prot_E-siliculosus-1a_F_contig1071.508.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1071.508.1
Unique Nameprot_E-siliculosus-1a_F_contig1071.508.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length149
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1071.508.1 vs. uniprot
Match: D8LNC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.700e-40
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 0 
Query:   24 MVISSVSVVIISVPVLCFSAKAIRNACRAGGILSRIIIYLRRQAPSLPTTRAPRDAMEVLEEGLVSPPPSVLQLSFRSLSPKLRRAEERMFRAVRSMYAMLDQTLCGAPSSSSKAPMERMND 145
            MV++SVS V++SVPVL FS KA R+AC+ GGI+SRI+  LRR AP L   R PR+ ME++EEG+  PP  V+QL+F+ LSP+LRR E RM R V+SMY MLDQTL G  SSSSK PM+ MND
Sbjct:    1 MVVASVSAVVVSVPVLYFSVKAFRHACQEGGIMSRILANLRRLAPGLSAIREPRNPMEIMEEGISFPPLRVIQLTFKRLSPQLRRVELRMIRTVKSMYVMLDQTLLGPASSSSKGPMDSMND 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1071.508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNC0_ECTSI7.700e-4061.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..148
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1071contigE-siliculosus-1a_F_contig1071:2259..3200 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1071.508.1mRNA_E-siliculosus-1a_F_contig1071.508.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1071 650..3528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1071.508.1 ID=prot_E-siliculosus-1a_F_contig1071.508.1|Name=mRNA_E-siliculosus-1a_F_contig1071.508.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MFSISDVSAVWALVWAWIFANLAMVISSVSVVIISVPVLCFSAKAIRNAC
RAGGILSRIIIYLRRQAPSLPTTRAPRDAMEVLEEGLVSPPPSVLQLSFR
SLSPKLRRAEERMFRAVRSMYAMLDQTLCGAPSSSSKAPMERMNDHAQ*
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