mRNA_E-siliculosus-1a_F_contig10754.530.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10754.530.1
Unique NamemRNA_E-siliculosus-1a_F_contig10754.530.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: D7G3U3_ECTSI (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U3_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 4.520e-70
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGELRALLGCASDSASRPQVGKEALPSGLG 318
            +SLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGELRAL  CA+D ASRPQVGKEALPSGLG
Sbjct:   81 ESLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGELRALPDCAADFASRPQVGKEALPSGLG 186
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: A0A067CLJ4_SAPPC (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CLJ4_SAPPC)

HSP 1 Score: 149 bits (375), Expect = 5.760e-40
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGELR 243
            QSLDVDYVLVIFGG+TGYSSDDINKFLWPVRIGSGVFP+DM  E+DF + +G FDVGP GSK+  NCLAYKLCYYRFGE+R
Sbjct:  332 QSLDVDYVLVIFGGLTGYSSDDINKFLWPVRIGSGVFPNDMPAERDFYSASGNFDVGPGGSKILHNCLAYKLCYYRFGEMR 412
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: A0A1V9Z2X8_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z2X8_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.290e-39
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGELR 243
            QSLDVDYVLVIFGG+TGYSSDDINKFLWPVRIGSGVFP+DM  E+DF + +G FDVGP GSKV  NCLAYKLCYYRFGE+R
Sbjct:  616 QSLDVDYVLVIFGGLTGYSSDDINKFLWPVRIGSGVFPNDMPAERDFYSASGNFDVGPGGSKVLHNCLAYKLCYYRFGEMR 696
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: A0A7S2XVF7_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.830e-39
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGELR 243
            +SLDVDYVLVIFGG+TGYSSDDINKFLWPVRIGSGV+P+DM +E DFLN  G FDVGP+ S+ F+NC+AYKLCYYRFGE++
Sbjct:  161 ESLDVDYVLVIFGGLTGYSSDDINKFLWPVRIGSGVYPNDMPNENDFLNDQGSFDVGPSASETFKNCVAYKLCYYRFGEVQ 241
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: W2HBT5_PHYPR (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2HBT5_PHYPR)

HSP 1 Score: 148 bits (373), Expect = 3.290e-39
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGEL 240
            QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGV+PDDM  E+D+ + +G FDVGP GSKV  NCLAYKLCYYRFGE+
Sbjct:  613 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVYPDDMPSERDYYSTSGNFDVGPGGSKVLHNCLAYKLCYYRFGEV 692
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: A0A8K1C594_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C594_PYTOL)

HSP 1 Score: 145 bits (365), Expect = 3.990e-38
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGEL 240
            QSLDVDYVLVIFGG+TGYSSDDINKFLWPVRIGSGV+PDDM  E+DF + +G FDVG  GSKV  NCLAYKLCYYRFGE+
Sbjct:  615 QSLDVDYVLVIFGGLTGYSSDDINKFLWPVRIGSGVYPDDMPSERDFYSASGNFDVGAGGSKVLHNCLAYKLCYYRFGEV 694
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: A0A3M6VAL3_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAL3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.380e-37
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGEL 240
            QSLDVDYVLVIFGGV+GYSSDDINKFLWPVRIGSGV+P+DM  E+DF + +G FD+GP GSK   NCLAYKLCYYRFGE+
Sbjct:  613 QSLDVDYVLVIFGGVSGYSSDDINKFLWPVRIGSGVYPNDMPSERDFYSASGNFDIGPGGSKFLHNCLAYKLCYYRFGEV 692
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: A0A484E0M2_BRELC (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0M2_BRELC)

HSP 1 Score: 143 bits (360), Expect = 1.890e-37
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGEL 240
            QSLDVDYVLVIFGGVTGY SDDINKFLWPVRIGSGV+P+DM  E+D+ + +G FD+GP GSK+  NCLAYKLCYYRFGE+
Sbjct:  611 QSLDVDYVLVIFGGVTGYGSDDINKFLWPVRIGSGVYPNDMPAERDYYSVSGSFDIGPGGSKILHNCLAYKLCYYRFGEV 690
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: K3WH73_GLOUD (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH73_GLOUD)

HSP 1 Score: 143 bits (360), Expect = 1.900e-37
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGEL 240
            QSLDVDYVLVIFGG+TGYSSDDINKFLWPVRIGSGV+P+DM  E+DF + +G FDVG  GSKV  NCLAYKLCYYRFGE+
Sbjct:  621 QSLDVDYVLVIFGGLTGYSSDDINKFLWPVRIGSGVYPNDMPSERDFYSKSGNFDVGAGGSKVLHNCLAYKLCYYRFGEV 700
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Match: I2CR01_NANGC (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CR01_NANGC)

HSP 1 Score: 143 bits (360), Expect = 1.900e-37
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNPTGQFDVGPAGSKVFQNCLAYKLCYYRFGE 237
            +SLDVDYVLVIFGG+TGYSSDDINKFLWPVRIGSGVFP+DM +EKDF + +G FDVGP GSKV  NCLAYKLCYYRFGE
Sbjct:  625 ESLDVDYVLVIFGGLTGYSSDDINKFLWPVRIGSGVFPNDMPNEKDFFSDSG-FDVGPQGSKVLHNCLAYKLCYYRFGE 702
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10754.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U3_ECTSI4.520e-7095.28Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A067CLJ4_SAPPC5.760e-4081.48Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A1V9Z2X8_9STRA1.290e-3982.72Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A7S2XVF7_9STRA2.830e-3977.78Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
W2HBT5_PHYPR3.290e-3982.50Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A8K1C594_PYTOL3.990e-3881.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VAL3_9STRA1.380e-3778.75Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
A0A484E0M2_BRELC1.890e-3777.50Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
K3WH73_GLOUD1.900e-3780.00Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
I2CR01_NANGC1.900e-3783.54Dolichyl-diphosphooligosaccharide--protein glycotr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10754contigE-siliculosus-1a_F_contig10754:136..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size318
Model size318
Exons3
Ec32 orthologEc-00_007060.1
Ec32 ortholog descriptionDolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A, C-terminal fragment, family GT66
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGT66
COG Functional cat.F
EC2.4.99.18
EggNOG OGsCOG1287@1,KOG2292@2759
EggNOG free text desc.oligosaccharyl transferase activity
GOsGO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009628,GO:0009651,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0047484,GO:0048583,GO:0050789,GO:0050896,GO:0065007,GO:0070085,GO:0071704,GO:0071944,GO:0080134,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
KEGG ModuleM00072
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ReactionR04216,R05976
KEGG koko:K07151
KEGG rclassRC00005,RC00482
Preferred nameSTT3A
Seed eggNOG ortholog2880.D7G3U3
Seed ortholog evalue6.1e-54
Seed ortholog score216.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10754.530.1prot_E-siliculosus-1a_F_contig10754.530.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10754 136..1304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.0200448-CDS-E-siliculosus-1a_F_contig10754:135..2701622927576.0200448-CDS-E-siliculosus-1a_F_contig10754:135..270Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10754 136..270 +
1696318594.0670443-CDS-E-siliculosus-1a_F_contig10754:135..2701696318594.0670443-CDS-E-siliculosus-1a_F_contig10754:135..270Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10754 136..270 +
1622927576.031879-CDS-E-siliculosus-1a_F_contig10754:927..10351622927576.031879-CDS-E-siliculosus-1a_F_contig10754:927..1035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10754 928..1035 +
1696318594.081451-CDS-E-siliculosus-1a_F_contig10754:927..10351696318594.081451-CDS-E-siliculosus-1a_F_contig10754:927..1035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10754 928..1035 +
1622927576.0438864-CDS-E-siliculosus-1a_F_contig10754:1229..13041622927576.0438864-CDS-E-siliculosus-1a_F_contig10754:1229..1304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10754 1230..1304 +
1696318594.089728-CDS-E-siliculosus-1a_F_contig10754:1229..13041696318594.089728-CDS-E-siliculosus-1a_F_contig10754:1229..1304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10754 1230..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10754.530.1

>prot_E-siliculosus-1a_F_contig10754.530.1 ID=prot_E-siliculosus-1a_F_contig10754.530.1|Name=mRNA_E-siliculosus-1a_F_contig10754.530.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
QSLDVDYVLVIFGGVTGYSSDDINKFLWPVRIGSGVFPDDMHHEKDFLNP
TGQFDVGPAGSKVFQNCLAYKLCYYRFGELRALLGCASDSASRPQVGKEA
LPSGLG
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10754:136..1304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10754.530.1 ID=mRNA_E-siliculosus-1a_F_contig10754.530.1|Name=mRNA_E-siliculosus-1a_F_contig10754.530.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1169bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10754:136..1304+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTCCCTGGACGTGGACTACGTTCTCGTGATCTTCGGGGGAGTGACGGG
TTACTCTAGCGACGACATCAACAAGTTCTTGTGGCCCGTGCGGATCGGAA
GCGGCGTTTTCCCCGACGACATGCACCACGAGAAGGTAGGTGCCTTTTAA
GTAAGGCATGCGGATTGAAATGGTTTGCGGTACCGAAATGGTATTTTTTA
CGGTGCGGTGCAACACGGAATGCATCACGGGAAGGAGCCTTGGTACAAGG
CATGCGGCATAAAATGATTTGTGGTAACCTTACAAAACGGCGTTATTGTT
TGTACCACACGGAATGCATCATGGGAAGGTGCCTTGGTACAAGGTATGAT
GCATAAAATGATTCGTGGCACGCTACGAGCCGGTACGGTGTGACCACGGT
ACGGAACAGCACGGTGGCGAGGGAATTTCGTAGCACGCCTTGCGGGACGC
TACGGCATACACACCTCGATGACGAAGTGCCAGTTACACCCTGAAACAAC
AAGCGAGATCCACATCTAGCGCCGAAATTTGTGGTCCCTCGTTAACACGA
CGAACATCGCGGCCGGCCTCTCCATTCGACCGGCGATGTTTTGTTTTCTT
CTTCTTTTTTCACGCGGGATCAGGCCCTTGTGCGAAATCCCGCTCTCCCG
TTGTATTATACCCCCATCCGCCAAAGCTAGCTAGATAGCGCTGCGGATTG
TAGAAGGTCGTTCTTCCGGCGTTTGGGCTAACGCGTCCCTACAACCGTCT
GTCCCTCTTTTGTCGGGTGCTTTTTGTTTTTCCTTGGGGCAGGACTTCCT
CAATCCCACCGGGCAGTTCGACGTGGGCCCTGCCGGATCCAAGGTCTTCC
AGAACTGCCTGGCCTACAAGCTGTGCTACTACCGCTTTGGCGAGCTCCGG
GTGCGTCTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGC
GCTTGCTTCGGGCGTTTCTTCAGACTTTGCTTTATGCCTTGCGTCAGGTT
TTGTGTCAGACTTTGCTTTAGACTTTAATTCAGGCTTTGCACCAGACTTG
CGCCAGACTTTGCGCCAGACTCTGCGCCAGACTTTGTGCGTCAGGCTCTG
CTAGGCTGTGCTTCAGACTCTGCGTCTCGCCCTCAAGTCGGGAAGGAGGC
TCTTCCAAGCGGTTTAGGT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10754:136..1304+

>mRNA_E-siliculosus-1a_F_contig10754.530.1 ID=mRNA_E-siliculosus-1a_F_contig10754.530.1|Name=mRNA_E-siliculosus-1a_F_contig10754.530.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10754:136..1304+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTCCCTGGACGTGGACTACGTTCTCGTGATCTTCGGGGGAGTGACGGG
TTACTCTAGCGACGACATCAACAAGTTCTTGTGGCCCGTGCGGATCGGAA
GCGGCGTTTTCCCCGACGACATGCACCACGAGAAGCAGTCCCTGGACGTG
GACTACGTTCTCGTGATCTTCGGGGGAGTGACGGGTTACTCTAGCGACGA
CATCAACAAGTTCTTGTGGCCCGTGCGGATCGGAAGCGGCGTTTTCCCCG
ACGACATGCACCACGAGAAGGACTTCCTCAATCCCACCGGGCAGTTCGAC
GTGGGCCCTGCCGGATCCAAGGTCTTCCAGAACTGCCTGGCCTACAAGCT
GTGCTACTACCGCTTTGGCGAGCTCCGGGACTTCCTCAATCCCACCGGGC
AGTTCGACGTGGGCCCTGCCGGATCCAAGGTCTTCCAGAACTGCCTGGCC
TACAAGCTGTGCTACTACCGCTTTGGCGAGCTCCGGGCTCTGCTAGGCTG
TGCTTCAGACTCTGCGTCTCGCCCTCAAGTCGGGAAGGAGGCTCTTCCAA
GCGGTTTAGGTGCTCTGCTAGGCTGTGCTTCAGACTCTGCGTCTCGCCCT
CAAGTCGGGAAGGAGGCTCTTCCAAGCGGTTTAGGT
back to top