mRNA_E-siliculosus-1a_F_contig1073.520.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: D8LTU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU5_ECTSI) HSP 1 Score: 303 bits (775), Expect = 2.280e-98 Identity = 157/159 (98.74%), Postives = 157/159 (98.74%), Query Frame = 2 Query: 59 MKFTAGSSGLVLGLVGFSQAFVTPPVTGLGGRVSAGRSAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREIR 535
MKFTAGSSGLVLGLVG SQAFVTPPVTGLGGRVSAGRSAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETD GISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREIR
Sbjct: 1 MKFTAGSSGLVLGLVGCSQAFVTPPVTGLGGRVSAGRSAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREIR 159
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A835ZB47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB47_9STRA) HSP 1 Score: 102 bits (255), Expect = 3.650e-22 Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 2 Query: 167 RSAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTH---LVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 523
R +A + P M+L A AA A +I + P + ++L + +QP + +++ ETREG YG Y V+V+E+ E D STFK KE TE+G++KY +VL +LL GSFVIPMVQYWWYIRD+D
Sbjct: 29 RVSARSQAPSMLL--GGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQ--EVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 146
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7S2CEE7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEE7_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.780e-17 Identity = 49/101 (48.51%), Postives = 72/101 (71.29%), Query Frame = 2 Query: 221 AGAAVAHLIGSNPINPEHLVSAKSQPTHLVAYK-ETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDD 520
AGAA A ++ S P++ L + + P + A K ET+EG+YG Y+VEV+E+A D STFK + T++G++KY +VL VLL GSF+IPM+QY+WY+R+D
Sbjct: 44 AGAAAAAVLSSQPMDTSMLSNMANVPMMVSATKYETKEGIYGEYQVEVKEQA--VDDARSTFKSAKATKKGKNKYVAVLGVLLVGSFLIPMLQYFWYVRED 142
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A1Z5K6I3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6I3_FISSO) HSP 1 Score: 85.9 bits (211), Expect = 4.680e-16 Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 2 Query: 221 AGAAVAHLIGSNPIN-PEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 523
AGA A I S+ + P + + PT ++A K REG+YG YE+++ E+ + D STFK +ET+ + KYT++LA+L+ GSF+IPM QYWWY++DDD
Sbjct: 39 AGAFAAFTIASSVLTMPPAANAVPAFPTQVLAEKVIREGVYGEYEIDLPEQ--KYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDDD 138
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7S2B691_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B691_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.170e-15 Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 2 Query: 308 VAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDD 520
VA KETREG+YG YEVE++ + + D TFK K++T +G+ KY +VL VLL GSFVIPM+QY+WY+R+D
Sbjct: 79 VAVKETREGVYGTYEVEIKPQ--DVDDAAGTFKSKDDTVKGKKKYIAVLGVLLFGSFVIPMLQYFWYVRED 147
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7R9WM32_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM32_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 4.120e-15 Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 2 Query: 257 PINPEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 523
P+ P + S+ T++VA K TR+G+YG YEV++ + + + STFK +ET+ + KYT++LA+L+ GSF++PM QY+WY+RDDD
Sbjct: 59 PMQPPAIYSS----TNMVAEKVTRQGMYGDYEVDLTQTVDDAE---STFKSAKETKTKKGKYTAILAILIVGSFIVPMAQYFWYVRDDD 140
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7S3L8Q2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8Q2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.610e-15 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 2 Query: 224 GAAVAHLIGSNPIN---PEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 523
GAA A LI S+ ++ P S + +VA K REG+YG YEV+V ++ D STFK +ET+ + KYT++LAVL+ GSF+IPM QY+WY+RDDD
Sbjct: 37 GAAAAALIASSVLSWAPPPADASFAFTSSQVVAEKVIREGVYGEYEVDVPDQV--YDDARSTFKSAKETKTKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 137
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7S2SKG2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKG2_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 4.880e-14 Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 2 Query: 218 FAGAAVAHLIGSNPI-NPEHLVSAKSQPTH-LVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 523
FA A++A + +PI P + S T +VA + TREGLY YEV+V+++ D ST+K +ET+ + KYT+++AVL+ GSF+IPM QY+WY+RDDD
Sbjct: 8 FAAASIASSLVLSPIAEPVDAMDVPSFGTSTVVAERVTREGLYREYEVDVEDQV--YDDARSTYKSAKETKTKKGKYTALIAVLVVGSFIIPMAQYFWYVRDDD 109
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7S2I237_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I237_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.110e-14 Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 2 Query: 305 LVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD-------REIR*AKGRSTGW 562
+VA K TREGLYG YEV++ + E D STFK +ET+ + KYT++LAVL+ GSF+IPM QY+WY++DD E+ + + GW
Sbjct: 120 VVAEKVTREGLYGSYEVDLVQ---EVDKAESTFKSAKETKSKKGKYTALLAVLVVGSFIIPMAQYFWYVKDDSSSDDFFAEEVPEPEPKKKGW 209
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Match: A0A7S1CZK7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZK7_CYCTE) HSP 1 Score: 77.4 bits (189), Expect = 6.070e-13 Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 2 Query: 305 LVAYKETREGLYGPYEVEVQERAPETDLGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREIR 535
+VA K REGLY YEV++ + + D STFK +ET+ + KYT++LA+L+ GSF+IPM QY+WY+RDDD R
Sbjct: 86 VVAEKVVREGLYRDYEVDLTQ---DVDDARSTFKSAKETKTKKGKYTALLAILVVGSFIIPMAQYFWYVRDDDSSDR 159 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1073.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1073.520.1 >prot_E-siliculosus-1a_F_contig1073.520.1 ID=prot_E-siliculosus-1a_F_contig1073.520.1|Name=mRNA_E-siliculosus-1a_F_contig1073.520.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=160bp MKFTAGSSGLVLGLVGFSQAFVTPPVTGLGGRVSAGRSAASASGPRMMLPback to top mRNA from alignment at E-siliculosus-1a_F_contig1073:8446..13880+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1073.520.1 ID=mRNA_E-siliculosus-1a_F_contig1073.520.1|Name=mRNA_E-siliculosus-1a_F_contig1073.520.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5435bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:8446..13880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1073:8446..13880+ >mRNA_E-siliculosus-1a_F_contig1073.520.1 ID=mRNA_E-siliculosus-1a_F_contig1073.520.1|Name=mRNA_E-siliculosus-1a_F_contig1073.520.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:8446..13880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |