Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)
HSP 1 Score: 199 bits (506), Expect = 6.700e-64
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1
Query: 1 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIE 315
VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHL+ E
Sbjct: 4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A8J1XR95_OWEFU (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XR95_OWEFU)
HSP 1 Score: 53.5 bits (127), Expect = 2.500e-6
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 148 RYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGS 390
+YL P +T E V+ +AL+ +LT EKLQ++NHRP+ AV + L++E+ R + + +E L+ ++ +HLGS
Sbjct: 49 KYLENTPCKDQTPEIVANFMKALAPF----KLTKAEKLQLLNHRPTSAVEIQLLVEESEERLTEAQ-IEQLLDVIVEHLGS 124
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A8C5P6Q3_9ANUR (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5P6Q3_9ANUR)
HSP 1 Score: 53.1 bits (126), Expect = 3.890e-6
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 142 TERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLI 363
T +YLS P ++ E V +A+ H +LT EKLQ++NHRPS AV + LM+E+ R +D+ +E LI
Sbjct: 49 TLKYLSSTPCQHQSPEIVHEFLKAMKNH----KLTKAEKLQLLNHRPSTAVEIQLMVEESEERLTEDQ-IEQLI 117
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A0C9S0E1_AMBAM (DNA-directed RNA polymerase III subunit RPC9 (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9S0E1_AMBAM)
HSP 1 Score: 52.4 bits (124), Expect = 4.680e-6
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 151 YLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD 405
YL + AR+T E + + LSE +LT EKLQ+INHRP+ AV + L+IE+ R +D+ V+ ++ L+E+ L A ++
Sbjct: 21 YLEQTACARQTDEHIEVFLQQLSELPF--KLTKIEKLQLINHRPTTAVEIQLLIEESEERLSEDD-VQTILDLVERTLPPAAEEE 102
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A7J7PNS8_9CHLO (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PNS8_9CHLO)
HSP 1 Score: 50.4 bits (119), Expect = 9.490e-6
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 241 LTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESD 402
LT E +Q+IN P+ AV VHL++EDC R ++ + VEDL+A++ +HL +A D
Sbjct: 10 LTRGELVQVINLAPASAVEVHLIVEDCEGRLKEQQ-VEDLVAVVARHLQAAAGD 62
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
UPI001EE5B47D (DNA-directed RNA polymerase III subunit RPC9-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5B47D)
HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 148 RYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAESDD 405
+YL P + E++ A+ + +LT EKLQ++NHRPS AV + +MIE+ R +D++ E L+ LL K+L + + ++
Sbjct: 48 KYLEGTPCKLQDAESIQKFMDAIKPY----KLTRAEKLQLLNHRPSTAVEIQIMIEESEERLTEDQIYE-LLDLLAKYLPTDKEEE 128
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A3S1BKP9_ELYCH (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BKP9_ELYCH)
HSP 1 Score: 51.2 bits (121), Expect = 2.040e-5
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 16 LVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKM-PAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHL 384
++ +FE L +R +AGR +K+P ++ + E T + L K P A T V+A AL+ LT EKLQ+INHRPS AV + LM+E+ R +++ VE L+ +L HL
Sbjct: 10 MLCNFEVLSLLRDI----QAGRGQKKPNKYQTNLATITYE--TIQCLEKSWPCAGHTAPGVAAAMEALAPFG----LTAAEKLQLINHRPSTAVEIQLMVEESEERLSEEQ-VEKLLEVLATHL 122
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A2T7NPK3_POMCA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NPK3_POMCA)
HSP 1 Score: 51.2 bits (121), Expect = 2.320e-5
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 142 TERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGSAE 396
T +YL + P ++T E V++ +A+ LT EKLQ++NHRP+ AV + LMIE+ R ++++ + L++++ L E
Sbjct: 47 TVKYLERSPCGQQTPENVASFMKAMKNFN----LTKAEKLQLLNHRPTSAVEIQLMIEESEERLTEEQIYQ-LLSVIAASLPGPE 126
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
E4WW97_OIKDI (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WW97_OIKDI)
HSP 1 Score: 50.4 bits (119), Expect = 3.000e-5
Identity = 34/110 (30.91%), Postives = 59/110 (53.64%), Query Frame = 1
Query: 16 LVADFEALECVRR-QRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDD 342
L+ + E LE V R Q E++E + +K + + + E T YLSK+PAA++T+E + + + +L E +Q++N RP Q V ++L+IED R ++
Sbjct: 9 LLTNLEVLETVNRYQNEQKEKAKKRKHSVKADEALNTVTLE--TANYLSKLPAAQQTKEGIVEFVQKIKADPDGAKLLPNELIQIVNMRPEQTVELYLLIEDIEGRITEE 116
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Match:
A0A2P4XMW4_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMW4_9STRA)
HSP 1 Score: 52.0 bits (123), Expect = 4.520e-5
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 241 LTTPEKLQMINHRPSQAVAVHLMIEDCHRRFRDDELVEDLIALLEKHLGS 390
LT+ EKLQ INH P++ V +HL+IEDC RF + + V++LI ++E+ LG+
Sbjct: 386 LTSAEKLQFINHIPTELVDIHLIIEDCAGRFSETQ-VDELIRIVERTLGA 434
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1076.531.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 13
0 1 Expect = 6.70e-64 / Id = 98.10 Expect = 2.50e-6 / Id = 35.80 Expect = 3.89e-6 / Id = 40.54 Expect = 4.68e-6 / Id = 37.65 Expect = 9.49e-6 / Id = 46.30 Expect = 1.53e-5 / Id = 33.72 Expect = 2.04e-5 / Id = 35.48 Expect = 2.32e-5 / Id = 32.94 Expect = 3.00e-5 / Id = 30.91 Expect = 4.52e-5 / Id = 50.00 Sequence D7G7U4_ECTSI A0A8J1XR95_OWEFU A0A8C5P6Q3_9ANUR A0A0C9S0E1_AMBAM A0A7J7PNS8_9CHLO UPI001EE5B47D A0A3S1BKP9_ELYCH A0A2T7NPK3_POMCA E4WW97_OIKDI A0A2P4XMW4_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 0 Stop 1 Cds size 408 Model size 408 Exons 4 Ec32 ortholog Ec-06_000280.1 Ec32 ortholog description RNA polymerase II, Rpb4 Hectar predicted targeting category other localisation Best eggNOG OG NA|NA|NA Best tax level Rodentia COG Functional cat. K EggNOG OGs 35PPZ@314146,3A8AJ@33154,3BU6M@33208,3DAMV@33213,3JGJP@40674,48CID@7711,499MU@7742,4Q594@9989,KOG4168@1,KOG4168@2759 EggNOG free text desc. DNA-directed RNA polymerase III subunit GOs GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006351,GO:0006383,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 Preferred name Crcp Seed eggNOG ortholog 10160.XP_004630615.1 Seed ortholog evalue 7.2e-07 Seed ortholog score 60.5 Taxonomic scope Mammalia
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1076.531.1
>prot_E-siliculosus-1a_F_contig1076.531.1 ID=prot_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATER back to top mRNA from alignment at E-siliculosus-1a_F_contig1076:1527..3208+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1076.531.1 ID=mRNA_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1682bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:1527..3208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GTAACGTACGATAGGCTGGTTGCAGATTTTGAGGCTCTAGAATGCGTCCG
CCGCCAGCGTGAACGGCGAGAAGCCGGCAGGGCAAAGAAGGAGCCTCCCG
ACAGCGGTAGCAGCGGAGGCGCTCTGGCAGCCGAGGAAGCGACGGAGCGG
TATCTGTCCAAGATGCCTGCAGCACGCGAGACGAGGGAAGCG GTGAGGGA
TGGGCGGATGAGAGGATGGCCTGCCTTGTAGATGGTGTTGTTGGTGAGCG
AAGTTAGAGGGTGGGTGGGAGTCGCGTCACGCGGGGTAGTCGCAGTGTCA
CGCCTGCCTGACCTGCCACACTGGTTCCACGATCATCCTCTTTTTTCTCC
TGCATGACGTAGACTAGCCGCGGATCTCCAGAGCCTGCAGATAGCAGCAT
TTTATTTGTCTATCCTGCTGATCGTCGAAAATGCTGAGTGTTCGTCTTCC
ATCATTTGACCCATATGACCCTGCGTCTATGCTCTCTTACCCCTGTAAAG
GTATCGGCATGCTGGCGGGCGCTTTCCGAGCATGAGCATTTCTGCCGGCT
CACTACTCCCGAGAAGCTTCAGATGATAAACCACCGCCCGTCCCAGGCTG
TGGCAGTGCACTTG GTGAGCGAGCAAGCCTCTCGGATAAAAATTGAGCCA
CGTTGACTTATCCCAGTGTGTTCCTCCTCCTCCTGTGTGACCCCGGCTGG
TGCGTCCAAACTTAACGAACGGTGTGAAAAGTGGCGTCCAGGATTTTTTT
TTTTTTGTGAGATGGCACAGCATGAATAGTAGACTAGATGTATGAATGGT
GAGGCTACCTCAAGCTTCGTTTTCCTGGTCTGGCAGCGTGGCCGTGTAAG
AACGGTCCCTTTAATTCTTGAAGCTACAACTCTGTACTCTGCCCCGACGC
TGGACACCCTTTCCTCTGGTGTGGAATTATCCAACAACAAGTGACTACAC
ATAGATCACAGCTGCTGTAGTAGATACGTTTAAAGTAGGATCGGGGTCAT
GTGCTTCGATTTTCAAAGCTGGACCCTCAACCTGTCAACCTGTCAACTCC
AACGTTCTCAAGTGGTGGCGCGTTCTGTAGACACGGCAGACATCAAAATC
CCCCTTTGATCATGGCTTTATTTGCGGAAGTCGTTGAACACCTTTTCTTT
CAGCACGTCTATACATACGTCCAAGGCACACGGGATACTGCTCGCCACAC
AGCACGAGCCCTAAGTTTACACGATGGACGACTGCTCAACGCGAAGTCTT
CATAGCAGTAGTAGTGCAATGCTGTCATCCACTCAAGGTGATTTTGTTAT
CCTGACGTTCCGACTACCCTTGGGGGAGCGCGCTACAAAAATGCATATAG
TGCATGCTTTCTCAGACACCCTGTTCGATGAATGTGTGCGACAGATGATC
GAAGACTGCCATCGAAGATTCCGCGACGACGAGCTGGTGGAAGATCTCAT
CGCCCTCTTGGAGAAACAT GTGAGCGAGGCGGATACATCTAGAGGGACGG
GCAGGAGTGGGAAACCTTCGTGCGCACAGCAGGTTGTGCTTTGCACAAAC
ACTTTCGACTGCTCTCTTTCGTCGTGATGCGCTACAGTACACCTATGATC
CGTTTCACACGGCTTCCTCACTCTCCAACTTGTTGCGCCGTTGTTCGCGT
GTTAGCTTGGGTCAGCCGAGAGCGACGATTGA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1076:1527..3208+
>mRNA_E-siliculosus-1a_F_contig1076.531.1 ID=mRNA_E-siliculosus-1a_F_contig1076.531.1|Name=mRNA_E-siliculosus-1a_F_contig1076.531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:1527..3208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top