mRNA_E-siliculosus-1a_F_contig107.506.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig107.506.1
Unique NamemRNA_E-siliculosus-1a_F_contig107.506.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: D7FJ07_ECTSI (Similar to LPS-responsive vesicle trafficking, beach and anchor containing isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ07_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 1.630e-165
Identity = 270/286 (94.41%), Postives = 270/286 (94.41%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC------------ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 822
            ILSCGYWDNGVRLHRVNS GKL LDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC            AS PEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATA APTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG
Sbjct: 1639 ILSCGYWDNGVRLHRVNSGGKLPLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCGTGSATATDAAEASTPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAVAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 1924          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A6H5KYR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR7_9PHAE)

HSP 1 Score: 504 bits (1299), Expect = 6.790e-161
Identity = 263/286 (91.96%), Postives = 266/286 (93.01%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC------------ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 822
            +LSCGYWDNGVRLHRVNSAGKL LDGSETGGH GAITCLAIAQESSLLVTGG+DATCRVWVVGNAPMASALGG SACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC            ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATA APTTINCLLTAGGG YLLAGGQDG+IRVHTLHDLCVLHTIDLQQHGGVTCMRMSP   XXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG
Sbjct: 2285 LLSCGYWDNGVRLHRVNSAGKLPLDGSETGGHCGAITCLAIAQESSLLVTGGRDATCRVWVVGNAPMASALGGASACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCGTGSPTATDAAEASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAVAPTTINCLLTAGGGGYLLAGGQDGVIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPDHEXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 2570          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: B7GC44_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GC44_PHATC)

HSP 1 Score: 177 bits (450), Expect = 6.300e-50
Identity = 96/240 (40.00%), Postives = 149/240 (62.08%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC----ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMS 708
            ++SCGYWD+GVR+H +++   L +  +E GGH G I CLA+AQ+ +L+VTGG+D TCRVWVV ++ +A AL        +    T  ++ + C HVL+GHE PITC+A+   LD V+SG+ +G+I +H L+ G +VR +       + P  +++A    G VVVH+  D+SLH +S+NG RLA+  A   +  L      E+++ GG  G + V +L DL +   +DL +HG V C+ ++
Sbjct:  102 LVSCGYWDHGVRVHGLDN--NLRVLATEAGGHRGPILCLAVAQDDALMVTGGEDCTCRVWVVDHSDLAVALSDGYVQTALGSANTG-ESVLSCCHVLWGHETPITCVALDSSLDVVISGSREGKICVHTLRRGEFVRFFTPPVSGGTPPAIARVALHPTGTVVVHA-RDQSLHAFSVNGVRLASVNAGEELYDLQFC--NEFVVTGGTRGQVCVRSLSDLQIQSVVDLSRHGPVHCLALT 335          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A6U2E064_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2E064_9STRA)

HSP 1 Score: 175 bits (444), Expect = 8.030e-50
Identity = 102/263 (38.78%), Postives = 144/263 (54.75%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMA---------SALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCA-------SIPEASQ----------LAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
            +LSCGYWDN ++ H V     L L  S  GGH GAI CL+I  E  L+VTGGQDATCRVW V    MA         +ALGG ++        +S + ++ C H+L+GH+APITCL+ S DLD VVSG+ DG + +H ++ G +VR+   +       S PE +           LA + HG  V H   D  L  Y++N  +L  A A   +N +    GGE L+ GG+   + + T+ DL V   +DL  HG + C++++P
Sbjct:   20 LLSCGYWDNTIKAHSVEG---LKLKCSGHGGHRGAINCLSIGDEGGLMVTGGQDATCRVWTVDWHDMAIALTDGYVQTALGGNAS-------SSSKERTLNCCHILWGHDAPITCLSFSSDLDAVVSGSVDGIVCVHTVRRGKFVRKIDTSKFFPDGGSSPEGTNSSNQKKLVRTLALNDHGTFVAHLENDM-LQSYTINAVKLCCADAGEKLNAMEMCSGGEMLVTGGESCHVVIRTVGDLIVRCVLDLSSHGPIRCIKLTP 271          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S2A7N3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7N3_TRICV)

HSP 1 Score: 174 bits (441), Expect = 1.630e-49
Identity = 101/250 (40.40%), Postives = 144/250 (57.60%), Query Frame = 1
Query:   10 CGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMV-CVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC----ASIPEAS-----------QLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
            CGYWD+ V+ H V+S   L L  SE GGH GA+ CL+I  +  L+VTGGQDATCRVWV+ +  M+ AL   +   V    GT+ ++S++ C HVL+GH AP+TCL+ S DLD VVSGA DG I +H ++ G ++R+       + +  AS           +LA + HG  V H   D  L  Y++NG +L  A A   +N +     GE L+ GG+   + + TL DL V   +DL  HG + C+ ++P
Sbjct:    1 CGYWDDTVKSHSVDS---LRLKCSENGGHRGAVNCLSIGSDGGLMVTGGQDATCRVWVIDHNDMSIAL---TDGYVQTALGTNDEDSILNCCHVLWGHSAPVTCLSFSSDLDVVVSGAMDGVICVHTVRQGKFIRKIHTGKFFSDVDSASTSSREKEVFVKKLALNDHGRFVAHL-EDGMLQSYTINGVKLGCADAGEKLNAMEICSDGEMLVTGGESCHVVIRTLSDLIVRCVLDLSTHGPIRCISITP 243          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S3PDC4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PDC4_9STRA)

HSP 1 Score: 184 bits (467), Expect = 4.010e-49
Identity = 102/243 (41.98%), Postives = 148/243 (60.91%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMV--CVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCASI----PEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
            ++SCGY+D+ V++H   S   L L  SE GGH G I CL+IA +  L+VTGGQDATCRVWVV +A MA AL   S   V    G S+    +  C HVL+GH+ P+TC+ ++ DLD +VSG+ DG + +H ++ G ++R +R  SI    P  +++A    G++VVH  +D  L+ Y++NG  LA   A   I+ +     GEY++ GG D  +R+ TL DL V   +DL  HG + C+ M+P
Sbjct: 1138 LVSCGYFDDTVKIHGTES---LDLVASENGGHRGPIRCLSIASDG-LMVTGGQDATCRVWVVNHADMAVAL---SDGYVQTALGASNDGEQLLSCCHVLWGHDTPLTCVDINSDLDVIVSGSEDGLVCVHNIRRGEFIRAFRPPSIGHCKPSVARIALDATGNMVVHM-SDGGLYSYTVNGVELAAINAGEIIHDMKICSDGEYIVTGGDDCQVRIRTLSDLTVRAVLDLTSHGPIRCIAMTP 1372          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S1UNE3_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNE3_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.300e-46
Identity = 97/244 (39.75%), Postives = 143/244 (58.61%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGG---TSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYR----CASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
            I+SCGYWD+ V++H V+    L L  S+TGGH G + CLA+  + +L+VTGG DATCRVWVV +  MA AL      +A G    +    +  ++C H+L+GH APITC+++S DLD VVSG+ DG + +H ++ G YVR  R      +I  A ++     GD  V +  D +LH Y++N   LA+  A   +N +L    G  L+ GG+ G I   ++ DL VL  +DL + G + C+  +P
Sbjct:  805 IVSCGYWDDTVKVHSVDG---LKLTCSDTGGHRGPVRCLALGDDGALMVTGGNDATCRVWVVDHPDMAVALSDGYVKTALG----EALDREKQLICCHILWGHVAPITCVSLSSDLDVVVSGSLDGAVCVHTVRRGTYVRTIRPLNRTNAINAARKITLHGTGDFCV-AMEDHTLHSYTVNDVHLASTDAGEALNDMLITSFGSVLVTGGELGWIVCRSVRDLLVLSVLDLSRQGPIRCLSTTP 1040          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S2SAH4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAH4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 6.090e-46
Identity = 98/250 (39.20%), Postives = 144/250 (57.60%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMV-CVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQ---YRCASIPEA---------SQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
             LSCGY+DN V+LH  +    L L  +E GGH GAI CL+I  +  L+VTGGQDATCRVW++ +A MA+AL        + KK   +K S++ C  VL+GHEA ++CL+ S DLD VVSG+ +G I +H  + G ++R    +    I +A          +LA + HG  V H   + SL  Y++NG +L  A A   +N +    GG+ L+ GG+   + + TL DL V   +DL++ G + C+  +P
Sbjct:  104 FLSCGYYDNTVKLHTFDG---LRLKCAENGGHRGAINCLSIGDDGGLMVTGGQDATCRVWIIDHADMATALTDGYVQTALGKKDNDAKESILNCCQVLWGHEAAVSCLSFSSDLDIVVSGSVNGVICVHTARRGSFIRSIWVHDFLKIAKAYGNNKGTAIRKLALNDHGTFVAHL-ENYSLLMYTVNGVKLGLADAGEKLNAMEIVPGGDLLVTGGERCQVVIRTLRDLGVRCIVDLKKQGPIRCISCTP 349          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S4NG05_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NG05_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.370e-45
Identity = 97/252 (38.49%), Postives = 140/252 (55.56%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKN-SMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCASI--------PEAS------QLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
            +LSCGYWDN ++ H V     L L  SE+GGH GAI C+++  E  L++TGG DATCRVW V    MA AL        +   G  SK  ++ C H+L+GH++PITCL+ S DLD VVSGA +G + +H ++ G +VR+   +          P  S      +LA + HG  V H   D  L  Y++N  +L  A A   +N +    GGE L+ GG+   + + T+ DL V   +DL  HG + C++++P
Sbjct: 2025 LLSCGYWDNAIKAHTVEG---LKLKCSESGGHSGAINCMSVGDEGGLMITGGHDATCRVWTVDWHDMAIALTDGYVQTALGANGRGSKEKNLNCCHILWGHDSPITCLSFSSDLDIVVSGAVNGIVCVHSVRRGKFVRKIDTSDFFLGNSSANPGRSHKTIVRKLALNDHGTFVAHL-EDGMLQCYTINSVKLCCADAGEKLNAMEICSGGEMLVTGGESCHVVIRTVGDLMVRCVLDLSSHGPIRCIKLTP 2272          
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S1D922_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D922_CYCTE)

HSP 1 Score: 164 bits (415), Expect = 2.430e-45
Identity = 89/246 (36.18%), Postives = 137/246 (55.69%), Query Frame = 1
Query:    1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCA---------SIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711
            ++SCGYWD+ V++H ++ +  L    S +GGH G I CL++    +L+VTGGQDATCRVWV+ +  MA AL        + +     +  + C HVL+GHE+P++ + +S DLD VVSG+ DG + +H  + G ++R  R           S P   ++A    G  VVH   D SLH  ++NG  L +  A  T+N +     GE L+ GG    + V T+ DL V   +D+ +HG + C+ ++P
Sbjct:   39 LVSCGYWDDTVKIHSIDGSRILC---SHSGGHRGPIRCLSVGSCGALMVTGGQDATCRVWVIYHPDMAVALSDGYVQTALGES-NDGEQRLTCCHVLWGHESPVSSVDLSSDLDVVVSGSLDGIVCVHSARRGKFIRSMRPRKPGHKRANLSSPAVRKIALDSSGIFVVHL-DDGSLHSCTINGANLCSVNAQETLNAMRITSNGEMLVTGGDKCQVVVRTVKDLRVCSMLDITRHGPIRCIALTP 279          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ07_ECTSI1.630e-16594.41Similar to LPS-responsive vesicle trafficking, bea... [more]
A0A6H5KYR7_9PHAE6.790e-16191.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7GC44_PHATC6.300e-5040.00Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6U2E064_9STRA8.030e-5038.78Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2A7N3_TRICV1.630e-4940.40Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3PDC4_9STRA4.010e-4941.98Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1UNE3_9STRA1.300e-4639.75Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S2SAH4_9STRA6.090e-4639.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4NG05_9STRA2.370e-4538.49Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1D922_CYCTE2.430e-4536.18Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig107contigE-siliculosus-1a_F_contig107:82579..83701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size825
Model size825
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG1787@1,KOG1787@2759
EggNOG free text desc.platelet formation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007033,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0016050,GO:0033298,GO:0044424,GO:0044444,GO:0044464,GO:0071840
KEGG Pathwayko04071,map04071
KEGG koko:K18953,ko:K22262
Seed eggNOG ortholog2880.D7FJ07
Seed ortholog evalue9.7e-144
Seed ortholog score516.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig107.506.1prot_E-siliculosus-1a_F_contig107.506.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig107 82579..83701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.6898713-CDS-E-siliculosus-1a_F_contig107:82578..829791622927572.6898713-CDS-E-siliculosus-1a_F_contig107:82578..82979Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 82579..82979 -
1696318592.1476412-CDS-E-siliculosus-1a_F_contig107:82578..829791696318592.1476412-CDS-E-siliculosus-1a_F_contig107:82578..82979Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 82579..82979 -
1622927572.7011364-CDS-E-siliculosus-1a_F_contig107:83015..831061622927572.7011364-CDS-E-siliculosus-1a_F_contig107:83015..83106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 83016..83106 -
1696318592.1611776-CDS-E-siliculosus-1a_F_contig107:83015..831061696318592.1611776-CDS-E-siliculosus-1a_F_contig107:83015..83106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 83016..83106 -
1622927572.7147632-CDS-E-siliculosus-1a_F_contig107:83368..837011622927572.7147632-CDS-E-siliculosus-1a_F_contig107:83368..83701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 83369..83701 -
1696318592.1709669-CDS-E-siliculosus-1a_F_contig107:83368..837011696318592.1709669-CDS-E-siliculosus-1a_F_contig107:83368..83701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 83369..83701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig107.506.1

>prot_E-siliculosus-1a_F_contig107.506.1 ID=prot_E-siliculosus-1a_F_contig107.506.1|Name=mRNA_E-siliculosus-1a_F_contig107.506.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=275bp
ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVT
GGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGH
EAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCASIPEASQL
AFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLL
AGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPDHEYLLAGSQDGE
VSIITDARKRMRMLDLALRRAFVG*
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mRNA from alignment at E-siliculosus-1a_F_contig107:82579..83701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig107.506.1 ID=mRNA_E-siliculosus-1a_F_contig107.506.1|Name=mRNA_E-siliculosus-1a_F_contig107.506.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1123bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:82579..83701- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTCTTTCATGTGGGTACTGGGACAATGGTGTTCGACTGCATCGTGTCAA CTCCGCCGGCAAGTTGTCCTTGGATGGTTCAGAAACGGGAGGACATTACG GTGCAATAACTTGCTTAGCGATTGCACAGGAGAGCTCGCTGCTGGTCACG GGGGGACAGGATGCCACCTGCCGAGTGTGGGTGGTGGGCAACGCCCCGAT GGCGTCCGCTCTGGGGGGGACCAGCGCTTGTGGTGTCATCCCAAAGAAGG GGACATCGAGCAAAAACTCCATGGTATGCGTGCACGTACTTTACGGGCAC GAAGCCCCGATCACGTGCCTGGCAGTCTCGGAGGTAAGCACCTTGTATCA TACGTGTCGAAAGTGTTCATTGCTATTCACTGTTGAGCATGTGTCTTTGG TTCATCTCTCTTTTTTTGTGTGTGTATCTTGGCACACTTAACGACCAGCA AATATTTCGTACTGATGTACAACTGTATCTTTTCGTTATTTCTATCGTCT ATGAATACATCCAACGTACGTTTTTGGTCGGCGCTCCGCACCACACCTCC AGCGCAGAATTTCGTAATCAAAGAAGTGAACCAATGCTGACGCAGGACCT GGATACCGTTGTGTCGGGGGCGAGCGATGGTCGGATAGTGCTGCACTGCT TGAAGAACGGCTGCTACGTACGACAGTACCGTTGCGGTACGGGCTCGGCA ACTGCTACGGACGCTGCGGAAGCCAGTATTCCGGAAGCCAGCCAACTGGC CTTTTCCCGCCACGGCGATGTAGTCGTGCACAGCTGGACTGACCGTTCTC TTCATCGATATAGCCTCAACGGGACCAGACTGGCGACTGCCGCGGCTCCT ACGACGATAAACTGTCTCTTGACAGCAGGGGGGGGGGAATACTTGTTGGC GGGGGGGCAAGACGGCCTGATTCGAGTGCACACCCTCCACGATCTGTGTG TGTTGCACACGATCGACTTGCAGCAGCATGGCGGAGTTACCTGCATGCGG ATGTCTCCGGACCACGAGTACCTACTGGCAGGCTCTCAGGACGGAGAGGT ATCAATCATTACCGACGCGAGAAAGCGAATGCGTATGCTTGACCTCGCTT TGCGGAGAGCATTTGTGGGCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:82579..83701-

>mRNA_E-siliculosus-1a_F_contig107.506.1 ID=mRNA_E-siliculosus-1a_F_contig107.506.1|Name=mRNA_E-siliculosus-1a_F_contig107.506.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:82579..83701- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTCTTTCATGTGGGTACTGGGACAATGGTGTTCGACTGCATCGTGTCAA
CTCCGCCGGCAAGTTGTCCTTGGATGGTTCAGAAACGGGAGGACATTACG
GTGCAATAACTTGCTTAGCGATTGCACAGGAGAGCTCGCTGCTGGTCACG
GGGGGACAGGATGCCACCTGCCGAGTGTGGGTGGTGGGCAACGCCCCGAT
GGCGTCCGCTCTGGGGGGGACCAGCGCTTGTGGTGTCATCCCAAAGAAGG
GGACATCGAGCAAAAACTCCATGGTATGCGTGCACGTACTTTACGGGCAC
GAAGCCCCGATCACGTGCCTGGCAGTCTCGGAGATTCTTTCATGTGGGTA
CTGGGACAATGGTGTTCGACTGCATCGTGTCAACTCCGCCGGCAAGTTGT
CCTTGGATGGTTCAGAAACGGGAGGACATTACGGTGCAATAACTTGCTTA
GCGATTGCACAGGAGAGCTCGCTGCTGGTCACGGGGGGACAGGATGCCAC
CTGCCGAGTGTGGGTGGTGGGCAACGCCCCGATGGCGTCCGCTCTGGGGG
GGACCAGCGCTTGTGGTGTCATCCCAAAGAAGGGGACATCGAGCAAAAAC
TCCATGGTATGCGTGCACGTACTTTACGGGCACGAAGCCCCGATCACGTG
CCTGGCAGTCTCGGAGGACCTGGATACCGTTGTGTCGGGGGCGAGCGATG
GTCGGATAGTGCTGCACTGCTTGAAGAACGGCTGCTACGTACGACAGTAC
CGTTGCGGACCTGGATACCGTTGTGTCGGGGGCGAGCGATGGTCGGATAG
TGCTGCACTGCTTGAAGAACGGCTGCTACGTACGACAGTACCGTTGCGCC
AGTATTCCGGAAGCCAGCCAACTGGCCTTTTCCCGCCACGGCGATGTAGT
CGTGCACAGCTGGACTGACCGTTCTCTTCATCGATATAGCCTCAACGGGA
CCAGACTGGCGACTGCCGCGGCTCCTACGACGATAAACTGTCTCTTGACA
GCAGGGGGGGGGGAATACTTGTTGGCGGGGGGGCAAGACGGCCTGATTCG
AGTGCACACCCTCCACGATCTGTGTGTGTTGCACACGATCGACTTGCAGC
AGCATGGCGGAGTTACCTGCATGCGGATGTCTCCGGACCACGAGTACCTA
CTGGCAGGCTCTCAGGACGGAGAGGTATCAATCATTACCGACGCGAGAAA
GCGAATGCGTATGCTTGACCTCGCTTTGCGGAGAGCATTTGTGGGCTAAC
CAGTATTCCGGAAGCCAGCCAACTGGCCTTTTCCCGCCACGGCGATGTAG
TCGTGCACAGCTGGACTGACCGTTCTCTTCATCGATATAGCCTCAACGGG
ACCAGACTGGCGACTGCCGCGGCTCCTACGACGATAAACTGTCTCTTGAC
AGCAGGGGGGGGGGAATACTTGTTGGCGGGGGGGCAAGACGGCCTGATTC
GAGTGCACACCCTCCACGATCTGTGTGTGTTGCACACGATCGACTTGCAG
CAGCATGGCGGAGTTACCTGCATGCGGATGTCTCCGGACCACGAGTACCT
ACTGGCAGGCTCTCAGGACGGAGAGGTATCAATCATTACCGACGCGAGAA
AGCGAATGCGTATGCTTGACCTCGCTTTGCGGAGAGCATTTGTGGGCTAA
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