATGAGCTGCCCACGGTGGGTTGCCCATGGTGGACCGCTCATGGG
CAGCCCACCGTGCCCACGGGCCGCCCGTCATGGGCATTTTGGGCATGCCC
ATGGGCATGCACACAAGCGACCCACGGGTGCCCCATGGGCCACCCATAGG
CGGCCCATGGGTCAGCCGTGGGCTTGCTCATGGGCATGCCCATGGGGCGC
CCATTCGGCACCCATGGGTCACCCATGAGCCTTTTGTTGCCCATGGGTGC
CCCATGGGGCAGCCATGGGCGGCCTATGGGGCACCCATGGGCCGTTTGGG
AAAAATTAAGTGTGTTCGAGACCCCATACGTCGGGCTTCTATGAAAGTCC
AGGGTCGTTTTATTGGGTTTCCTTGTACCCCACCACAACAGAGCCTAGCA
GGGGTACAAGCAAACAACTTCAGGCGCTTGTTATTTTTTTCCCTTCGGTC
ATCGTTGATTTATATATATGTTAGATCTGCTCTTGTTCGCGTGTCGAGCG
GGAGCAATGGGCTCTCTTTCTTTTTACTAATTTTTTTGTTTCTTGTATTG
CCTACGCGCCCGTGCCCCGGGTTATTTGTTGCGATCTGCTGTGTATGGAG
ATTGTTTCAATATTTCCTGAGGCCTTTGTTATTTATTTCTGTTTTGAGAT
ATTCAAGTATGCTGTACCTTTGCGGTAGCTTGTATGCATAGACTAATCCT
GCAGAAAAATGTTCTTTGTCGGCTCTCGTGTTGCTTATAGATGCCGTGCA
GTCTGCCTCGCGAATTGCTCAAAGCCACGCCTGTTGGGTCTTCGAGAAAG
TTCTATGTAGCTGTCATCTGATGGCGCAGGTCATCATCTGTTTTGGCACA
GGGCCGACGTAATTTTGTCGTCATTCGAGGAAGTCTTGCAAAGATCAATT
CCCCCGCAAGATTCCACGGACTCCGCGGAAAATCATTTTTTTTTTTTTGA
GATAATCTTCGCCGAACAGCTACCGTCGGACGGATCTTCTCGCATAATAT
TGCTTCAGCGACGAAAATCACCACTGGAACCTATCAAAACAAAAGTAGTT
ATTGGCGCTCTGCAGACACATCGGATCATCATCGATGATCCCACTTTTCT
CGAAAATGAACATGTACTGAAGTTCGGAGTCATTTAGTTCGTGAGGCAAA
CTGAAAAGAAAGGTATTCGGCGAATGAAAATCGAAATTAATTGTATTTTT
CGCCGTCGTTGTCGGTACATTTTTCCGCGCCGCGTCCATCTCGGCCACAT
CCACCAGTGCAGACCCTACTACTCTCTTTCTCTCTTCTCCTCGCAGAGAG
GTGCAGAGTTTTTTCGGCTCGAAACGTGCGCCGCACTACAGTCCCGCTGC
GTGTGTCTGTCTGTGCTTTGTGGGCGAGCGTACAACTATGAGAGGTATGT
GTGTGCAGATGCGAGGGAGAAGAGTGTTGTTGTCTTCACAATACAAAACC
GTTCTGATGGCTCCGTCCAGTACCTACCTTCGTCGTTCGAATCTACAGAG
TAACATCCTACGCGGTCCGTGGTCATGTAGCTATTGAACGGTAACAGACG
AACCGGTAGTTTGTACGGAGGAGCGCAATTGCGACTCTCTCGGAATTGTG
ATACTCCCATGTCGTGGACGCTGGCTCACGTTCGCGTGGTGCGGGGTTGG
TTCCAAGGTGTAACGAGTTCTTCGGCGTTTTCGACAACCTGATTTTCGAT
TTGTACGCATAGTATAATGTGTAGATGGTGCGCACATGTGCATATGCGCA
TGTTATTTTTCCGCGCCGGGCCGACAATACATGCATATGATCTATGTTTT
TCGGGAGAACTTCCTCGCCCCTCTTTGTACATGGATGGATGTCGGTGGGA
TTTCTCGACATACGCAGGCACCACGTAGGACGGCCGGCGTGCTAGTTAGG
AGACACACCACTCGGCCACGAGAACAGAGCAAAAACAGATGATAAACACT
GCCTGGAGGCCGGGAGCAATAAATCAAAAACCGAAAAAACAACGGAAATA
AACCAACCGAAACAAATGGTTGCACCAGCTCTCAGCAGAGTATGCGTTAT
GACGTCTGACGCGCTCCGGAAAAAGATGTTACACCTATAATGTAAAAGGC
AACTCAACAACACCCTGTGTGAACAGCGTACACAAGCACTACACCGTTGG
CCAATTGGCTTCCTCACTGGTTCCCTTCTTTCGAGGTCGTTTGTTTTTTC
CTCCCGTTGGACAACTTATAGACTAATCGACGACGTGAACAACTACAAGA
AGTGATTGGCTGCGGATGCAAATCCCTACAGCCAGTCGACCGGGATTGCT
CTGTTGTCTGAAAAAAGAACCCCGGCGGGGGGCTTGTACGCTATTGTCCC
AGGTATCCATCCCAGTTCTCGACCTTTTTCATTATAATCCCCCAAGTACC
TCCAGTGCCCACTCATATTTCACATCAGTCGATTCCTGGTCATTCCTACA
TACACCCATCATATTCCGTCCAGAATGTAGCAAAAGTGTTGTTGATCATC
GCACCACCTCCTCAGCGGTTTTCTCCCAGCTCTATATGAATCCAGAGGGA
GATCGATGTCGACACGTTGATGAAAATCCCTCACTGTCCTGCAATACCCG
AAGAGAATGCCATGCACACGTAGATCTACAAGAAACTCTGCACAATCACC
ATCCGTCCTCGAAAACACTGAAGTATTCGTGGGTCGTTGGTAACTTCTCA
ATCTATCAAAGTATGACGTTGGATTTTGAAAATTGCTCATCAATCTCACA
AACGGATTCATCACATCTCACATATGTGTACTGTACATCTCTCCAGGTTC
CAACGCTGGATCGAGTTTGCTTCAAAACTTTGAACACCATCCATTGGTCC
GTTCGGGATCAGTCGGTATGTTTATAGAAGAAGCGTTGCCTTCGTGCTGG
GGTGTTTTCGCCATCGACAAAGTAAGTTGCCCTTGGAATTCTCCGATACC
ATTCACTATCTCGTCGACCGAAACGTCACCACCTTGATAATAGCAGGTTT
CCGCCGGACGAATCGCCCTTTGAGTTTCGACGCCAACAGATATTCAACCC
GCCGGACACATCGGCTCATCGTTTTAATTGTTTCAACACGCAAAGTTAAA
TACCTCTAGACTATACAGTATATCTGCAAGTGCTACGTGTGTTTCGGGTC
TCCCACACTTTTTACAGTTTTCCCAAACGACCCATGGGCCGCCCATGGGC
ACCCCGTTAAGCCCATGGGCGGCCAATGAGAGCCCTTCAATCGAACCAGT
GTACTCCAAGACAGTAGATTGTCTGCTTTGTTTCGAACATGCACATAGCG
GCTAGTAACCCTAACGCTAACCGCAACTATATCCCCAAACCCACACGATA
TGTGCTAGGTTGGCGCTGGTGGCTATGTTGTAGGTTGGGTTAGACGGTGG
TTAAGTTCTAGGTTGATATGCCGGTGGCGAAGTTCTAGGTTGAAGTGCCC
ATGGGCGGCCCATGGGTGACCCATGGGTGTCCCATGGGCGGTTTGACACA
ACTGTCCGTAGTACATTTCACATTGATTGGCACCTCGAACCATGGGATTT
CGCGTGAGACTTCCCTCTGGGACGCCTGATTCGCTCCCCCCAGAGGTTTG
TTTCCCTTCCCGCTTCCCTCAGCCTCGCGTTGCTGCGCACGTCACCATTA
CGTTCATTTGTTTGTATTCGCCTGACTGTGTACGGCCGGCACCAGTATTG
GCTACTACTGGAAGACCCACATAATGGTGCAAATGCACAGGTGGTTCTCT
CAGGGCCCCTGCTCCCATTGCGTTAGAGGTTCAAACGAACAACCAGCAAG
CGCGTGGCCTGGTCACAGACGGCATTGCTGAAGATGGAGGTACGCGACCG
TCCGTCGAATACCGAGGGAACGGGGCGTGTGTATCTGCCGTCAAATGACC
TTGACCTACATTTAATGCAAACATATCAAATGCCACCGCTGACGGAAGAT
ATTCTTCGTCGTCGCCATGAAAAAGTAACCCGTACGACGTAGGCAGAAAA
CGCCGTCAATACGTGACTGGTAATTCAGTATGTATAGTGATCATCTCAGC
CGCTCATATGGCGAGCGTGTGCATACTATATCTACCCTGTGCACTACTGC
GCGATTCCTTCTTACTCGATCCATTCCATTCGTCGGGCGCTCCCCCTCCC
TCGATAGCCCAGTGGAACACCGGCGACGAAAAAGAGAACCGCAGTTCCGA
CAACGACCAGGCCGAAGACTTCCTTCCCTCACATGGTACGTACAATATTA
GGGTGGAAAGCGTGGCTTAATTTTAGCAGAGCACGTGATAAGTGGCCAAT
GGTACAGAGAATAGTACCGAGCGGTGTCCGCATTAGCCTTTGGTGATACG
TCACCCTTTACTAAGATGGAACAGTCAAGTCATCCCTACAGTGCTCTCCG
GCCTTACCACGCCGCTTCACAACTAAAGAGTACCAGAAGGAGAATTGTGA
GCACGGCAACGACCCTACATGGCCGACACAGAGCATCCAGGACACGTTCG
CTCATTCATTCCACAGCTGTCTCCAAAGGGCACATGCATCCCGAGAACTT
GCGGAATTACTCTGTGCGCAAGACGATTCTGGGTTCAGGCATCCCACGCT
GGATGGACTAAATGTAGGTTGGACGCTGTGCTGCCAGAGACATTGCAGAG
GCAATTTGCATGCTACGCCGCCACACCTCCGCGCTTTGTGCCCGTCTCTC
CTCTCGAGCCCCCAGCGTATAGATTAGGCCTTTACTGCTCACGACTGCAA
CGCCTGCTAAAACTCGCCCCCCCGCGACAATGTATTGTCCAAATTTGCAG
ACACTCTGACGATGCATATTCGTGAAGCAGTAGCCATGGGAAATTGGAGG
GAAGTCCAAACTTTGATGGCTGGGGCAAGCGAGACGGACAGAAATGCTGT
TCTCCGGGCACCGTACGGTGGAGCACGAAGCGGCCTTCACGATGGAACCA
CTCCGCTCCTGCACGCAGCAAGATGCAAAGGACCGGAGACGTTTGAGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1077:12641..19339+

>mRNA_E-siliculosus-1a_F_contig1077.539.1 ID=mRNA_E-siliculosus-1a_F_contig1077.539.1|Name=mRNA_E-siliculosus-1a_F_contig1077.539.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1077:12641..19339+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACTACACTAGCGACTGCACCGGGTCACGACGAACTCATTGCGCGGACGA
CCATCTACAACCTGTCGCACTACACTAGCGACTGCACCGGGTCACGACGA
ACTCATTGCGCGGACGACCATCTACAACCTGTCGCCCAGTGGAACACCGG
CGACGAAAAAGAGAACCGCAGTTCCGACAACGACCAGGCCGAAGACTTCC
TTCCCTCACATGCCCAGTGGAACACCGGCGACGAAAAAGAGAACCGCAGT
TCCGACAACGACCAGGCCGAAGACTTCCTTCCCTCACATGACACTCTGAC
GATGCATATTCGTGAAGCAGTAGCCATGGGAAATTGGAGGGAAGTCCAAA
CTTTGATGGCTGGGGCAAGCGAGACGGACAGAAATGCTGTTCTCCGGGCA
CCGTACGGTGGAGCACGAAGCGGCCTTCACGATGGAACCACTCCGCTCCT
GCACGCAGCAAGATGCAAAGGACCGGAGACGTTTGAGACACTCTGACGAT
GCATATTCGTGAAGCAGTAGCCATGGGAAATTGGAGGGAAGTCCAAACTT
TGATGGCTGGGGCAAGCGAGACGGACAGAAATGCTGTTCTCCGGGCACCG
TACGGTGGAGCACGAAGCGGCCTTCACGATGGAACCACTCCGCTCCTGCA
CGCAGCAAGATGCAAAGGACCGGAGACGTTTGAG
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