mRNA_E-siliculosus-1a_F_contig1073.521.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Match: D8LTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU4_ECTSI) HSP 1 Score: 2294 bits (5944), Expect = 0.000e+0 Identity = 1266/1482 (85.43%), Postives = 1290/1482 (87.04%), Query Frame = 1
Query: 1 HGQPRPPANFPEFEGIDAERKRRFSAGDIFGGRTTASRLSYSAAEWGPLGTRSARRVVPSVGNEFPSWSDNNHRRNDDXXXXKXXDNSNINPSGEERHSDEQANTTPREPRRSPGDQGLALLREHPPAAQQDWPRTPPPTVPYDMLARDGWKIDSSPSIPSPCSGRRRRRASWSGPRDSRRPDDEQSSECQEVSPRAASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHEGVRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSDALFAVADNWTETVRAKDYIEFLCLLWERVRPDVLFRPPPLEPESDDPPTAPSRHKGNHTAAAAKKIGRRNQKARRKNWRNDGDNVYSRLHEKSRKAANLLGIGDERWGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPQTPDGLQQLCIPGFRPKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDGARGIHRGGGKGESSGGAKEXXXXXXXXXXXXXXXXXXXXXXRTRVTGILKEADRQRDVRTGGXXXXXXXXXXXXXEKEEMESIWDFITRNVPVNSRERDAFILFVERKQADLLDNNNNNINNKNYGRNPDVGAGDQTKLALGRPTSSPSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAWKSGQEGMAPAEYGAAFIGPPQARDRGARDSFLAYAIANGWGTRAGGAHSQQTLDGVAAEWRRGRGRCPEMGALWEVLRDLLWDEAEDAIGEALRDGVDLYSIPHRLLHDPPRVRQGHPSSSSSSIRRSSARPVVLLSPRQRGDYDH-QQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGLDRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTVISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPATGLTGGDEGTLSPAPSPPRTGMIISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAADKADETLDDRVIFGGDLQEPGRVEGGATRGSVGGQVA-PRRKRVRFTVRVREVGPPRVVLEGRWYSLPFGTDTGGGMTGPQPPAAFATLRLPTPLKVTRWGPDSYPEDPFGDRDVSVFAGEEGRPGVVDSETLVTLQARHSTSDPDGVDIYCGTSPRXXXXXXXXXXXXXXXXXXXXXXXXXAARLPVAPAPSQSVDGGGRSENNGTRGENDAAPGHRQPGDNHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGTTRGGTINIKARARKRVTRLIEDQFVLKQLEFAQDFHRRFCPPGDDDERVPVLGSGRACQGVHTRPFLLASRRISPSQNEYTWRGTNAEGLVEVLRDSNRPGRVSTRYTETLQVCRLVF 4440
HGQPRPPANFPEFEG+DAERKRRFSAGDIFGGR TASRL YSAAEWGPLGTRSARRV SVGNE P WSDNNH XXXX XX SNIN S EERH+DEQANTT REP SPGDQGL LLREHP AAQQD P TPPPTVPYD LARDG KID PSIPSPCSGRRRRRASWSGPRDSRRPDDE+SSEC EVSPR ASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKH+G+RAAIERGWWPYLPLRWVILNDQHVLKILPRQGY+LLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQ+LGRAGITLGAFS+ALFAVADNWTETVRA DYIEFLC+LWERVRPDVLFRPPPL+PESDDPPTAPS+HKGNH AAAA KIGRRNQKARRKN DGD+ Y RLHE SRKAAN+LGIGDERW XXXXXXX LPPPQTPDGLQQL IPGFR KEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDG RGIHRGGG+GE+SGGAKE XXXXXXXXXXXXXXXXXXXX TRVTGILKEADRQRDVRTGG EKEEMESIWDFITRNVPVNSRERDAFILFVERKQ DLLDNNNN INNKNYGRNPDVG GDQTK ALGRP SSPSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAW+SGQEGM PAEYGAAFIGPP+ R SFLAYAIANGWGTRAGG HSQQTLDGVAAEWRRG GRCPEM ALWEVLRDLLWDEAE AIGEAL DGVDLYSIPHRLLHDPPR RQGH SSSSSIRR+SARPV LLSPRQRGDYDH QQRHRRASTAPASTDGAAA EFDG GV GGDNG DRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPT ISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPA GL GGDEGTLSPAPSPPRTG +ISSPWDGVRGYTSPRPATASASKPWKPVPPA XXXXXXXLAPAFDGSGIGILAA +ADETLDDR IFGG LQEPGRVEGGATRGSVGGQVA PRRKRVRFTVRVR VGPPRVVLEGRWYSLPFGTDTGGG TGP P AAFATLRLPTPL+ TRWGPDSYPEDPFGD DVSVFAGEE R G VDSETLVTLQARHST DPD VDIYCGTSPR XXXXXX AAR+P APAPSQ NHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGT RGGTINIK VTRLI+DQFVLKQLEFAQDFHRRFCPPGDDDERVPVLGSGRACQGVHTRPFLLASRRISPSQNEY+WRGTN EGLVEVLRDSNRPGRV TRYTETLQVCRLVF
Sbjct: 21 HGQPRPPANFPEFEGVDAERKRRFSAGDIFGGRATASRLYYSAAEWGPLGTRSARRVAHSVGNEIPPWSDNNHXXXXXXXXXXXXXXSNINLSREERHTDEQANTTSREPHWSPGDQGLTLLREHPLAAQQDGPGTPPPTVPYDTLARDGRKIDYPPSIPSPCSGRRRRRASWSGPRDSRRPDDEESSECHEVSPRPASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHKGIRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYILLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQELGRAGITLGAFSEALFAVADNWTETVRANDYIEFLCVLWERVRPDVLFRPPPLKPESDDPPTAPSQHKGNHAAAAANKIGRRNQKARRKNRPKDGDDDYLRLHEMSRKAANVLGIGDERWRGGGXXXXXXXGREGEALDDNRRAPPTRLPPPQTPDGLQQLRIPGFRSKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDGLRGIHRGGGRGETSGGAKENQXXXXXXXXXXXXXXXXXXXXXTRVTGILKEADRQRDVRTGGGGGYRPKEEEAEVEKEEMESIWDFITRNVPVNSRERDAFILFVERKQPDLLDNNNN-INNKNYGRNPDVGVGDQTKPALGRPISSPSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAWRSGQEGMTPAEYGAAFIGPPK------RASFLAYAIANGWGTRAGGVHSQQTLDGVAAEWRRGSGRCPEMDALWEVLRDLLWDEAEGAIGEALSDGVDLYSIPHRLLHDPPRGRQGH-RSSSSSIRRNSARPV-LLSPRQRGDYDHHQQRHRRASTAPASTDGAAAAEFDGEGVGGGDNGFDRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGAVISSPWDGVRGYTSPRPATASASKPWKPVPPAPIHMAVVCPEXXXXXXXLAPAFDGSGIGILAATAQADETLDDRGIFGGVLQEPGRVEGGATRGSVGGQVATPRRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGGGTTGPHPLAAFATLRLPTPLRATRWGPDSYPEDPFGDLDVSVFAGEEDRSGFVDSETLVTLQARHSTCDPDAVDIYCGTSPRPRPSPADHTWRMPIGGXXXXXXSGVAARVPGAPAPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGTARGGTINIK------VTRLIDDQFVLKQLEFAQDFHRRFCPPGDDDERVPVLGSGRACQGVHTRPFLLASRRISPSQNEYSWRGTNTEGLVEVLRDSNRPGRVLTRYTETLQVCRLVF 1487
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Match: A0A6H5K4Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z7_9PHAE) HSP 1 Score: 1738 bits (4500), Expect = 0.000e+0 Identity = 1006/1244 (80.87%), Postives = 1031/1244 (82.88%), Query Frame = 1
Query: 4 GQPRPPANFPEFEGIDAERKRRFSAGDIFGGRTTASRLSYSAAEWGPLGTRSARRVVPSVGNEFPSWSDNNHRRNDDXXXXKXXDNSNINPSGEE--RHSDEQANTTPREPRRSPGDQGLALLREHPPAAQQDWPRTPPPTVPYDMLARDGWKIDSSPSIPSPCSGRRRRRASWSGPRDSRRPDDEQSSECQEVSPRAASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHEGVRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSDALFAVADNWTETVRAKDYIEFLCLLWERVRPDVLFRPPPLEPESDDPPTAPSRHKGNHTAAAAKKIGRRNQKARRKNWRNDGDNVYSRLHEKSRKAANLLGIGDERWGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPQTPDGLQQLCIPGFRPKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDGARGIHRGGGKGESSGGAKEXXXXXXXXXXXXXXXXXXXXXXRTRVTGILKEADRQRDVRTGGXXXXXXXXXXXXXEKEEMESIWDFITRNVPVNSRERDAFILFVERKQADLLDNNNNNINNKNYGRNPDVGAGDQTKLALGRPTSSPSPKRPAAXXXXXXXXXXXXXXXXXTV-----VRRYRTQEATWERARRQTVPSRALGELLEAWKSGQEGMAPAEYGAAFIGPPQARDRGARDSFL----AYAIANGWGTRAGGAHSQQTLDGVAAEWRRGRGRCPEMGALWEVLRDLLWDEAEDAIGEALRDGVDLYSIPHRLLHDPPRVRQGHPSSSSS--SIRRSSARPVVLLSPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGLDRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTVISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPATGLTGGDEGTLSPAPSPPRTGMIISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAADKADETLDDRVIFGGDLQEPGRVEGGATRGSVGGQVAPRRKRVRFTVRVREVGPPRVVLEGRWYSLPFGTDTGGGMTGPQPPAAFATLRLPTPLKVTRWGPDSYPEDPFGDRDVSVFAGEEGRPGVVDSETLVTLQAR 3696
GQPRPPANF EFEG+DAER RRFSAGDIFG R TASRLSYSAAEWGPLGTRSARRVVPSVGNEFP HR+ DD X XX SNI+PS EE RH+DEQANTTPREPRRSPGDQGLALLREHPPAAQQD P TPPPTVPYDMLA DG KIDS PSI SPCSG+RRRRASW GPR SRR D+EQ SEC + SPRAASVPP LQLRWERQGVSGR YQNDGNPSLYRKK GYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFS+ALFAVADNWTETVR+KDYIEFLCLLWERVRPDVLFRP PL+PESDDPP IGRRNQKARRKNW NDGD+ SRLHEKS KAAN+LGIGDERW XXXXXXXX LPPPQTPDGLQQL IPGFRPKEAQRAAWVR+KQRRIVDPGRG+LL PEGMDGARGIHRGGGKGE+SG XXXXXXXXXXXXXXXXXX RTRVTGILKEADRQRDVRTGG E E+MESIWDFITR DAFILFVERK+ DLLDNNNN INNKNYGRN DVGAGDQTKLALGRP SSPSPKRPAAXXXXXXXXXXXXXXXXX VRRYRTQEATWERARRQTVP+RALGELLEAW+SGQEGM PAEYGAAFIGP QARDRGA + +YAIANGWGTRAGG HSQQTLDGVAAEWRRGRGRCPEM ALWEVLRDLLWDEAEDAI EAL DGVDLYSIPHRLLHDPPR RQGH SSSSS SIRRSS RPV L SPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNG DRHGGG+GP GRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHD GSRA GRSNDNGIPT ISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPA GL GGDEGTLSPAPSPPRTG +ISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAA D+ADETLDDR IFGGDLQEP RV GAT GSVG QVAP RKRVRFTVRVR VGPPRVVLEGRWYSLPFGTDTG GMTGP P A FATLRLPTPLK TRWGPDSYP DPFGDRDVSVF+GEE RPG VDS TLVTLQ R
Sbjct: 18 GQPRPPANFLEFEGVDAERTRRFSAGDIFGSRATASRLSYSAAEWGPLGTRSARRVVPSVGNEFPPC----HRKYDDDNEXXXXXXSNISPSREEVHRHTDEQANTTPREPRRSPGDQGLALLREHPPAAQQDEPGTPPPTVPYDMLACDGRKIDSPPSILSPCSGQRRRRASWPGPRGSRRRDNEQPSECHKASPRAASVPPSLQLRWERQGVSGRTYQNDGNPSLYRKK---------------------------------------------GYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSNALFAVADNWTETVRSKDYIEFLCLLWERVRPDVLFRPLPLKPESDDPPXXXXXXXXXXXXXXXXXIGRRNQKARRKNWGNDGDDDNSRLHEKSPKAANVLGIGDERW-RGGXXXXXXXXREGEALDDDRRAPPTRLPPPQTPDGLQQLRIPGFRPKEAQRAAWVRYKQRRIVDPGRGILLTPEGMDGARGIHRGGGKGENSGXXXXXXXXXXXXXXXXXXXXXXMGRRRTRVTGILKEADRQRDVRTGGGGGYRPKEEEVEVEMEKMESIWDFITRX--------DAFILFVERKRPDLLDNNNN-INNKNYGRNSDVGAGDQTKLALGRPNSSPSPKRPAAXXXXXXXXXXXXXXXXXXXXXXXXVRRYRTQEATWERARRQTVPARALGELLEAWRSGQEGMTPAEYGAAFIGPLQARDRGAAAWLMRGRVSYAIANGWGTRAGGCHSQQTLDGVAAEWRRGRGRCPEMDALWEVLRDLLWDEAEDAIDEALSDGVDLYSIPHRLLHDPPRGRQGHRSSSSSIRSIRRSSTRPV-LPSPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGFDRHGGGKGPEGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDTGSRARGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGKLISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAPDQADETLDDRGIFGGDLQEPARVVDGATTGSVGRQVAPTRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGEGMTGPHPLATFATLRLPTPLKATRWGPDSYPADPFGDRDVSVFSGEEDRPGFVDSATLVTLQVR 1201
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Match: A8J754_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J754_CHLRE) HSP 1 Score: 60.1 bits (144), Expect = 3.700e-5 Identity = 44/136 (32.35%), Postives = 63/136 (46.32%), Query Frame = 1
Query: 652 YQNDGNPSLYRKKKMAARRRLSKHEGVRAAIERGWWPYLP---LRWVILNDQHVLKILPRQGYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSDALFAVADNWTETVRAKDYIEFL 1050
Y GN +Y + + ARR + H V A+ R WW +LP R V+L + L +LPR G + P D AE ++ +D KGLP + F DA+F +AD W++TV +Y E L
Sbjct: 271 YAKQGNAEMYTEDALLARRAVRTHPAVVEAV-RAWWRWLPKSSTRVVVLGEADELVLLPRFG---------LPSDPDYDPAE-------DWLDDNKGLPY------MDFPNFFDAMFELADMWSDTVAGPEYAELL 383 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1073.521.1 >prot_E-siliculosus-1a_F_contig1073.521.1 ID=prot_E-siliculosus-1a_F_contig1073.521.1|Name=mRNA_E-siliculosus-1a_F_contig1073.521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1481bp HGQPRPPANFPEFEGIDAERKRRFSAGDIFGGRTTASRLSYSAAEWGPLGback to top mRNA from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1073.521.1 ID=mRNA_E-siliculosus-1a_F_contig1073.521.1|Name=mRNA_E-siliculosus-1a_F_contig1073.521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ >mRNA_E-siliculosus-1a_F_contig1073.521.1 ID=mRNA_E-siliculosus-1a_F_contig1073.521.1|Name=mRNA_E-siliculosus-1a_F_contig1073.521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8886bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |