mRNA_E-siliculosus-1a_F_contig100.51.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE) HSP 1 Score: 565 bits (1455), Expect = 1.380e-189 Identity = 340/369 (92.14%), Postives = 346/369 (93.77%), Query Frame = 1 Query: 64 MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTPAPTAATGVGANGYRGAPAASASPVTQGPPNPPSSTSHRHTPQQSYSSQQYSPYTAAQQPQATPYAPPAQXXXXXXXXXXSYGAPSAPSTYSPQHQQXXXQQQ-PYGNVMPSGGGGSYTSSSYVQQGYAPPYGQTSTPPFSQQXXXXXXXXQHGYSSRGGARSGSSDXXXXXXXXXXXXXXXXXXXXXXXXXXASTNYYTSPANNVMPSPQSGPYGSIP 1167 MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVH+AMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEG+LPPGVTPAPTAA GVGA+GYRGAPAASASPVTQGPP PPSSTSHRHTPQQSYSSQQYSPY+AAQQPQATPYAPPAQXXXXXXXXXX PSTYSPQHQQ XX PYGNV+PSGGGGSYTS SY+QQGYAPPYGQTSTPPFSQQXXXXXXX QHGYSSRGGAR GSSDXXXXXXXXXXXXXXXXXX XXX ASTNYYTSPANNVMP PQSGPYGSIP Sbjct: 1 MNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGSLPPGVTPAPTAAPGVGADGYRGAPAASASPVTQGPPTPPSSTSHRHTPQQSYSSQQYSPYSAAQQPQATPYAPPAQXXXXXXXXXXXXXXXXXPSTYSPQHQQQXXXXXXPYGNVIPSGGGGSYTSPSYIQQGYAPPYGQTSTPPFSQQXXXXXXXGQHGYSSRGGARGGSSDXXXXXXXXXXXXXXXXXXYSRPXXXHASTNYYTSPANNVMPQPQSGPYGSIP 369
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI) HSP 1 Score: 171 bits (433), Expect = 2.970e-43 Identity = 99/126 (78.57%), Postives = 100/126 (79.37%), Query Frame = 1 Query: 1 FRQQPAR-AGTASRQTSSRRRTMNPNKRPPPSSSTGTFEGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 375 FRQ+PAR AGTAS QTSSRRRTMNPNK DKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ Sbjct: 24 FRQKPARSAGTASGQTSSRRRTMNPNKXXXXXXXXXXXXXXXXXXXXXXXXDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.350e-36 Identity = 71/122 (58.20%), Postives = 88/122 (72.13%), Query Frame = 1 Query: 112 EGGDATKRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIG 477 E D KR RD +LRPG P NVLLVRV++I +PV + AL IFSRFG+V K+V+FDKGSG QALVQ A+ A A ++ D+Q+MY+ CN IRVGYSNL N+TVK N++RSWDF G Sbjct: 42 EDRDHAKRPRDD-QPMLRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNLNNITVKQNSDRSWDFTTG 162
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK) HSP 1 Score: 134 bits (338), Expect = 1.710e-31 Identity = 69/116 (59.48%), Postives = 81/116 (69.83%), Query Frame = 1 Query: 130 KRARDHPDKILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIG 477 KRARD LRPG P NV LVR+++I +P TI AL IF RFG V KIV FDKGSG QAL+Q +V A A +A DMQ+MY+ CN IRVG+SNL +TVK NT+RSWDF G Sbjct: 18 KRARDE-QSSLRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNLTEITVKNNTDRSWDFTTG 132
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA) HSP 1 Score: 120 bits (301), Expect = 3.800e-26 Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = 1 Query: 160 LRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPG 507 LRPG +P NV+L R+TD + PVT+ AL +FS +G V KIVMF+KG+G+QALVQ +V +A +A+E AD + MY+ NLIRVGYS ++ V+ NT+R+WD+ EG+ P G Sbjct: 273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDYTKKKTSEGSAPAG 388
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7J6SYV6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SYV6_PEROL) HSP 1 Score: 104 bits (260), Expect = 3.520e-21 Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 166 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTPAPT 525 P P +LL +T++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+A+V TA A E D Q +Y+GCN I+V YS+L + +K N ERSWDF L G++ G + P+ Sbjct: 146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7J6LFE9_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE9_PEROL) HSP 1 Score: 104 bits (260), Expect = 9.140e-21 Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 166 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTPAPT 525 P P +LL +T++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+A+V TA A E D Q +Y+GCN I+V YS+L + +K N ERSWDF L G++ G + P+ Sbjct: 146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: C5L0S5_PERM5 (Polypyrimidine tract binding protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L0S5_PERM5) HSP 1 Score: 104 bits (260), Expect = 1.010e-20 Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = 1 Query: 166 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPG 507 P P +LL +T++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+A+V TA A E D Q +Y+GCN I+V YS+L + VK N ERSWDF L G + G Sbjct: 142 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEVKHNNERSWDFTNPSLLPGGMEAG 255
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7J6MLJ2_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLJ2_PERCH) HSP 1 Score: 103 bits (258), Expect = 1.620e-20 Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 166 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGALPPGVTP 516 P P ++LL +T++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+A++ TA A D Q +Y+GCN I+V YS+L + VK N ERSWDF + G P +TP Sbjct: 142 PDSNPPNHILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADLETANIAKAQLDGQNIYAGCNTIKVQYSSLPQLEVKQNNERSWDFTNPSLISGPGPSTLTP 258
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Match: A0A7S0UA89_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UA89_HEMAN) HSP 1 Score: 90.9 bits (224), Expect = 1.160e-18 Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 1 Query: 166 PGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDF 468 P GN+LLV VT++VHP+T+ + QI + G ++KI +F K +Q LVQ ++ +A A EA + +Y+ CN + + YSNLQ+VTV NTERS DF Sbjct: 10 PSGPDSGNILLVTVTNVVHPMTVDVVTQIMQKHGTLEKINIFSKHGKTQCLVQFSSPESAAEALEALQGKNVYNNCNTLHIIYSNLQDVTVHQNTERSHDF 110 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig100.51.1 >prot_E-siliculosus-1a_F_contig100.51.1 ID=prot_E-siliculosus-1a_F_contig100.51.1|Name=mRNA_E-siliculosus-1a_F_contig100.51.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=389bp FRQQPARAGTASRQTSSRRRTMNPNKRPPPSSSTGTFEGGDATKRARDHPback to top mRNA from alignment at E-siliculosus-1a_F_contig100:1442..5107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig100.51.1 ID=mRNA_E-siliculosus-1a_F_contig100.51.1|Name=mRNA_E-siliculosus-1a_F_contig100.51.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:1442..5107- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:1442..5107- >mRNA_E-siliculosus-1a_F_contig100.51.1 ID=mRNA_E-siliculosus-1a_F_contig100.51.1|Name=mRNA_E-siliculosus-1a_F_contig100.51.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2334bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:1442..5107- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |