prot_E-siliculosus-1a_F_contig100.51.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig100.51.1
Unique Name	prot_E-siliculosus-1a_F_contig100.51.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	389

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 565 bits (1455), Expect = 1.380e-189
Identity = 340/369 (92.14%), Postives = 346/369 (93.77%), Query Frame = 0

Query:   22 MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTPAPTAATGVGANGYRGAPAASASPVTQGPPNPPSSTSHRHTPQQSYSSQQYSPYTAAQQPQATPYAPPAQXXXXXXXXXXSYGAPSAPSTYSPQHQQXXXQQQ-PYGNVMPSGGGGSYTSSSYVQQGYAPPYGQTSTPPFSQQXXXXXXXXQHGYSSRGGARSGSSDXXXXXXXXXXXXXXXXXXXXXXXXXXASTNYYTSPANNVMPSPQSGPYGSIP 389
            MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVH+AMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEG+LPPGVTPAPTAA GVGA+GYRGAPAASASPVTQGPP PPSSTSHRHTPQQSYSSQQYSPY+AAQQPQATPYAPPAQXXXXXXXXXX       PSTYSPQHQQ XX    PYGNV+PSGGGGSYTS SY+QQGYAPPYGQTSTPPFSQQXXXXXXX QHGYSSRGGAR GSSDXXXXXXXXXXXXXXXXXX    XXX ASTNYYTSPANNVMP PQSGPYGSIP
Sbjct:    1 MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGSLPPGVTPAPTAAPGVGADGYRGAPAASASPVTQGPPTPPSSTSHRHTPQQSYSSQQYSPYSAAQQPQATPYAPPAQXXXXXXXXXXXXXXXXXPSTYSPQHQQQXXXXXXPYGNVIPSGGGGSYTSPSYIQQGYAPPYGQTSTPPFSQQXXXXXXXGQHGYSSRGGARGGSSDXXXXXXXXXXXXXXXXXXYSRPXXXHASTNYYTSPANNVMPQPQSGPYGSIP 369

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.970e-43
Identity = 99/126 (78.57%), Postives = 100/126 (79.37%), Query Frame = 0

Query:    1 FRQQPAR-AGTASRQTSSRRRTMNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 125
            FRQ+PAR AGTAS QTSSRRRTMNPNK                        DKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ
Sbjct:   24 FRQKPARSAGTASGQTSSRRRTMNPNKXXXXXXXXXXXXXXXXXXXXXXXXDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.350e-36
Identity = 71/122 (58.20%), Postives = 88/122 (72.13%), Query Frame = 0

Query:   38 EGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIG 159
            E  D  KR RD    +LRPG   P NVLLVRV++I +PV + AL  IFSRFG+V K+V+FDKGSG QALVQ A+   A  A ++ D+Q+MY+ CN IRVGYSNL N+TVK N++RSWDF  G
Sbjct:   42 EDRDHAKRPRDD-QPMLRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNLNNITVKQNSDRSWDFTTG 162

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 134 bits (338), Expect = 1.710e-31
Identity = 69/116 (59.48%), Postives = 81/116 (69.83%), Query Frame = 0

Query:   44 KRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIG 159
            KRARD     LRPG   P NV LVR+++I +P TI AL  IF RFG V KIV FDKGSG QAL+Q  +V  A  A +A DMQ+MY+ CN IRVG+SNL  +TVK NT+RSWDF  G
Sbjct:   18 KRARDE-QSSLRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNLTEITVKNNTDRSWDFTTG 132

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.800e-26
Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = 0

Query:   54 LRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPG 169
            LRPG  +P NV+L R+TD + PVT+ AL  +FS +G V KIVMF+KG+G+QALVQ  +V +A +A+E AD + MY+  NLIRVGYS   ++ V+ NT+R+WD+      EG+ P G
Sbjct:  273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDYTKKKTSEGSAPAG 388

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7J6SYV6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SYV6_PEROL)

HSP 1 Score: 104 bits (260), Expect = 3.520e-21
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 0

Query:   56 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTPAPT 175
            P    P  +LL  +T++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+A+V TA  A E  D Q +Y+GCN I+V YS+L  + +K N ERSWDF     L G++  G +  P+
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7J6LFE9_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE9_PEROL)

HSP 1 Score: 104 bits (260), Expect = 9.140e-21
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 0

Query:   56 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTPAPT 175
            P    P  +LL  +T++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+A+V TA  A E  D Q +Y+GCN I+V YS+L  + +K N ERSWDF     L G++  G +  P+
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: C5L0S5_PERM5 (Polypyrimidine tract binding protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L0S5_PERM5)

HSP 1 Score: 104 bits (260), Expect = 1.010e-20
Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = 0

Query:   56 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPG 169
            P    P  +LL  +T++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+A+V TA  A E  D Q +Y+GCN I+V YS+L  + VK N ERSWDF     L G +  G
Sbjct:  142 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEVKHNNERSWDFTNPSLLPGGMEAG 255

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7J6MLJ2_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLJ2_PERCH)

HSP 1 Score: 103 bits (258), Expect = 1.620e-20
Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 0

Query:   56 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTP 172
            P    P ++LL  +T++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+A++ TA  A    D Q +Y+GCN I+V YS+L  + VK N ERSWDF     + G  P  +TP
Sbjct:  142 PDSNPPNHILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADLETANIAKAQLDGQNIYAGCNTIKVQYSSLPQLEVKQNNERSWDFTNPSLISGPGPSTLTP 258

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7S0UA89_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UA89_HEMAN)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-18
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 0

Query:   56 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDF 156
            P     GN+LLV VT++VHP+T+  + QI  + G ++KI +F K   +Q LVQ ++  +A  A EA   + +Y+ CN + + YSNLQ+VTV  NTERS DF
Sbjct:   10 PSGPDSGNILLVTVTNVVHPMTVDVVTQIMQKHGTLEKINIFSKHGKTQCLVQFSSPESAAEALEALQGKNVYNNCNTLHIIYSNLQDVTVHQNTERSHDF 110

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZ42_9PHAE	1.380e-189	92.14	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FN53_ECTSI	2.970e-43	78.57	PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=...	[more]
A0A7S2XYL8_9STRA	1.350e-36	58.20	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7S3UWL0_HETAK	1.710e-31	59.48	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]
A0A4D9D0W9_9STRA	3.800e-26	50.86	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A7J6SYV6_PEROL	3.520e-21	40.83	Uncharacterized protein n=2 Tax=Perkinsus TaxID=28...	[more]
A0A7J6LFE9_PEROL	9.140e-21	40.83	Uncharacterized protein n=5 Tax=Perkinsus olseni T...	[more]
C5L0S5_PERM5	1.010e-20	42.98	Polypyrimidine tract binding protein, putative n=1...	[more]
A0A7J6MLJ2_PERCH	1.620e-20	41.03	Uncharacterized protein n=1 Tax=Perkinsus chesapea...	[more]
A0A7S0UA89_HEMAN	1.160e-18	44.55	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 62..161 e-value: 2.5E-23 score: 84.1
IPR021790	PTBP1, RNA recognition motif 2-like	PFAM	PF11835	RRM_8	coord: 62..138 e-value: 9.3E-8 score: 32.2
None	No IPR available	PANTHER	PTHR15592:SF18	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L	coord: 50..210
None	No IPR available	PANTHER	PTHR15592	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	coord: 50..210
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 58..154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig100	contig	E-siliculosus-1a_F_contig100:1442..5107 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig100.51.1	mRNA_E-siliculosus-1a_F_contig100.51.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig100 1442..5107 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig100.51.1 ID=prot_E-siliculosus-1a_F_contig100.51.1|Name=mRNA_E-siliculosus-1a_F_contig100.51.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=389bp
FRQQPARAGTASRQTSSRRRTMNPNKRPPPSSSTGTFEGGDATKRARDHP
DKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKG
SGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNT
ERSWDFNIGPPLEGALPPGVTPAPTAATGVGANGYRGAPAASASPVTQGP
PNPPSSTSHRHTPQQSYSSQQYSPYTAAQQPQATPYAPPAQQHQTYTPPQ
QSYGAPSAPSTYSPQHQQPQHQQQPYGNVMPSGGGGSYTSSSYVQQGYAP
PYGQTSTPPFSQQPYNPQPYGQHGYSSRGGARSGSSDDNGGASGSNGITA
AGGGSYSRPPPPHASTNYYTSPANNVMPSPQSGPYGSIP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR021790	PTBP1_RRM
IPR012677	Nucleotide-bd_a/b_plait_sf