mRNA_E-siliculosus-1a_F_contig1076.531.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI) HSP 1 Score: 199 bits (506), Expect = 6.700e-64 Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1 Query: 1 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIE 315
VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHL+ E
Sbjct: 4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A8J1XR95_OWEFU (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XR95_OWEFU) HSP 1 Score: 53.5 bits (127), Expect = 2.500e-6 Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 148 RYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGS 390
+YL P +T E V+ +AL+ +LT EKLQ++NHRP+ AV + L++E+ R + + +E L+ ++ +HLGS
Sbjct: 49 KYLENTPCKDQTPEIVANFMKALAPF----KLTKAEKLQLLNHRPTSAVEIQLLVEESEERLTEAQ-IEQLLDVIVEHLGS 124
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A8C5P6Q3_9ANUR (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5P6Q3_9ANUR) HSP 1 Score: 53.1 bits (126), Expect = 3.890e-6 Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1 Query: 142 TERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLI 363
T +YLS P ++ E V +A+ H +LT EKLQ++NHRPS AV + LM+E+ R +D+ +E LI
Sbjct: 49 TLKYLSSTPCQHQSPEIVHEFLKAMKNH----KLTKAEKLQLLNHRPSTAVEIQLMVEESEERLTEDQ-IEQLI 117
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A0C9S0E1_AMBAM (DNA-directed RNA polymerase III subunit RPC9 (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9S0E1_AMBAM) HSP 1 Score: 52.4 bits (124), Expect = 4.680e-6 Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 151 YLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD 405
YL + AR+T E + + LSE +LT EKLQ+INHRP+ AV + L+IE+ R +D+ V+ ++ L+E+ L A ++
Sbjct: 21 YLEQTACARQTDEHIEVFLQQLSELPF--KLTKIEKLQLINHRPTTAVEIQLLIEESEERLSEDD-VQTILDLVERTLPPAAEEE 102
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A7J7PNS8_9CHLO (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PNS8_9CHLO) HSP 1 Score: 50.4 bits (119), Expect = 9.490e-6 Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 Query: 241 LTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESD 402
LT E +Q+IN P+ AV VHL++EDC R ++ + VEDL+A++ +HL +A D
Sbjct: 10 LTRGELVQVINLAPASAVEVHLIVEDCEGRLKEQQ-VEDLVAVVARHLQAAAGD 62
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: UPI001EE5B47D (DNA-directed RNA polymerase III subunit RPC9-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5B47D) HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5 Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 148 RYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD 405
+YL P + E++ A+ + +LT EKLQ++NHRPS AV + +MIE+ R +D++ E L+ LL K+L + + ++
Sbjct: 48 KYLEGTPCKLQDAESIQKFMDAIKPY----KLTRAEKLQLLNHRPSTAVEIQIMIEESEERLTEDQIYE-LLDLLAKYLPTDKEEE 128
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A3S1BKP9_ELYCH (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BKP9_ELYCH) HSP 1 Score: 51.2 bits (121), Expect = 2.040e-5 Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 16 LVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKM-PAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHL 384
++ +FE L +R +AGR +K+P ++ + E T + L K P A T V+A AL+ LT EKLQ+INHRPS AV + LM+E+ R +++ VE L+ +L HL
Sbjct: 10 MLCNFEVLSLLRDI----QAGRGQKKPNKYQTNLATITYE--TIQCLEKSWPCAGHTAPGVAAAMEALAPFG----LTAAEKLQLINHRPSTAVEIQLMVEESEERLSEEQ-VEKLLEVLATHL 122
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A2T7NPK3_POMCA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NPK3_POMCA) HSP 1 Score: 51.2 bits (121), Expect = 2.320e-5 Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 142 TERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAE 396
T +YL + P ++T E V++ +A+ LT EKLQ++NHRP+ AV + LMIE+ R ++++ + L++++ L E
Sbjct: 47 TVKYLERSPCGQQTPENVASFMKAMKNFN----LTKAEKLQLLNHRPTSAVEIQLMIEESEERLTEEQIYQ-LLSVIAASLPGPE 126
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: E4WW97_OIKDI (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WW97_OIKDI) HSP 1 Score: 50.4 bits (119), Expect = 3.000e-5 Identity = 34/110 (30.91%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 16 LVADFEALECVRR-QRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDD 342
L+ + E LE V R Q E++E + +K + + + E T YLSK+PAA++T+E + + + +L E +Q++N RP Q V ++L+IED R ++
Sbjct: 9 LLTNLEVLETVNRYQNEQKEKAKKRKHSVKADEALNTVTLE--TANYLSKLPAAQQTKEGIVEFVQKIKADPDGAKLLPNELIQIVNMRPEQTVELYLLIEDIEGRITEE 116
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match: A0A2P4XMW4_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMW4_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 4.520e-5 Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 241 LTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGS 390
LT+ EKLQ INH P++ V +HL+IEDC RF + + V++LI ++E+ LG+
Sbjct: 386 LTSAEKLQFINHIPTELVDIHLIIEDCAGRFSETQ-VDELIRIVERTLGA 434 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1076.531.1 >prot_E-siliculosus-1a_F_contig1076.531.1 ID=prot_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERback to top mRNA from alignment at E-siliculosus-1a_F_contig1076:1527..3208+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1076.531.1 ID=mRNA_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1682bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:1527..3208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1076:1527..3208+ >mRNA_E-siliculosus-1a_F_contig1076.531.1 ID=mRNA_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:1527..3208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |