mRNA_E-siliculosus-1a_F_contig107.505.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI) HSP 1 Score: 503 bits (1294), Expect = 3.390e-179 Identity = 269/273 (98.53%), Postives = 270/273 (98.90%), Query Frame = 1 Query: 1 MVSVHSLCLSLVYLGTVTSFVTPCAWKKVTGTARSTHSGQSTGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDSAEKPAAFAL 819
MVSVHSLCLSLVYLGTVTSFVTPCAW KVTGTARST SGQSTGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQAL+SPSTVRKILTAVDP VQSSYDSAEKPAAFAL
Sbjct: 1 MVSVHSLCLSLVYLGTVTSFVTPCAWNKVTGTARSTISGQSTGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAFAL 273
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA) HSP 1 Score: 289 bits (740), Expect = 4.570e-95 Identity = 163/264 (61.74%), Postives = 196/264 (74.24%), Query Frame = 1 Query: 28 SLVYLGTVTSFVTPCAWKKVTGTARSTHSGQSTGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDSAEKPAAFAL 819
+L + V +F+ P + V TARS S+ L MAY KVFVAGG+ GVGR V+++LV +G +VVA+VRREDA +EL AI+GV+AV+ DALDLKGVE LDGCDAAITTLGG+ RVDY GNRNVIESAGILG+TRV++VTSVGCG SR AISDQVY LEKAL AKT AE ML KYYTN+ WTIIRPGGL++ TG AILTE+ AG+I RADVAD+ V+AL + T +K+ TAVDP + SS+ A K AF L
Sbjct: 10 ALAAVSCVEAFLAPMS---VARTARS-----SSSLSMAYNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGS---SGENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAFPL 262
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC) HSP 1 Score: 283 bits (723), Expect = 2.050e-92 Identity = 162/273 (59.34%), Postives = 200/273 (73.26%), Query Frame = 1 Query: 1 MVSVHSLCLSLVYLGTVTSFVTPCAWKKVTGTARSTHSGQSTGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDSAEKPAAFAL 819
M+S SL LS +G ++FV P A GT R S ST L AY KVFVAGG +GVGR ++D+L+ QGSEVVALVR EDA EL AI+GV+A+ DA + K VE +DGCDAAITTLGGA D KRVDY GN NVIESAGILG+TRV++VTSVGCGSS+EA V++ L++ L AK AEN+L+KYYTN WTIIRPGGLKS+ ATG AILTEDT+A G I+R DVA LA++AL+S +T RK+LTA+DP + S+ ++ AFA+
Sbjct: 1 MLSTKSLLLSFALVGVTSAFVAPKA--PTFGTTRFPVS--STSLD-AYKKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATS-DGGKRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGKQVEAFAV 267
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA) HSP 1 Score: 273 bits (697), Expect = 1.570e-88 Identity = 142/233 (60.94%), Postives = 180/233 (77.25%), Query Frame = 1 Query: 121 STGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDSAEKPAAFAL 819
+T L Y VFVAGG+KGVGR VIDKL++QGS+VVALVR+E+ +L +I+GV+A+V DA D K VE +DGCDAAITTLGG+ + D R+DYAGN NVIESAGILG+ R+++VTSVGCGSS+EA + V++ L++ L AK AEN+L+KYYTNS W+IIRPGGLKS+ ATG AILTED K G I+R DVA L V+ L SP T RKILTA+DP ++S+ + + AFAL
Sbjct: 32 NTALFATYKNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQ-DTGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAFAL 263
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA) HSP 1 Score: 267 bits (682), Expect = 4.670e-86 Identity = 146/241 (60.58%), Postives = 180/241 (74.69%), Query Frame = 1 Query: 100 RSTHSGQSTGLRMA--------YGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGA--PEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDS 792
R S +TGLRMA Y KVFVAGG++GVGRAV+D L+ GSEVVALVR ++A+ EL A+ GV+ DA D K VE +DGCDAAITT+G P G+ KRVDY GN NVIE+AGILG+TRVV+VTS+GCGSS+EA V++VL+ L AK AEN+L+KYYTN WTI+RPGGLKS+ ATGTAILTE+ A G I+R DVADL VQAL+S +T RKIL+AVDPE+ +S ++
Sbjct: 35 RHATSPPATGLRMAGDAAPASKYSKVFVAGGSRGVGRAVVDGLLSAGSEVVALVRTDEAEAELSALDGVTVARGDAFDYKAVEGAMDGCDAAITTMGQGTDPVGENGKRVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDPEISASANA 275
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA) HSP 1 Score: 265 bits (677), Expect = 2.940e-85 Identity = 141/227 (62.11%), Postives = 175/227 (77.09%), Query Frame = 1 Query: 142 YGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDSAEKPA-AFAL 819
Y KVFVAGG+KGVGR V+DKLV G+ VVALVR E+A EL A+ GV+AV+ DA D K VE +DGCDAA++TLGG + +RVDY GN NVIE+AGILG+TRVV++TS+GCGSS+EA V++VL+ L AK AEN+L+KYYTN+ WTIIRPGGLKS+ ATG AILTED A G I+R DVA LA+QAL+SP T +KIL+AVDPE+ S+ + + AFAL
Sbjct: 53 YNKVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDPEITSAANVEGRVVEAFAL 279
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA) HSP 1 Score: 263 bits (672), Expect = 1.580e-84 Identity = 134/215 (62.33%), Postives = 170/215 (79.07%), Query Frame = 1 Query: 139 AYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSS 783
AY KVFVAGG+KGVGR ++DKL++ GSEVVALVR ++A DEL A++GV+A++ DA + K VE +DGCDAAITTLG G++ KRVDY GN NVIE+AGILG+TRV+++TS+GCGSS+EA V++VL+ L AK AEN+L+KYYTN WTIIRPGGLKS+ TG AILTED A G I+R DVA LAV+AL+S T RK+L+AVD + S+
Sbjct: 50 AYKKVFVAGGSKGVGRHIVDKLIEDGSEVVALVRSQEAIDELSALEGVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIIRPGGLKSEPGTGEAILTEDAMAIGSIHREDVAALAVKALTSSKTERKVLSAVDQSIPSA 264
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA) HSP 1 Score: 261 bits (667), Expect = 9.940e-84 Identity = 142/246 (57.72%), Postives = 179/246 (72.76%), Query Frame = 1 Query: 49 VTSFVTPC-AWKKVTGTARSTHSGQSTGLRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSS 783
V SF P + T T S S +T AY KVFVAGG+KGVGR ++DKL++ GSEVVALVR ++A DEL AI GV+ ++ DA + K VE +DGCDAAITTLG ++ KRVDY GN NVIE+AGILG+TRV++VTS+GCGSS+EA V++VL+ L AK AEN+L+KYYTN+ WTI+RPGGLKS+ ATG AILTED A G I+R DVA L V+AL+S T RK+L+AVD + S+
Sbjct: 22 VASFAPPAFLGSRRTSTQASGSSSATTTSLDAYKKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQSIPSA 267
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA) HSP 1 Score: 258 bits (659), Expect = 1.250e-82 Identity = 134/213 (62.91%), Postives = 164/213 (77.00%), Query Frame = 1 Query: 130 LRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDP 768
L MAY KVFVAG AKGVGR ++++LV + EVVA VRRE+AK EL +KGV+A++ DAL K VE +DGCDAA+TTLG AP ++ +VDY GN NVIE+AGILG+TR ++VTSVGCG S+EA+S Y+ LE ALKAK AE +L KYYTNS+WT+IRPGGL + AT A+LTE+ A GVINRADVA L V+AL S T RK+LTAVDP
Sbjct: 61 LEMAYKKVFVAGAAKGVGRQIVEQLVAKDVEVVAFVRREEAKQELGGLKGVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYEKLENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Match: B8C036_THAPS (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C036_THAPS) HSP 1 Score: 255 bits (651), Expect = 2.230e-81 Identity = 138/229 (60.26%), Postives = 172/229 (75.11%), Query Frame = 1 Query: 139 AYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKR-VDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALSSPSTVRKILTAVDPEVQSSYDSAEKPA-AFAL 819
+Y KVFVAGG+KGVGR V+DKLV G+EVVALVR ++A DEL A+ GV+A+ DA+D K VE +DGCDAAITTLGG E ++ VDY GN NVIE+AGILG+TRVV+VTS+GCGSS+EA VY+VL+ L K AE +L +YYTN WTI+RPGGL S+ TG A+LTEDT A G I+R DVADL V+ALSS +T +KIL+AVDP ++S+ + K AF L
Sbjct: 47 SYKKVFVAGGSKGVGRLVVDKLVSNGAEVVALVRSDEAVDELSALDGVTAIKGDAMDYKTVEGAMDGCDAAITTLGGGHNVAEGEKYVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEATPPSVYEVLKDVLVQKEKAEKVLTRYYTNMNWTIVRPGGLVSEPPTGKAVLTEDTMAIGSIHRGDVADLVVKALSSKNTEKKILSAVDPSIESASNPEGKTCEAFIL 275 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.505.1 >prot_E-siliculosus-1a_F_contig107.505.1 ID=prot_E-siliculosus-1a_F_contig107.505.1|Name=mRNA_E-siliculosus-1a_F_contig107.505.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=274bp MVSVHSLCLSLVYLGTVTSFVTPCAWKKVTGTARSTHSGQSTGLRMAYGKback to top mRNA from alignment at E-siliculosus-1a_F_contig107:73680..82477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.505.1 ID=mRNA_E-siliculosus-1a_F_contig107.505.1|Name=mRNA_E-siliculosus-1a_F_contig107.505.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:73680..82477+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:73680..82477+ >mRNA_E-siliculosus-1a_F_contig107.505.1 ID=mRNA_E-siliculosus-1a_F_contig107.505.1|Name=mRNA_E-siliculosus-1a_F_contig107.505.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1644bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:73680..82477+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |