mRNA_E-siliculosus-1a_F_contig1076.534.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1076.534.1
Unique NamemRNA_E-siliculosus-1a_F_contig1076.534.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: D7G7U8_ECTSI (Thylakoid lumenal 15 kDa protein, chloroplast (P15) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U8_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 4.840e-130
Identity = 239/247 (96.76%), Postives = 240/247 (97.17%), Query Frame = 1 
Query:    1 MATMIMKGLVVSAGVAGVAGFVPPSAGRSTAWRGHQVKMNLFNDAARCVPAVLLGVALTTSAPLLDSPATHTHTAVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP 741
            MATMIMKGLVVSAGVAGVAGFVPPSAGR TAWRG QV MNLFNDAARCVPAVLLGV LTTSAPLLDSPA HT  AVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGL+TAKGTNPVSGVDTRDSLGCP
Sbjct:    1 MATMIMKGLVVSAGVAGVAGFVPPSAGRCTAWRGRQVTMNLFNDAARCVPAVLLGVTLTTSAPLLDSPAAHT--AVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGCP 245
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A835YUD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.610e-46
Identity = 116/160 (72.50%), Postives = 131/160 (81.88%), Query Frame = 1 
Query:  259 KGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
            +G SSVSD+K+  GAAST D G+RK +TRGVN+ENAD+H KD+S VSFQQSLVRGTNF ++KL+ +GFFDA     XXXXXXXXXXXXXXXXXXXXXXXXX     YVSGATK EP  IEGADFTDTFLRKDQ+ YLC +  AKGTNPV+GVDT DSL C
Sbjct:   75 EGASSVSDTKMLSGAASTLDTGSRKIITRGVNLENADFHGKDMSGVSFQQSLVRGTNFASSKLIGSGFFDADLSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATKFEPKDIEGADFTDTFLRKDQIMYLCAI--AKGTNPVTGVDTADSLSC 232
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S2CVZ3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVZ3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.520e-32
Identity = 107/175 (61.14%), Postives = 128/175 (73.14%), Query Frame = 1 
Query:  226 VLGASPVFAD-DKGMSSVSDSKLSVGAAST--GDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP 741
            +L A+P FA+ D G S+V ++K+  G AST    +GARKT+TRGV ++ A++  +DL+ VSFQQS +RG  F+  KL+ A FFDA   XXXXXXXXXXXXXXXXXXXXXXXXXXX        GAT  + A IEGADFTDTFLRKDQ + LC   TAKGTNP +GVDTRDSL CP
Sbjct:   36 LLSATPAFAESDGGASNVENTKIMNGGASTIVNQRGARKTITRGVQLDKANFAGEDLTGVSFQQSQIRGGVFEKTKLLGASFFDATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATSFKDAKIEGADFTDTFLRKDQQKELCA--TAKGTNPTTGVDTRDSLMCP 208
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A448ZI41_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI41_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.600e-27
Identity = 81/167 (48.50%), Postives = 108/167 (64.67%), Query Frame = 1 
Query:  241 PVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPA-IIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
            P FAD +G ++ S++K++ G AST   G    +TRGVN++N+++  ++L  V+FQQS+VR +NFK A  V       XXXXXXXXXXXX                  ++ E YVSGAT  E    IEG+D+++TFLRKDQ +YLC   TAKGTNPV+GVDTR+SL C
Sbjct:   68 PAFAD-QGATAASNAKITTGGASTLQSGRTIAITRGVNLDNSNFXGQNLKGVAFQQSIVRDSNFKGANXVXXXXXXXXXXXXXXXXXXXTLSNVEMAQFNRANLKNTVMKEVYVSGATLFEGVKSIEGSDWSETFLRKDQQKYLCEHPTAKGTNPVTGVDTRESLMC 233
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: W7U2G1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2G1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.540e-27
Identity = 95/154 (61.69%), Postives = 116/154 (75.32%), Query Frame = 1 
Query:  280 DSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP 741
            D K+  G+AST + G  KT+TRGVNIENA++  KDL++VSFQQSLVR  NF+ AK ++A FFDA   XXXXXXXXXXXXXXXXXXXXXXXXXXX     YVSGAT++    IEG+D++ TFLRKDQ  YLC    A G NP++ + T++SL CP
Sbjct:  171 DFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLC--KRASGVNPITKISTKESLLCP 322
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S0TH33_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TH33_HEMAN)

HSP 1 Score: 112 bits (280), Expect = 7.840e-25
Identity = 95/151 (62.91%), Postives = 111/151 (73.51%), Query Frame = 1 
Query:  286 KLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
            K+  GAAST D G+R+T+TRG  ++N+ +  + L  +SFQQSL R  +FK A L  A     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+V EAY+   TK++   IEGADFTDTFLRKDQ RYLC    A GTNP +GVDT DSL C
Sbjct:   89 KVLQGAASTQDSGSRRTITRGATLDNSRFDGQKLDGISFQQSLCRDCDFKGASLKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVNEAYILATTKLDGINIEGADFTDTFLRKDQQRYLCSR--ASGTNPKTGVDTYDSLLC 237
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A4D9CRG8_9STRA (Rhomboid domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRG8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.730e-24
Identity = 112/231 (48.48%), Postives = 140/231 (60.61%), Query Frame = 1 
Query:   64 VPPSAGRSTAWRGHQVKMN------LFNDAARCVPAVL--LGVALTTSAPLLDSPATHTHTAVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSL 732
            +P  +GR     G Q ++       L   A   VP+ +  LGV     AP L +P    H                 + +D K+  G+AST + G  KT+TRGVNIENA++  KDL++VSFQQSLVR  NF+ AK ++A FFDA   XXXXXXXXXXXXXXXXXXXXXXXXXXX     YVSGAT++    IEG+D++ TFLRKDQ  YLC    A G NPV+ V T++SL
Sbjct:    5 LPSRSGRGGKGEGGQTQLGASPTFYLARFAMALVPSSVTALGVGFGVLAPALVAPVPAVH---------------AQTDTDFKIKRGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLC--KRASGVNPVTKVSTKESL 218
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A1E7FD64_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD64_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.230e-24
Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1 
Query:  241 PVFA-DDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAI-IEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
            P FA +  G ++ +++K++ G AST   G    +TRGVN++ +D+ +++L  V+FQQS+VR +NFK   L  + FF  XXXXXXXXXXXXXXXXXXXXXX        ++ E YVSG+T  E    IEG+D+++T+LR DQ + LC   T+KGTNPV+GV+TR+SL C
Sbjct:   18 PAFAVEGGGATTAANAKITTGGASTLQSGRTIAITRGVNLDRSDFSNQNLKGVAFQQSIVRDSNFKGCNLYGSSFFXXXXXXXXXXXXXXXXXXXXXXXXNRANLHNTIMREVYVSGSTLFEGIKDIEGSDWSETYLRADQKKLLCEHPTSKGTNPVTGVNTRESLMC 185
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S3Y7I5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7I5_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 2.660e-24
Identity = 97/158 (61.39%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:  277 SDSKLSVGAAST-GDKGARKT---VTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
            SDSK++ GAAST GDKG        TRGV ++ +D+  KDLS VSFQQS+VR TNF          FD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX++ EAY+SG+T +    I+ +D+TDTF+RKDQ++YLC +  A GTNP +GV TR+SLGC
Sbjct:   91 SDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQI--ASGTNPTTGVGTRESLGC 246
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BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S2TUI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TUI3_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 2.780e-24
Identity = 97/158 (61.39%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:  277 SDSKLSVGAAST-GDKGARKT---VTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
            SDSK++ GAAST GDKG        TRGV ++ +D+  KDLS VSFQQS+VR TNF          FD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX++ EAY+SG+T +    I+ +D+TDTF+RKDQ++YLC +  A GTNP +GV TR+SLGC
Sbjct:   93 SDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQI--ASGTNPTTGVGTRESLGC 248
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7U8_ECTSI4.840e-13096.76Thylakoid lumenal 15 kDa protein, chloroplast (P15... [more]
A0A835YUD1_9STRA1.610e-4672.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CVZ3_9STRA1.520e-3261.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A448ZI41_9STRA1.600e-2748.50Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
W7U2G1_9STRA9.540e-2761.69Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0TH33_HEMAN7.840e-2562.91Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A4D9CRG8_9STRA1.730e-2448.48Rhomboid domain-containing protein n=1 Tax=Nannoch... [more]
A0A1E7FD64_9STRA2.230e-2450.00Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S3Y7I5_9EUKA2.660e-2461.39Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2TUI3_9EUKA2.780e-2461.39Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1076contigE-siliculosus-1a_F_contig1076:17596..21347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size744
Model size1325
Exons5
Ec32 orthologEc-06_000240.1
Ec32 ortholog descriptionThylakoid lumenal 15 kDa protein, chloroplast precursor (p15)
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2QQA1@2759,COG1357@1
EggNOG free text desc.Pentapeptide repeats (9 copies)
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0016020,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Seed eggNOG ortholog2880.D7G7U8
Seed ortholog evalue8e-105
Seed ortholog score386.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1076.534.1prot_E-siliculosus-1a_F_contig1076.534.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1076 18177..21347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.5795376-UTR-E-siliculosus-1a_F_contig1076:17595..181761622927576.5795376-UTR-E-siliculosus-1a_F_contig1076:17595..18176Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1076 17596..18176 -
1696318594.312276-UTR-E-siliculosus-1a_F_contig1076:17595..181761696318594.312276-UTR-E-siliculosus-1a_F_contig1076:17595..18176Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1076 17596..18176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.5970643-CDS-E-siliculosus-1a_F_contig1076:18176..182951622927576.5970643-CDS-E-siliculosus-1a_F_contig1076:18176..18295Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 18177..18295 -
1696318594.3223915-CDS-E-siliculosus-1a_F_contig1076:18176..182951696318594.3223915-CDS-E-siliculosus-1a_F_contig1076:18176..18295Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 18177..18295 -
1622927576.6212814-CDS-E-siliculosus-1a_F_contig1076:18531..186171622927576.6212814-CDS-E-siliculosus-1a_F_contig1076:18531..18617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 18532..18617 -
1696318594.3314204-CDS-E-siliculosus-1a_F_contig1076:18531..186171696318594.3314204-CDS-E-siliculosus-1a_F_contig1076:18531..18617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 18532..18617 -
1622927576.635785-CDS-E-siliculosus-1a_F_contig1076:19274..193561622927576.635785-CDS-E-siliculosus-1a_F_contig1076:19274..19356Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 19275..19356 -
1696318594.3392565-CDS-E-siliculosus-1a_F_contig1076:19274..193561696318594.3392565-CDS-E-siliculosus-1a_F_contig1076:19274..19356Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 19275..19356 -
1622927576.6504126-CDS-E-siliculosus-1a_F_contig1076:20102..204261622927576.6504126-CDS-E-siliculosus-1a_F_contig1076:20102..20426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 20103..20426 -
1696318594.3476644-CDS-E-siliculosus-1a_F_contig1076:20102..204261696318594.3476644-CDS-E-siliculosus-1a_F_contig1076:20102..20426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 20103..20426 -
1622927576.6653895-CDS-E-siliculosus-1a_F_contig1076:21214..213471622927576.6653895-CDS-E-siliculosus-1a_F_contig1076:21214..21347Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 21215..21347 -
1696318594.361165-CDS-E-siliculosus-1a_F_contig1076:21214..213471696318594.361165-CDS-E-siliculosus-1a_F_contig1076:21214..21347Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1076 21215..21347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1076.534.1

>prot_E-siliculosus-1a_F_contig1076.534.1 ID=prot_E-siliculosus-1a_F_contig1076.534.1|Name=mRNA_E-siliculosus-1a_F_contig1076.534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=248bp
MATMIMKGLVVSAGVAGVAGFVPPSAGRSTAWRGHQVKMNLFNDAARCVP
AVLLGVALTTSAPLLDSPATHTHTAVLGASPVFADDKGMSSVSDSKLSVG
AASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLV
AAGFFDADLSNCNFESANMNQANLELANLSGANMKNALVTEAYVSGATKM
EPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP*
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mRNA from alignment at E-siliculosus-1a_F_contig1076:17596..21347-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1076.534.1 ID=mRNA_E-siliculosus-1a_F_contig1076.534.1|Name=mRNA_E-siliculosus-1a_F_contig1076.534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3752bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:17596..21347- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGACGATGATTATGAAGGGCTTGGTCGTGTCTGCAGGTGTAGCAGG
AGTGGCGGGATTCGTGCCTCCGTCCGCTGGGAGATCTACAGCCTGGAGAG
GTCATCAGGTCAAAATGAACTTGTTCAACGACGGTGAGTCCATGTGTTGC
CAAGAGGTGAGGAGTCAGGAGTCAGGAGCGTTAACCAGCACAGGGCCTCA
TGGAATATACAAGTGGCATACCTGCCGGACTACAGCTGTGATGAGCTATC
GCATATCTAAATTGGAAAAATATCAAGGTTTTAGGTTTTTGCAGCATGAT
AGCATGATGACTGCTGCTGCTACTGCAGCTGCTGCTGCTGCTGCACATGA
TATGCAACTGACTGCCACCGCAGTCACCGCCTTCCTCAATCCTGCGTGCA
TGATTTTGATTTCCACTTCACGGCAAGGAGCAGCAACACACCTTGAGCAG
CCGGCAGGCATCTCCTCTCACCTTCAACGGGGGCTGCTTGCTGCCTGCCG
GGATCCAGCCACACTGCATTGCATACAGAGTTAGAGCACCGAAGAAATGG
ATGCTGTGCCGTCAGCTGCAGTCAGAGTTCTCAGCATCACAGATCAGATC
ACCCACGCCGTTCGTCCTTGCTTTCTGCCGTGCAAGCTACAAGCTACAAG
CTACAAGCTGTTGGTTGTCGTCCCGTACAAACTTCCTCGCCTGGTTCCGT
GTTGTATGTGAGTAGTGAGTCCCTAAAGGATGGGCCGTTCCTCTGCTCCA
AAAATCGTGTTGAACGGCCTCTCAGCGTCATGTAGCCAACGAAAGAACCC
GTTACCGACTCCCGCGTTCTCAGATGGTTACCACGTCAAAACACAGGGAG
GACGCTGCCTAAAGAGTCTACCACATTTGCCACCGTCCAACCTCCGCGTT
GTTCTTCTTCTCTTCTTTCAGCGGCAAGGTGCGTTCCTGCCGTGCTCCTC
GGAGTGGCCTTGACAACATCAGCCCCGCTCTTGGACAGCCCCGCCACACA
CACACACACCGCCGTTTTGGGAGCGTCTCCCGTGTTCGCTGACGACAAGG
GAATGTCTAGCGTTAGCGATTCCAAGCTCTCGGTGGGAGCGGCTTCGACC
GGAGACAAGGGCGCGCGGAAAACCGTTACGCGTGGCGTGAACATCGAGAA
CGCTGACTACCACGACAAGGACCTGTCGAGCGTTTCCTTCCAGCAGAGCC
TGGTGCGCGGGACGAACTTCAAGAACGCAAAGCTCGTGGCGGCAGGTGAC
CTTTGCGTAGGCTAAGCGGCTCATTGCGCAGTCTGCCTGTAGACGGCCGG
TCGTGATCACGCCACACACAGGACGGGGTGCATCCTGCGCCCCGCCCCCG
CCCCTGCGTTGAGATAGACCGAGACAGAGACAGAGAAAGACACAGAGGCA
GAGACAGACAGGCAGACAGACAGGCATAATAGAGAGACTGACAAGAGACA
GAGAGAGGGGGGGGGTGTAGGTCTGTCAGGCTGGGATCCATAGCAGTTGC
TGGCCTTGCCTTTTTCTATTTGCCACGGAACGCCTTCAGGTGATTTAAAG
TGTCATAGTCACGCTTTCCCAGCAACGACAGTTCTGGCAATCAAACGGCT
GAACGCTGTGTGTGTTGCGATCGCTCGTTCCATACAAGTACATTATGCTG
AGCGCGAGAGGCTCAAAATTTACTACAGCAGTAGTGCACGACATGAGGCC
CTGTCTGTTTGGTTTCGGAACGTTTCCGAGAGCGGGAAGCAAGCGCAGAA
GACGAGCACAACCGTTGGAGAACCAAACTTTTGGATATGTGTATGGGGCC
CGCGGGGGAGTTGCGATACGGCGACGTTTGCGAGGGCCACGCAGGGCCCA
CGTCTAGACATATACCTAACAACGCTACAGCAGTTTCGAGATTGAGCTCC
TGCAATCCCTGCCCAGCGTCGACTGTGGTCTAATGCCTCCATTTTTTTGT
GTCTGCGAACCTTTCAACCTTTCCATTTTTTCGTTTTCCAGGGTTCTTCG
ACGCTGACCTTTCCAACTGCAACTTCGAGTCAGCGAACATGAACCAAGCC
AACCTCGAGCTCGCAAATTTAAGGTGAGGTGTCGAGGCAAGACTAACAGT
TCCGAGGAGTTGGCGCACCATTCTTAGGCCTGGTCGTGGCACCCACAGCA
AGCAGCATGCTGTATGTTGCCACCACTTATGCGTGTGGAGCAATACTGCT
GTCGCTGTTTTTTTTGCTTGCCGGGTGCATGGAATGGTTGTCTGGGCGGA
GGGCCGTCCTCGCATGTCCACCTACTGTACGCTCTACCCGCTGTTGTAGA
AGCAGTAACAAACAAGGGCCAGTGTAATGGTAATGGTAGTGGTGGGGTTT
CTGCTCCATGCGCGTTATCCTACAGCTCAGTTCGTGGGGCGCGTTGAGAA
CGCAGCAACACACTGGCGGGTTCAATGTGCCATGTAGCCTCGTCAATCGA
TATAATTAGGGTCTTGTCCGAAGTAATATCTGCCGTTGTCCTGGTTTTGT
GAGGCTCGGTATTCGGAAACAGGGCACACCCACGGTGGGTGTTTGTCACC
GTATGCATGTGTTCACCGAAAAGTGACCGCCTGTTTACGCAGCTGCAGTT
CGGGCTTCTTTTTCGCCAAGCACGAGCCAACTCGACCTCGTGTTTTGTCT
CGGGTTTTGGCCTGACTGCTTATTGGTCAAACCCTTCTTACGCACCGTTG
TCCTCGGGGCCGGTACTTCTTCCGTAACAGCGGCGCGAATATGAAGAATG
CCTTGGTCACGGAGGCGTACGTCTCGGGCGCTACTAAAATGGAGCCGGCG
ATTATCGAAGGGGCGGGTGAGATGCTCGTCTAAATAGTGCGTTGGTTTCT
CTAGACCGTGCTTGTTTGTGTCTATAATTTAGTGTTTTTTCACAAGATGC
GTTGGGGTTTCTGTTTTGCTATGCATAGCGGCGTGCGAGACTACACAGAG
GGCTGCTGCTTGCCTTTCCACCGTGCGCGTGCAAGACGAATATCGTGTGT
ATCAGGCTTATCTTTGGCCGTGTCCATCCCATGCCCCCTTTATTCCTTGC
AGACTTCACAGATACGTTTCTACGGAAAGACCAGGTCAGGTATCTCTGCG
GCCTGGATACCGCCAAGGGAACCAACCCTGTTTCGGGGGTGGACACCAGG
GATAGCTTGGGTTGCCCCTGACGTTGCTAGCGAATAGCCCCATGTGTGAT
GTTCTCTGGTACTGATGTTGAACATTGTCATAGCTGCTGTCACAACTTTT
GTTGTTTCGGCAATAGAAGGATTGGATAGGTGGTCGGCAGAGCTAAGGCG
TTGGGTTTGTGGCATCAGTGTTATTTCTTTTAACGGCCGCAACCTGTCGT
TTACGTGTTATAGCTAGCGGGGGGACAACGGTAGAGGCAATGCCCGTCGT
CGGTATTTCCGCGATATTTCTGCGACTGCCCCACGATGGGCGTGGCCACC
CTAGATAGATGGACCCGAGATGTGTTGTCAGGAGAATGATGACAGGGCAG
TAATAGAGACGCATACGTGAACACTGGACTTTTGGCTCTTTGTTTCGATG
CGTGCGTAAAACCATACAGTGGCAATTGCTTCGTGCCCTGGTAATTTCGA
GAGAGGCAAAATATGAGGTCAGGGAAAACGTGTAGATAAGACTTTGCTGG
CAGACGGCGAACGGGCCATGCGCTGCCTAAGATACCACACACAACTTTGG
ACTGATGTTCAAAGCTCGATCACATTGCAGCAAACAGGTGACGGTGCCGA
AC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1076:17596..21347-

>mRNA_E-siliculosus-1a_F_contig1076.534.1 ID=mRNA_E-siliculosus-1a_F_contig1076.534.1|Name=mRNA_E-siliculosus-1a_F_contig1076.534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:17596..21347- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGACGATGATTATGAAGGGCTTGGTCGTGTCTGCAGGTGTAGCAGG
AGTGGCGGGATTCGTGCCTCCGTCCGCTGGGAGATCTACAGCCTGGAGAG
GTCATCAGGTCAAAATGAACTTGTTCAACGACGATGGCGACGATGATTAT
GAAGGGCTTGGTCGTGTCTGCAGGTGTAGCAGGAGTGGCGGGATTCGTGC
CTCCGTCCGCTGGGAGATCTACAGCCTGGAGAGGTCATCAGGTCAAAATG
AACTTGTTCAACGACGCGGCAAGGTGCGTTCCTGCCGTGCTCCTCGGAGT
GGCCTTGACAACATCAGCCCCGCTCTTGGACAGCCCCGCCACACACACAC
ACACCGCCGTTTTGGGAGCGTCTCCCGTGTTCGCTGACGACAAGGGAATG
TCTAGCGTTAGCGATTCCAAGCTCTCGGTGGGAGCGGCTTCGACCGGAGA
CAAGGGCGCGCGGAAAACCGTTACGCGTGGCGTGAACATCGAGAACGCTG
ACTACCACGACAAGGACCTGTCGAGCGTTTCCTTCCAGCAGAGCCTGGTG
CGCGGGACGAACTTCAAGAACGCAAAGCTCGTGGCGGCAGCGGCAAGGTG
CGTTCCTGCCGTGCTCCTCGGAGTGGCCTTGACAACATCAGCCCCGCTCT
TGGACAGCCCCGCCACACACACACACACCGCCGTTTTGGGAGCGTCTCCC
GTGTTCGCTGACGACAAGGGAATGTCTAGCGTTAGCGATTCCAAGCTCTC
GGTGGGAGCGGCTTCGACCGGAGACAAGGGCGCGCGGAAAACCGTTACGC
GTGGCGTGAACATCGAGAACGCTGACTACCACGACAAGGACCTGTCGAGC
GTTTCCTTCCAGCAGAGCCTGGTGCGCGGGACGAACTTCAAGAACGCAAA
GCTCGTGGCGGCAGGGTTCTTCGACGCTGACCTTTCCAACTGCAACTTCG
AGTCAGCGAACATGAACCAAGCCAACCTCGAGCTCGCAAATTTAAGGGTT
CTTCGACGCTGACCTTTCCAACTGCAACTTCGAGTCAGCGAACATGAACC
AAGCCAACCTCGAGCTCGCAAATTTAAGCGGCGCGAATATGAAGAATGCC
TTGGTCACGGAGGCGTACGTCTCGGGCGCTACTAAAATGGAGCCGGCGAT
TATCGAAGGGGCGGCGGCGCGAATATGAAGAATGCCTTGGTCACGGAGGC
GTACGTCTCGGGCGCTACTAAAATGGAGCCGGCGATTATCGAAGGGGCGG
ACTTCACAGATACGTTTCTACGGAAAGACCAGGTCAGGTATCTCTGCGGC
CTGGATACCGCCAAGGGAACCAACCCTGTTTCGGGGGTGGACACCAGGGA
TAGCTTGGGTTGCCCCTGAACTTCACAGATACGTTTCTACGGAAAGACCA
GGTCAGGTATCTCTGCGGCCTGGATACCGCCAAGGGAACCAACCCTGTTT
CGGGGGTGGACACCAGGGATAGCTTGGGTTGCCCCTGA
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