mRNA_E-siliculosus-1a_F_contig1074.524.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1074.524.1
Unique NamemRNA_E-siliculosus-1a_F_contig1074.524.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1074.524.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.780e-11
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 3 
Query:  162 MTGRGSSGRVRRKPQTVYDTAPLASEEQLSQQSEDEGRTRTASGGRRPNKKQKTAAGT 335
            MTGRGSS RVRRKPQTVYDTAPLASEEQLSQQ+++      A+GG  P ++QKTAAGT
Sbjct:    1 MTGRGSSSRVRRKPQTVYDTAPLASEEQLSQQTKEGTGLLAAAGG--PAREQKTAAGT 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1074.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0R2_ECTSI1.780e-1172.41Sister chromatid cohesion complex Cohesin, subunit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1074contigE-siliculosus-1a_F_contig1074:23076..25404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size225
Model size388
Exons3
Hectar predicted targeting categoryother localisation
Seed ortholog score73.9
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EggNOG OGsCOG5537@1,KOG2011@2759
EggNOG free text desc.chromosome segregation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG koko:K06671
Preferred nameIRR1
Seed eggNOG ortholog2880.D7G0R2
Seed ortholog evalue3.5e-11
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1074.524.1prot_E-siliculosus-1a_F_contig1074.524.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1074 24495..25404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.8721998-UTR-E-siliculosus-1a_F_contig1074:23075..231021622927574.8721998-UTR-E-siliculosus-1a_F_contig1074:23075..23102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1074 23076..23102 +
1696318593.3946557-UTR-E-siliculosus-1a_F_contig1074:23075..231021696318593.3946557-UTR-E-siliculosus-1a_F_contig1074:23075..23102Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1074 23076..23102 +
1622927574.8869498-UTR-E-siliculosus-1a_F_contig1074:24360..244941622927574.8869498-UTR-E-siliculosus-1a_F_contig1074:24360..24494Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1074 24361..24494 +
1696318593.4040997-UTR-E-siliculosus-1a_F_contig1074:24360..244941696318593.4040997-UTR-E-siliculosus-1a_F_contig1074:24360..24494Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1074 24361..24494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.898954-CDS-E-siliculosus-1a_F_contig1074:24494..245901622927574.898954-CDS-E-siliculosus-1a_F_contig1074:24494..24590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1074 24495..24590 +
1696318593.4112751-CDS-E-siliculosus-1a_F_contig1074:24494..245901696318593.4112751-CDS-E-siliculosus-1a_F_contig1074:24494..24590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1074 24495..24590 +
1622927574.912783-CDS-E-siliculosus-1a_F_contig1074:25275..254041622927574.912783-CDS-E-siliculosus-1a_F_contig1074:25275..25404Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1074 25276..25404 +
1696318593.4180741-CDS-E-siliculosus-1a_F_contig1074:25275..254041696318593.4180741-CDS-E-siliculosus-1a_F_contig1074:25275..25404Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1074 25276..25404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1074.524.1

>prot_E-siliculosus-1a_F_contig1074.524.1 ID=prot_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MTGRGSSGRVRRKPQTVYDTAPLASEEQLSQQSEDEGRTRTASGGRRPNK
KQKTAAGTHRAKTTAAAKGRGRGGA
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mRNA from alignment at E-siliculosus-1a_F_contig1074:23076..25404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1074.524.1 ID=mRNA_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2329bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1074:23076..25404+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACAGCAACGAGGAGCTGGTGCATCAGGTAAGAAGAGGGAGAGCCAGCCA
TTCCCTATATGTCTTGTTGCTTGGCCATCAGGTGTCGGCGGTGCTTGATT
GCCCTCTCCTTTTCCCCGCACTGAGAAACATGGACTCCATTTTCAAAATT
TTGCCCAGAGAGAGCGAGTTGTACATAGCAACGCCACACGGCGGTTGCAT
TGATTGGGGTTGGAGTATGGCGTCCAACCGCCCAACCTGTTCTTTCTCGA
TCGGTGTCTTCCCTTGTTCTGAACGTTATTACCCTCGTCTTTTTGCAAAG
CGAAAGGAAATGTGAAAATCATACATACCTGATGGAGTACAGCGGTCAGT
AGATAGATACACATCTAAACATGGTTCAGATTTCAAATCTCATGGGTGGA
TTCAAATTACGGCACATGAGAGAGACCAGGTATTGTAAGGCATCTGAACG
AATTCGTTGCTCGTGCACCCACCGTCCGCAGCAGTCTCAAAGTTGTAGTC
TATCGTACGTATCGACACGCCTATTATAGCCTCGAAGTACCGACACTTCT
GGCCAAAGCTTCCGGGCATGTCGTTGTTTGCAACACAATCTCACAGCTTT
GTTTGGTGGCCCATTATTGATCGATCGATCCCCCCGCCGGCGGTTGACTG
CTGCTGTGGGTCTTTTTTAGAAGGAAGGAAATATAATCTCACAGAGAGAC
TATGCTGCCCGTTCGAGATAATAATAATAATAATACCCACAGCAGTCTAA
AGGGAGGTGTTGACTACAGTATGCTGTCGACTGGTGTTGACGCAGTGTTG
CACTCGCACACCCCTTTGACTTCGACTGTAAAAGCGCGCGCCATCGAAAC
ACGCATGAAGAGAGAGAGGGAGAGAGAGGAATGACGTCCCTTGCGCTCCA
AAAGGCACAGGCTCTACACGGCGGCTCGTAGTTGAACTACACAGCAGTAC
ATGCAACCCGTGCCGATCAAGATGTGCTGAATAGCCTTACAGCAGTACAT
GGTGCATGGTAGACTTCTTCGAGTACAAAACCACGTCTGCCGTGAATTCG
ATACCTTGATGGTGTCTCCCAGACACACAGCATTTGCTCGAGAATGTGCT
CCCAGGCTCACCTCCAAGTCAAGTGGCCCTGACTGGCCACGGGGGTATTA
CAGCCAAGTGCACTAGAGGAGGGGTAACAAGGGCGGAGACGTTGTAGAGC
GACGCGCACTCGACAACAAACAGACTCCCCATGCACCAGGCTAACCGCCG
CCGCCCCTTTAAACCTTGTAACGGCCCGTTCATAGGCCCGTTACAAGGCG
GCAGCACCAGAGAGGGAACGATCGCAGTCGGCACAACGAGGGAGGAAGAG
CAGAGAGACGAGTGAAGCGCACGAGATACACAAGAAGCAGGCTTGTATCT
ACCGTCCGAGGGAGAGAGGATGACCGGTAGGGGTAGCAGCGGTCGGGTGC
GGAGGAAGCCCCAGACGGTTTACGACACCGCCCCCCTAGCGTCCGAGGAG
CAGCTGTCTCAGCAGGTGAGCTCTCAGTCGGCAGACAGCACGCGGAGGTC
TTGATAACGTTGTTGTTGATCGGCGTGTCGTGTTTTGTTTATACCAGTGC
ACCAGCACCAGAGAAATAGCCCAAACCAGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGGGCCGCCCGGGGGGGAGGGGGGGGCGGG
GGGGGGGAGAAAAAAGAGAAGAACCTGCGGACGGGGCGGGGACAAGTCGC
ACCATGACCAGTTTGCGGGCGTATCGGGATAAGGTGGTGGCGTGTTAGTG
AAATAAAACCTTGAGATCTCATGGGCTACGTGATGTCTTCACCTGCCGTT
TGTGCGCACGTGTGGGTACGTGCTCTCCTTCGCCGGGGCCCCCCGTCGCC
TTGGAGGCATCAGATCAGGGCACGCCGAACAAAAATATCATCTGCGTTTT
TTCTTGGGGTTAGGGTTAGGTGGATGATCAGAAAAGACGTGATGATGCCT
AGCAAAATGTAGCGGACGACAAAAATAGACAGACAGGCTCAAGAGGCATC
GAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAAGAGAGAGAGGATGA
TGTGGCGGCAGGCAGATGATACGCCTGCCTGCTGCTGTTGGCGCCAACAT
ATTGTCGTTATTCCTTACCTCGTATTTCGTTTCTCCCCGTTCCGACATAG
AGCGAAGACGAAGGAAGGACCAGGACTGCTAGCGGCGGCCGGCGGCCCAA
CAAGAAGCAGAAGACGGCCGCTGGCACGCACAGGGCAAAGACGACGGCGG
CGGCAAAGGGGAGGGGGCGGGGCGGAGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1074:23076..25404+

>mRNA_E-siliculosus-1a_F_contig1074.524.1 ID=mRNA_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1074:23076..25404+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCGGTAGGGGTAGCAGCGGTCGGGTGCGGAGGAAGCCCCAGACGGT
TTACGACACCGCCCCCCTAGCGTCCGAGGAGCAGCTGTCTCAGCAGATGA
CCGGTAGGGGTAGCAGCGGTCGGGTGCGGAGGAAGCCCCAGACGGTTTAC
GACACCGCCCCCCTAGCGTCCGAGGAGCAGCTGTCTCAGCAGAGCGAAGA
CGAAGGAAGGACCAGGACTGCTAGCGGCGGCCGGCGGCCCAACAAGAAGC
AGAAGACGGCCGCTGGCACGCACAGGGCAAAGACGACGGCGGCGGCAAAG
GGGAGGGGGCGGGGCGGAGCGAGCGAAGACGAAGGAAGGACCAGGACTGC
TAGCGGCGGCCGGCGGCCCAACAAGAAGCAGAAGACGGCCGCTGGCACGC
ACAGGGCAAAGACGACGGCGGCGGCAAAGGGGAGGGGGCGGGGCGGAGCG
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