prot_E-siliculosus-1a_F_contig1076.531.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1076.531.1
Unique Nameprot_E-siliculosus-1a_F_contig1076.531.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length136
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 6.700e-64
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0
Query:    1 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIE 105
            VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHL+ E
Sbjct:    4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A8J1XR95_OWEFU (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XR95_OWEFU)

HSP 1 Score: 53.5 bits (127), Expect = 2.500e-6
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   50 RYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGS 130
            +YL   P   +T E V+   +AL+      +LT  EKLQ++NHRP+ AV + L++E+   R  + + +E L+ ++ +HLGS
Sbjct:   49 KYLENTPCKDQTPEIVANFMKALAPF----KLTKAEKLQLLNHRPTSAVEIQLLVEESEERLTEAQ-IEQLLDVIVEHLGS 124          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A8C5P6Q3_9ANUR (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5P6Q3_9ANUR)

HSP 1 Score: 53.1 bits (126), Expect = 3.890e-6
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0
Query:   48 TERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLI 121
            T +YLS  P   ++ E V    +A+  H    +LT  EKLQ++NHRPS AV + LM+E+   R  +D+ +E LI
Sbjct:   49 TLKYLSSTPCQHQSPEIVHEFLKAMKNH----KLTKAEKLQLLNHRPSTAVEIQLMVEESEERLTEDQ-IEQLI 117          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A0C9S0E1_AMBAM (DNA-directed RNA polymerase III subunit RPC9 (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9S0E1_AMBAM)

HSP 1 Score: 52.4 bits (124), Expect = 4.680e-6
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0
Query:   51 YLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD 135
            YL +   AR+T E +    + LSE     +LT  EKLQ+INHRP+ AV + L+IE+   R  +D+ V+ ++ L+E+ L  A  ++
Sbjct:   21 YLEQTACARQTDEHIEVFLQQLSELPF--KLTKIEKLQLINHRPTTAVEIQLLIEESEERLSEDD-VQTILDLVERTLPPAAEEE 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A7J7PNS8_9CHLO (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PNS8_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 9.490e-6
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   81 LTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESD 134
            LT  E +Q+IN  P+ AV VHL++EDC  R ++ + VEDL+A++ +HL +A  D
Sbjct:   10 LTRGELVQVINLAPASAVEVHLIVEDCEGRLKEQQ-VEDLVAVVARHLQAAAGD 62          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: UPI001EE5B47D (DNA-directed RNA polymerase III subunit RPC9-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5B47D)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   50 RYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD 135
            +YL   P   +  E++     A+  +    +LT  EKLQ++NHRPS AV + +MIE+   R  +D++ E L+ LL K+L + + ++
Sbjct:   48 KYLEGTPCKLQDAESIQKFMDAIKPY----KLTRAEKLQLLNHRPSTAVEIQIMIEESEERLTEDQIYE-LLDLLAKYLPTDKEEE 128          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A3S1BKP9_ELYCH (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BKP9_ELYCH)

HSP 1 Score: 51.2 bits (121), Expect = 2.040e-5
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 0
Query:    6 LVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKM-PAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHL 128
            ++ +FE L  +R      +AGR +K+P    ++   +  E  T + L K  P A  T   V+A   AL+       LT  EKLQ+INHRPS AV + LM+E+   R  +++ VE L+ +L  HL
Sbjct:   10 MLCNFEVLSLLRDI----QAGRGQKKPNKYQTNLATITYE--TIQCLEKSWPCAGHTAPGVAAAMEALAPFG----LTAAEKLQLINHRPSTAVEIQLMVEESEERLSEEQ-VEKLLEVLATHL 122          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A2T7NPK3_POMCA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NPK3_POMCA)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-5
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   48 TERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAE 132
            T +YL + P  ++T E V++  +A+        LT  EKLQ++NHRP+ AV + LMIE+   R  ++++ + L++++   L   E
Sbjct:   47 TVKYLERSPCGQQTPENVASFMKAMKNFN----LTKAEKLQLLNHRPTSAVEIQLMIEESEERLTEEQIYQ-LLSVIAASLPGPE 126          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: E4WW97_OIKDI (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WW97_OIKDI)

HSP 1 Score: 50.4 bits (119), Expect = 3.000e-5
Identity = 34/110 (30.91%), Postives = 59/110 (53.64%), Query Frame = 0
Query:    6 LVADFEALECVRR-QRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDD 114
            L+ + E LE V R Q E++E  + +K    +  +   +  E  T  YLSK+PAA++T+E +    + +       +L   E +Q++N RP Q V ++L+IED   R  ++
Sbjct:    9 LLTNLEVLETVNRYQNEQKEKAKKRKHSVKADEALNTVTLE--TANYLSKLPAAQQTKEGIVEFVQKIKADPDGAKLLPNELIQIVNMRPEQTVELYLLIEDIEGRITEE 116          
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A2P4XMW4_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMW4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.520e-5
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   81 LTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGS 130
            LT+ EKLQ INH P++ V +HL+IEDC  RF + + V++LI ++E+ LG+
Sbjct:  386 LTSAEKLQFINHIPTELVDIHLIIEDCAGRFSETQ-VDELIRIVERTLGA 434          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G7U4_ECTSI6.700e-6498.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J1XR95_OWEFU2.500e-635.80DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A8C5P6Q3_9ANUR3.890e-640.54DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A0C9S0E1_AMBAM4.680e-637.65DNA-directed RNA polymerase III subunit RPC9 (Frag... [more]
A0A7J7PNS8_9CHLO9.490e-646.30DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
UPI001EE5B47D1.530e-533.72DNA-directed RNA polymerase III subunit RPC9-like ... [more]
A0A3S1BKP9_ELYCH2.040e-535.48DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A2T7NPK3_POMCA2.320e-532.94DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
E4WW97_OIKDI3.000e-530.91DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A2P4XMW4_9STRA4.520e-550.00DNA-directed RNA polymerase III subunit RPC9 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 5..127
e-value: 8.7E-4
score: 12.7
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 2..128
e-value: 9.6E-17
score: 63.1
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 8..126
e-value: 4.4E-16
score: 59.3
IPR038846DNA-directed RNA polymerase III subunit RPC9PANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 5..133
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 8..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1076contigE-siliculosus-1a_F_contig1076:1527..3208 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1076.531.1mRNA_E-siliculosus-1a_F_contig1076.531.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1076 1527..3208 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1076.531.1 ID=prot_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATER
YLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAV
HLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like_sf
IPR038846RPC9
IPR005574RPB4/RPC9
IPR038324Rpb4/RPC9_sf
IPR006590RNA_pol_Rpb4/RPC9_core