prot_E-siliculosus-1a_M_contig90.17138.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig90.17138.1
Unique Name	prot_E-siliculosus-1a_M_contig90.17138.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	482

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 808 bits (2086), Expect = 4.670e-293
Identity = 435/481 (90.44%), Postives = 445/481 (92.52%), Query Frame = 0

Query:    1 MDFVSNTSKRSGQMVQKIRQHLLTQLDTIPTTIPTSTSTAPFVPGGQHDLEQQXXXXXXXXXXXXXXXXXXXXXQRQPLWSPFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVAALTGPAAQETNCLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTTSGTIYSAITNTFGGGIDGSXXXXXXXXXXXGGVIGLLSDLVTVPDPRIARALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPLAPLLLPLLLPPQRRIGIVPAGTEGDDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV 481
            MDF+SNT+KRSGQMV KIRQHLLTQLDTIP  IPTSTS AP VPGGQHDLEQQXXXXXXXXXXXX         QRQPLWSPFPLGLIPEDVRLTVLSFLPA ELSSIRR+SRDFLHTADRHADVLWGRLNRCDFPSVAA T PAAQETNCLSPHQQYVKNVM RA DE GNLRANHRLRESLDSFTWPIDWPRGN  TTSGTIYSAI+NTFGGGIDG   XXXXXXXXX  VIGLLSDLVTVPDPRIARALS+KRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDN TPLAPLLLPLLLPP RRIG VPAGTE  DGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAE VRARVPDRRLFYCALDHPGAQD+PCP GGRS+PHISHWGFHG+LAD G+GGGEGE+PGVRDRAGETVGDALERQER ACFARSSLAFLQYGGGV
Sbjct:    1 MDFISNTAKRSGQMVHKIRQHLLTQLDTIPINIPTSTSAAPSVPGGQHDLEQQXXXXXXXXXXXXLK-------QRQPLWSPFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLHTADRHADVLWGRLNRCDFPSVAAPTDPAAQETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGN-ATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXX--VIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGGRSMPHISHWGFHGLLADSGLGGGEGEMPGVRDRAGETVGDALERQERIACFARSSLAFLQYGGGV 471

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 628 bits (1619), Expect = 1.550e-223
Identity = 351/481 (72.97%), Postives = 358/481 (74.43%), Query Frame = 0

Query:    1 MDFVSNTSKRSGQMVQKIRQHLLTQLDTIPTTIPTSTSTAPFVPGGQHDLEQQXXXXXXXXXXXXXXXXXXXXXQRQPLWSPFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVAALTGPAAQETNCLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTTSGTIYSAITNTFGGGIDGSXXXXXXXXXXXGGVIGLLSDLVTVPDPRIARALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPLAPLLLPLLLPPQRRIGIVPAGTEGDDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV 481
            MDFVSNTSKRSGQMVQKIRQH LTQLDTIP TIPTST  AP VPGGQHDLEQQ XXXXXXXXXXXX        QRQPLWS FPLGLIPEDVRLTVLSFLPA ELSSIRR+SRDFL TADRHADVLWGRLNRC+FPSV+A TGPAAQETNCLSPHQ                                                                                                   RRAALSTVVVDNDKVLFDFRRRG YTGPVNFLPLSTLV+DN TPLAPLLLPLLLPPQRRIGIVPAGTE  DGREEGA+LLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQD+PCP GGRSLPHISHWGFHGVLAD G+GGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV
Sbjct:    1 MDFVSNTSKRSGQMVQKIRQHFLTQLDTIPITIPTSTGAAPSVPGGQHDLEQQQXXXXXXXXXXXX--------QRQPLWSSFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLQTADRHADVLWGRLNRCEFPSVSAPTGPAAQETNCLSPHQ---------------------------------------------------------------------------------------------------RRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCPPGGRSLPHISHWGFHGVLADSGLGGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV 374

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 2.860e-101
Identity = 225/433 (51.96%), Postives = 258/433 (59.58%), Query Frame = 0

Query:   75 QRQPLWS-PFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVA----ALTGPAAQETNCLSPH-QQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTT---TSGT---IYSAITNTFGGGIDGSXXXXXXXXXXXGGVIGLLSDLVTVPDPRIARALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPLAPLLLPLLLPPQRRIGIVPAGTEGDDGR------------EEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEG-----EVPGVRDRAGETVGDALERQERTACFARSSLAFLQYG 478
            +R PL+  PFPL  +PEDV  +VL+FLPA ELS +RR+S+ FL   D H D LW  L RC+FPS+A    A  G    + + LS H QQYV NVM RAND+  NLR+N  LR+ L ++TW    P+ +  T   TSG                    XXXXXXXXXXX  VIGLLSDLVTVPDPRIARALS K R  LS VVV ND V    RR GLYT  V FL LS L  ++     P +LP   P         A      GR            E GA+LLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+DLAVFET+EQAE VRAR+ ++RLFYCALD P  Q  P PA  R LPHISHWGF    A G VGG         V G      E V DA+ERQER AC A SSL  L+ G
Sbjct:  153 ERHPLFDRPFPLDQLPEDVLPSVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQES-----PSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQ--QAPGRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLASSSLEALKCG 578

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: A0A6H5KB01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.070e-47
Identity = 98/163 (60.12%), Postives = 112/163 (68.71%), Query Frame = 0

Query:  325 DDG---REE---GADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGV-LADGGVGGGEG--EVPGVRDRAGETVGDALERQERTACFARSSLAFLQYG 478
            DDG   REE   GA+LLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+DLAVF+T+EQAE VRAR+ ++R FYCALD P  Q  P PA  R LPHISHWGF    +  GG GGG G     G      E V  A+ RQE+ AC ARSSL  L+ G
Sbjct:    4 DDGGGRREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQAEVVRARMANQRRFYCALDRPRGQGHPSPAVLRVLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDAAVARQEKIACLARSSLEALKCG 166

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: A0A6H5KC80_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC80_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-16
Identity = 60/162 (37.04%), Postives = 80/162 (49.38%), Query Frame = 0

Query:   75 QRQPLWS-PFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVA-------------------ALTGPAAQETNCLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTTSGTIYSAITNTFGGGI 216
            +R PL+  PFPL  +PEDV  +VL+FLPA ELS +RR S+ FL   D H + LW  L RCDFPS+A                   A+   A   T  L       +    RAND+  NLR+N  LR+ L ++TW    P+ +  T + T     T +  G I
Sbjct:  153 ERYPLFDRPFPLDRLPEDVLPSVLAFLPAGELSGMRRVSQTFLQEVDHHGEALWDSLCRCDFPSMASSPTAAAGVWGYSRRPVPFAINSSARLRTTPLKSLAAIRQQRHHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQQSSRTINMTSGRGTTASVSGRI 314

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A6H5L1J4_9PHAE	4.670e-293	90.44	F-box domain-containing protein n=1 Tax=Ectocarpus...	[more]
D8LKK0_ECTSI	1.550e-223	72.97	F-box domain-containing protein n=1 Tax=Ectocarpus...	[more]
D8LKJ2_ECTSI	2.860e-101	51.96	F-box domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KB01_9PHAE	2.070e-47	60.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC80_9PHAE	1.120e-16	37.04	F-box domain-containing protein n=1 Tax=Ectocarpus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..76
None	No IPR available	PANTHER	PTHR22904:SF519		coord: 52..124
None	No IPR available	PANTHER	PTHR22904	TPR REPEAT CONTAINING PROTEIN	coord: 52..124
None	No IPR available	SUPERFAMILY	81995	beta-sandwich domain of Sec23/24	coord: 41..85
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 82..130 score: 10.266
IPR036277	SMCs flexible hinge superfamily	SUPERFAMILY	75553	Smc hinge domain	coord: 231..391
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 72..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig90	contig	E-siliculosus-1a_M_contig90:278395..281852 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig90.17138.1	mRNA_E-siliculosus-1a_M_contig90.17138.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig90 278395..282624 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig90.17138.1 ID=prot_E-siliculosus-1a_M_contig90.17138.1|Name=mRNA_E-siliculosus-1a_M_contig90.17138.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=482bp
MDFVSNTSKRSGQMVQKIRQHLLTQLDTIPTTIPTSTSTAPFVPGGQHDL
EQQQQQQQQQQQQQQQQQQQQQLQQRQPLWSPFPLGLIPEDVRLTVLSFL
PAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVAALTGPAAQETN
CLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTT
SGTIYSAITNTFGGGIDGSSSGGGGGGGNSGGVIGLLSDLVTVPDPRIAR
ALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPL
APLLLPLLLPPQRRIGIVPAGTEGDDGREEGADLLPRAPESPAPAGFLGY
AVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYC
ALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEGEVPGVRDRA
GETVGDALERQERTACFARSSLAFLQYGGGV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR036277	SMC_hinge_sf
IPR001810	F-box_dom