mRNA_E-siliculosus-1a_F_contig10725.518.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10725.518.1
Unique NamemRNA_E-siliculosus-1a_F_contig10725.518.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10725.518.1 vs. uniprot
Match: D8LBB2_ECTSI (Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB2_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 1.400e-76
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:   85 MDYHQHRQGGGKLYAQAPS-GDHASIVSSIAPFDTVCSGGSTSTSSSNARRSLDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ 456
            M+YHQHRQGGGKLYAQ PS GDHASIVSSIAPFDTVCSGGS+ST+SSNARR LDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIH+WQ
Sbjct:    1 MEYHQHRQGGGKLYAQTPSSGDHASIVSSIAPFDTVCSGGSSSTTSSNARRILDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHQWQ 125
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BLAST of mRNA_E-siliculosus-1a_F_contig10725.518.1 vs. uniprot
Match: A0A6H5J7K6_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.370e-48
Identity = 79/91 (86.81%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:  184 TVCSGGSTSTSSSNARRSLDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ 456
            TV SG          RRSLDESEVL CINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ
Sbjct:    3 TVSSGXXXXXXXXXTRRSLDESEVLCCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10725.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB2_ECTSI1.400e-7694.40Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus sili... [more]
A0A6H5J7K6_9PHAE2.370e-4886.81SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10725contigE-siliculosus-1a_F_contig10725:1225..1845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size456
Model size459
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.ADK
EggNOG OGsCOG2340@1,KOG3017@2759
EggNOG free text desc.peptidase inhibitor activity
Seed eggNOG ortholog2880.D8LBB2
Seed ortholog evalue8.8e-62
Seed ortholog score243.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.2578757-CDS-E-siliculosus-1a_F_contig10725:1226..14991622927574.2578757-CDS-E-siliculosus-1a_F_contig10725:1226..1499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10725 1227..1499 -
1696318593.075637-CDS-E-siliculosus-1a_F_contig10725:1226..14991696318593.075637-CDS-E-siliculosus-1a_F_contig10725:1226..1499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10725 1227..1499 -
1622927574.2739286-CDS-E-siliculosus-1a_F_contig10725:1662..18451622927574.2739286-CDS-E-siliculosus-1a_F_contig10725:1662..1845Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10725 1663..1845 -
1696318593.085164-CDS-E-siliculosus-1a_F_contig10725:1662..18451696318593.085164-CDS-E-siliculosus-1a_F_contig10725:1662..1845Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10725 1663..1845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10725.518.1prot_E-siliculosus-1a_F_contig10725.518.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10725 1227..1845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10725.518.1

>prot_E-siliculosus-1a_F_contig10725.518.1 ID=prot_E-siliculosus-1a_F_contig10725.518.1|Name=mRNA_E-siliculosus-1a_F_contig10725.518.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
VNFFTYIALLAHSHPTSLSSSYTAAPTPMDYHQHRQGGGKLYAQAPSGDH
ASIVSSIAPFDTVCSGGSTSTSSSNARRSLDESEVLRCINEYRREHGAPM
LRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHR
WQ
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mRNA from alignment at E-siliculosus-1a_F_contig10725:1225..1845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10725.518.1 ID=mRNA_E-siliculosus-1a_F_contig10725.518.1|Name=mRNA_E-siliculosus-1a_F_contig10725.518.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=621bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10725:1225..1845- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGAACTTTTTTACATACATCGCTCTACTCGCGCATTCTCACCCCACGTC
CCTGTCTTCATCGTACACGGCGGCCCCTACGCCTATGGACTACCACCAGC
ACCGACAAGGAGGCGGTAAACTCTACGCACAAGCGCCTTCGGGGGACCAT
GCCTCGATTGTGTCTTCAATCGCTCCGTTCGATGTGGGTGACAAAATCGA
ATCTGAGCGTAGCGTACTTAGACTACATGTAGTTGTTGGGTACCTGTAGC
CGGGGGTCGTATTGGCGGCAGGCCGTAGTGGCGATACATTGGACCACTCA
GCTGTGCTTGACCAGCAAGTCCACTCTTTGTGTCGTGTGTCTACAGACTG
TGTGCTCGGGTGGCAGCACCAGCACCAGCAGCAGCAACGCCAGGAGAAGC
CTAGACGAGTCCGAGGTGCTTCGCTGCATCAACGAGTACCGCAGGGAGCA
CGGAGCCCCGATGCTGCGGTGGAGCTCGGCGTGCGCCCGCGAAGCTCAGC
GGCGAGCCAGCCACGAGTCCGGGCCGAGCGCCGAGTACGGCGAGAATCTT
GCCAGGAGCACGGATCACAGCTGGAGAGATCCAACGATAGCTTGTATCGG
CTCCATCCATCGGTGGCAGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10725:1225..1845-

>mRNA_E-siliculosus-1a_F_contig10725.518.1 ID=mRNA_E-siliculosus-1a_F_contig10725.518.1|Name=mRNA_E-siliculosus-1a_F_contig10725.518.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10725:1225..1845- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGAACTTTTTTACATACATCGCTCTACTCGCGCATTCTCACCCCACGTC
CCTGTCTTCATCGTACACGGCGGCCCCTACGCCTATGGACTACCACCAGC
ACCGACAAGGAGGCGGTAAACTCTACGCACAAGCGCCTTCGGGGGACCAT
GCCTCGATTGTGTCTTCAATCGCTCCGTTCGATGTGAACTTTTTTACATA
CATCGCTCTACTCGCGCATTCTCACCCCACGTCCCTGTCTTCATCGTACA
CGGCGGCCCCTACGCCTATGGACTACCACCAGCACCGACAAGGAGGCGGT
AAACTCTACGCACAAGCGCCTTCGGGGGACCATGCCTCGATTGTGTCTTC
AATCGCTCCGTTCGATACTGTGTGCTCGGGTGGCAGCACCAGCACCAGCA
GCAGCAACGCCAGGAGAAGCCTAGACGAGTCCGAGGTGCTTCGCTGCATC
AACGAGTACCGCAGGGAGCACGGAGCCCCGATGCTGCGGTGGAGCTCGGC
GTGCGCCCGCGAAGCTCAGCGGCGAGCCAGCCACGAGTCCGGGCCGAGCG
CCGAGTACGGCGAGAATCTTGCCAGGAGCACGGATCACAGCTGGAGAGAT
CCAACGATAGCTTGTATCGGCTCCATCCATCGGTGGCAGACTGTGTGCTC
GGGTGGCAGCACCAGCACCAGCAGCAGCAACGCCAGGAGAAGCCTAGACG
AGTCCGAGGTGCTTCGCTGCATCAACGAGTACCGCAGGGAGCACGGAGCC
CCGATGCTGCGGTGGAGCTCGGCGTGCGCCCGCGAAGCTCAGCGGCGAGC
CAGCCACGAGTCCGGGCCGAGCGCCGAGTACGGCGAGAATCTTGCCAGGA
GCACGGATCACAGCTGGAGAGATCCAACGATAGCTTGTATCGGCTCCATC
CATCGGTGGCAG
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