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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1076.533.1 vs. uniprot
Match: D7G7U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U7_ECTSI) HSP 1 Score: 131 bits (329), Expect = 5.640e-35 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 67 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIR 279
MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIR
Sbjct: 1 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIR 71
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 618 |
| Model size | 620 |
| Exons | 6 |
| Ec32 ortholog | Ec-06_000250.1 |
| Ec32 ortholog description | Neurotransmitter-gated ion-channel transmembrane domain |
| Hectar predicted targeting category | signal anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1076.533.1 >prot_E-siliculosus-1a_F_contig1076.533.1 ID=prot_E-siliculosus-1a_F_contig1076.533.1|Name=mRNA_E-siliculosus-1a_F_contig1076.533.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=206bp
ATRKAPAPGTRGRPSPLSSSGTMPFSLTENLPFLALPLALITLKVTYDVL
PFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELTREED
RAKEEAARKQAAKDRKAAAKQKQKQEAERKAAQAAKEAAAAKALAQQEAE
SKPRSAPQQQQQQPSSGKSKKQSKKQSKPAPPVEEEDSDDEDDFLLRMAD
LERAR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1076:10461..14296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1076.533.1 ID=mRNA_E-siliculosus-1a_F_contig1076.533.1|Name=mRNA_E-siliculosus-1a_F_contig1076.533.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3836bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:10461..14296+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAACCAGGAAAGCTCCAGCCCCAGGCACGCGCGGTCGCCCGTCTCCCCT
CTCGTCTTCAGGAACGATGCCGTTCTCCCTGACAGAGAACCTTCCATTCC
TGGCGCTGCCGTTGGCCCTGATCACCCTCAAGGTACATATGCATGCCCGC
GGGTAGGGTAGTCAGGAATCAGGAGCCGTTTTCTTCTCTCGTGTGGTGGT
GTTTATCGGACAGTTTATTTTGCCTTGCCGTGTTGGCTCCTGTCCACCGG
TGGTTCGTTGTTGGCCAACTTCTTGTGCACTCTTTCGTCGTATCCCCGGG
GGGCGGATTCAAGACGTGGCATGATTTCGGGTGTCGGTAGCTTGGCCCCG
TTCCACTGGGGGCGATTGTGGGTTCTCGCCTCTCTACTGCTGTTGGATGA
GCGGCGCCGAGCTTGTCTCCTAAATCCTACCCGTTTCTTTCTCCCCACGT
GCTCGTGTCTCATTGGACGACGCCACAGGTCACCTACGATGTGCTTCCCT
TCATGGCCTTCTTGGCGCTGGTCGCTGTGGCCGTAGGCTGCTACATGTTC
TACGCGGGGAAGTCGGTGAGGACGAGCGCTCGGCATCGCTGCAGAATGGT
TGCTGCAGAACCCAGCTGCCCATTTCGGAAATAGTCTACCCTCTGTGTTG
TACTTCTACACAGCAGTATTCCAGAAGAATGCTGTCGCGAGATTGTGAAA
TCAAGCCATGGGTTTTGGCCGCCCCCCGGCTTGTCGGCGGGGTTGTCTCC
ACACTTTTTGCGACCTGTTTTGAGAAGAGAAGCGATGGGTGGCCTTGGTC
TGAGTGCAGTACATATTGACCAAAGCTTCTGTTTGTTCTTTTGCGTCTGG
TCTGCACAAGACCAAAGGCCTACAGCAAGTATGCTACAATGCATCACCCG
TTTCACACAAAACCCGCCAGGGTCACACAACACAGCTGGACACCCACTCT
GTCGGCATCACACGGCGGGCAGCACGATTGTAGACCGTGTTTTGTCGAAT
AGGTGGTTGCCATGTAGCAGGTAGCAGGGGTTCCAAAGAGTGTTCCACCG
CAGTGAAAAAAGAGTCTGCGATTCGCTGAGACGCGACGTGCTCTTGATCG
AGCAGATCCGTGTTGTGTCCTGCTTCCGCCGCCGTAGGCTTATCGTACGC
TATGCATAGCTAGTGGGTACAAGCCCAACAGGTCAGCTGCGTGTGGTGGC
TCGTCGTGTCAGTTGATTAGTAGTCTGCCACGCACGGCATGGCACAACGT
CGGAAGAGTTTCCGCATCATCTTTTCTACAGCCTGGAGTATTACTGCTGT
AGCATAGATACATGTCCGCACTCCCTGCACGGCGGCAGGTATCATATCTC
GGATGTTCATGTACCTTAAGTATCTTTTGTCTTCCCGTGGGGCGGCGGAG
GGCGGGAGCTGTGGGAATATCGGTCACATGTTCGCTGTATACGCGTGGTG
CCAGCCATAGCAAGATGGAACGTCAGTGGCTCCTGGGTGAAGAAGTCAGG
AAGCGCGGGTAGACTGACTCCCCAGGAGACGGATTTTACGACGCGCTTGC
ACTACTGTATCGGGGCCGCCCTGTGGGTACGACATCCCAAGTGTACTCTC
AAGCCTGATTCCCGCTTTCCCTCTATCGGTCTGGCCGTCTCGCCTGTCTG
TCTCTCTGTCTGCCTTGACTCCCTCCCGTTCTCTGTGGACGACATGGATC
AATGGTTTGGTCACCACCATGACCGACCGTCATCTTCGGTCCATGCTGAG
GGAACAGAGCCCGGCAGCGCAGAGGACGGCGAAGAAGGCGGAGGCCACGG
CGGACAGCCTGATCCGGGAGCTCACTCGGGAGGAAGACAGGTGGGCATCG
TTGTCGTCCATCTCCCATCGTCCATCGTAGCATCGTAGGAGACAGGCAGG
CAGTAGTAGGCTTCAAAACTCGCTTCCCCGACAACTGCCGCTCCTTGGGT
TGGGGGTCGTGTATTTCCAGTAGAAGCAGGTCTGTAAACGAGAGCTTGCC
CCTAGCGCTCGCCGGCGAATGGATCAACACATCGCTGGCTTCGTACCGGG
TGCGGGTGTGCCGCTTCGTACCACGTGTTACAACCGTGCCGTGGGCATTT
AGATCCATACGTTACCATTTATGACACCCCCAGGCCACACCGTCCGTAGC
CCCGATTTGTTGTGTCCGCCGTGACCGGGAGGAAGTGCAGTGTCGATTAT
GAAGACGAGGAGGAACGCGCACCATGCGCATCTTTTACAGCACACGTCCA
GACATGCCGAATACTCCACAACAACGTTCTCGTTCGGTGTTGCGCGATCT
ACATGTACTGCTGTGGCTGCGTCCGAAGCTGCCTTCGACCGCCCCGTCGT
CCGTCGTAGCTTGAGAATCGCCTCGCCTCTCTGCCAGAGCCTTTCATGTG
CCCAGTTCCAGATGAAGGGGTGTACCCAGTGTTGGTGTTTGCACCTCTTG
TCGTTTGGGCCCTTCTTTCAGTGCGACACGCGCCCTATGTTCCTCTGGAT
GTTGTGTTTGTTACGTTGTGATGTGCACCCAGGGCAAAGGAGGAGGCGGC
CAGGAAGCAGGCAGCCAAGGACAGGAAGGCGGCCGCAAAACAGAAGCAGA
AGCAGGAGGTACGTTTTGGCCTGTGTGTGTGTGTGTGTGTTTTACCATTT
AACACCCCCTCACCGTTCCTCTGCTGTTGTCGCCGTTGCTCTTGGCCAGC
GGTACCCGGTTCTCGGTTTTAATACGTGTCCCTCCCTCCGGCGGCGTGTT
TTAGACCTACGCGGCTATCACTGCTCGTTTACTTGGGGGTTGTTTCGACG
CAGGCTGCCCACCAAGCGGCGGCGCCGATGATAAAATAAGGGGACCACCT
CCCTTGCGTCAATCCCAGCAACCTACATGTAACCTGTTCCCCCGAACCAA
CCCTTCCCCTCTCAGGCTGAACGCAAGGCGGCACAGGCAGCTAAGGAGGC
CGCTGCCGCGAAGGCGCTCGCGCAGCAGGAGGCGGAGAGCAAGCCCCGCT
CAGCGCCGCAGCAGCAGCAGCAGCAGCCGTCCTCGGGCAAGTCCAAGAAG
CAGTCTAAGAAGCAGTCCAAGCCCGCCCCACCGGTGAGGGTCATGGCCGG
CGTGATGCCGACAGCAGTGATGTTATCATCGCCTATTGTAGCTGTGCCCC
GTGTGACTGCAGGTGTCGTAGATCGTGATCCACTTTGGTCTTTTGGCAAA
CGTGACCCCGGCGTTCCATAATTCTGCCAGGTATGTTTTTTGCGCCTGTC
TTTGTGTTGTTAATTGAACCTTGCCTCTTATTTGACCTGGAGCTGGTTGG
CCTTGAGAACCTTGGGCTATAGAGTAGGTGCATGGCCGTAAATCACCCCC
ATCTTCTCCCAGAGCTAGAAGCTTACTGAAGCCCCACCACCACGCACACC
AATACGAAGACCAGGTATGTAGGTGACACCACTCAGTACATGGGCGCTGT
GAAGCCAGCTGAACATTGCACAATCAGTGCATGCGTACTGTGAATCAATC
TCAATTTATCACCCCTTCGTATACGTGCTGTGAAGCTATGTATCTGAATG
TGTGACAAATCGTTCCGACTGGTTTCCCTTCCCCCTTGCCCCCACTGCCG
TCCTGCTGCATGGGCAATGGTCGGCGCCCCGCCCGCTGCTGCTATGATTG
ACTATCGACGATGGCGAATGGCTCGGATTGGTCGGGTCTCATGCCGAATC
TCATGGGCTGGGTTTGAATGGATGTCTGTGATGGGCTGGGCCATTGGATG
CGTTGGCGAGACAGGTGGAAGAAGAGGACTCGGATGACGAAGACGACTTC
CTTCTGCGCATGGCCGACCTTGAACGGGCGAGGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1076:10461..14296+ >mRNA_E-siliculosus-1a_F_contig1076.533.1 ID=mRNA_E-siliculosus-1a_F_contig1076.533.1|Name=mRNA_E-siliculosus-1a_F_contig1076.533.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:10461..14296+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAACCAGGAAAGCTCCAGCCCCAGGCACGCGCGGTCGCCCGTCTCCCCT
CTCGTCTTCAGGAACGATGCCGTTCTCCCTGACAGAGAACCTTCCATTCC
TGGCGCTGCCGTTGGCCCTGATCACCCTCAAGGCAACCAGGAAAGCTCCA
GCCCCAGGCACGCGCGGTCGCCCGTCTCCCCTCTCGTCTTCAGGAACGAT
GCCGTTCTCCCTGACAGAGAACCTTCCATTCCTGGCGCTGCCGTTGGCCC
TGATCACCCTCAAGGTCACCTACGATGTGCTTCCCTTCATGGCCTTCTTG
GCGCTGGTCGCTGTGGCCGTAGGCTGCTACATGTTCTACGCGGGGAAGTC
GGTCACCTACGATGTGCTTCCCTTCATGGCCTTCTTGGCGCTGGTCGCTG
TGGCCGTAGGCTGCTACATGTTCTACGCGGGGAAGTCGAGCCCGGCAGCG
CAGAGGACGGCGAAGAAGGCGGAGGCCACGGCGGACAGCCTGATCCGGGA
GCTCACTCGGGAGGAAGACAGAGCCCGGCAGCGCAGAGGACGGCGAAGAA
GGCGGAGGCCACGGCGGACAGCCTGATCCGGGAGCTCACTCGGGAGGAAG
ACAGGGCAAAGGAGGAGGCGGCCAGGAAGCAGGCAGCCAAGGACAGGAAG
GCGGCCGCAAAACAGAAGCAGAAGCAGGAGGGCAAAGGAGGAGGCGGCCA
GGAAGCAGGCAGCCAAGGACAGGAAGGCGGCCGCAAAACAGAAGCAGAAG
CAGGAGGCTGAACGCAAGGCGGCACAGGCAGCTAAGGAGGCCGCTGCCGC
GAAGGCGCTCGCGCAGCAGGAGGCGGAGAGCAAGCCCCGCTCAGCGCCGC
AGCAGCAGCAGCAGCAGCCGTCCTCGGGCAAGTCCAAGAAGCAGTCTAAG
AAGCAGTCCAAGCCCGCCCCACCGGCTGAACGCAAGGCGGCACAGGCAGC
TAAGGAGGCCGCTGCCGCGAAGGCGCTCGCGCAGCAGGAGGCGGAGAGCA
AGCCCCGCTCAGCGCCGCAGCAGCAGCAGCAGCAGCCGTCCTCGGGCAAG
TCCAAGAAGCAGTCTAAGAAGCAGTCCAAGCCCGCCCCACCGGTGGAAGA
AGAGGACTCGGATGACGAAGACGACTTCCTTCTGCGCATGGCCGACCTTG
AACGGGCGAGGTGAGTGGAAGAAGAGGACTCGGATGACGAAGACGACTTC
CTTCTGCGCATGGCCGACCTTGAACGGGCGAGGTGA back to top
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