mRNA_E-siliculosus-1a_M_contig90.17138.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE) HSP 1 Score: 807 bits (2085), Expect = 1.190e-288 Identity = 435/481 (90.44%), Postives = 445/481 (92.52%), Query Frame = 1
Query: 1 MDFVSNTSKRSGQMVQKIRQHLLTQLDTIPTTIPTSTSTAPFVPGGQHDLEQQXXXXXXXXXXXXXXXXXXXXXQRQPLWSPFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVAALTGPAAQETNCLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTTSGTIYSAITNTFGGGIDGSXXXXXXXXXXXGGVIGLLSDLVTVPDPRIARALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPLAPLLLPLLLPPQRRIGIVPAGTEGDDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV 1443
MDF+SNT+KRSGQMV KIRQHLLTQLDTIP IPTSTS AP VPGGQHDLEQQXXXXXXXXXXXX QRQPLWSPFPLGLIPEDVRLTVLSFLPA ELSSIRR+SRDFLHTADRHADVLWGRLNRCDFPSVAA T PAAQETNCLSPHQQYVKNVM RA DE GNLRANHRLRESLDSFTWPIDWPRGN TTSGTIYSAI+NTFGGGIDG XXXXXXXXX VIGLLSDLVTVPDPRIARALS+KRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDN TPLAPLLLPLLLPP RRIG VPAGTE DGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAE VRARVPDRRLFYCALDHPGAQD+PCP GGRS+PHISHWGFHG+LAD G+GGGEGE+PGVRDRAGETVGDALERQER ACFARSSLAFLQYGGGV
Sbjct: 1 MDFISNTAKRSGQMVHKIRQHLLTQLDTIPINIPTSTSAAPSVPGGQHDLEQQXXXXXXXXXXXXLK-------QRQPLWSPFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLHTADRHADVLWGRLNRCDFPSVAAPTDPAAQETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGN-ATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXX--VIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGGRSMPHISHWGFHGLLADSGLGGGEGEMPGVRDRAGETVGDALERQERIACFARSSLAFLQYGGGV 471
BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI) HSP 1 Score: 627 bits (1618), Expect = 2.430e-219 Identity = 351/481 (72.97%), Postives = 358/481 (74.43%), Query Frame = 1
Query: 1 MDFVSNTSKRSGQMVQKIRQHLLTQLDTIPTTIPTSTSTAPFVPGGQHDLEQQXXXXXXXXXXXXXXXXXXXXXQRQPLWSPFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVAALTGPAAQETNCLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTTSGTIYSAITNTFGGGIDGSXXXXXXXXXXXGGVIGLLSDLVTVPDPRIARALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPLAPLLLPLLLPPQRRIGIVPAGTEGDDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV 1443
MDFVSNTSKRSGQMVQKIRQH LTQLDTIP TIPTST AP VPGGQHDLEQQ XXXXXXXXXXXX QRQPLWS FPLGLIPEDVRLTVLSFLPA ELSSIRR+SRDFL TADRHADVLWGRLNRC+FPSV+A TGPAAQETNCLSPHQ RRAALSTVVVDNDKVLFDFRRRG YTGPVNFLPLSTLV+DN TPLAPLLLPLLLPPQRRIGIVPAGTE DGREEGA+LLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQD+PCP GGRSLPHISHWGFHGVLAD G+GGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV
Sbjct: 1 MDFVSNTSKRSGQMVQKIRQHFLTQLDTIPITIPTSTGAAPSVPGGQHDLEQQQXXXXXXXXXXXX--------QRQPLWSSFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLQTADRHADVLWGRLNRCEFPSVSAPTGPAAQETNCLSPHQ---------------------------------------------------------------------------------------------------RRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCPPGGRSLPHISHWGFHGVLADSGLGGGEGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYGGGV 374
BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI) HSP 1 Score: 323 bits (829), Expect = 5.780e-98 Identity = 225/433 (51.96%), Postives = 258/433 (59.58%), Query Frame = 1
Query: 223 QRQPLWS-PFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVA----ALTGPAAQETNCLSPH-QQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTT---TSGT---IYSAITNTFGGGIDGSXXXXXXXXXXXGGVIGLLSDLVTVPDPRIARALSHKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNSTPLAPLLLPLLLPPQRRIGIVPAGTEGDDGR------------EEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGVLADGGVGGGEG-----EVPGVRDRAGETVGDALERQERTACFARSSLAFLQYG 1434
+R PL+ PFPL +PEDV +VL+FLPA ELS +RR+S+ FL D H D LW L RC+FPS+A A G + + LS H QQYV NVM RAND+ NLR+N LR+ L ++TW P+ + T TSG XXXXXXXXXXX VIGLLSDLVTVPDPRIARALS K R LS VVV ND V RR GLYT V FL LS L ++ P +LP P A GR E GA+LLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+DLAVFET+EQAE VRAR+ ++RLFYCALD P Q P PA R LPHISHWGF A G VGG V G E V DA+ERQER AC A SSL L+ G
Sbjct: 153 ERHPLFDRPFPLDQLPEDVLPSVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQES-----PSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQ--QAPGRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLASSSLEALKCG 578
BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: A0A6H5KB01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.120e-45 Identity = 98/163 (60.12%), Postives = 112/163 (68.71%), Query Frame = 1
Query: 973 DDG---REE---GADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDDPCPAGGRSLPHISHWGFHGV-LADGGVGGGEG--EVPGVRDRAGETVGDALERQERTACFARSSLAFLQYG 1434
DDG REE GA+LLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+DLAVF+T+EQAE VRAR+ ++R FYCALD P Q P PA R LPHISHWGF + GG GGG G G E V A+ RQE+ AC ARSSL L+ G
Sbjct: 4 DDGGGRREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQAEVVRARMANQRRFYCALDRPRGQGHPSPAVLRVLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDAAVARQEKIACLARSSLEALKCG 166
BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Match: A0A6H5KC80_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC80_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.530e-16 Identity = 60/162 (37.04%), Postives = 80/162 (49.38%), Query Frame = 1
Query: 223 QRQPLWS-PFPLGLIPEDVRLTVLSFLPAAELSSIRRSSRDFLHTADRHADVLWGRLNRCDFPSVA-------------------ALTGPAAQETNCLSPHQQYVKNVMCRANDEAGNLRANHRLRESLDSFTWPIDWPRGNDTTTSGTIYSAITNTFGGGI 648
+R PL+ PFPL +PEDV +VL+FLPA ELS +RR S+ FL D H + LW L RCDFPS+A A+ A T L + RAND+ NLR+N LR+ L ++TW P+ + T + T T + G I
Sbjct: 153 ERYPLFDRPFPLDRLPEDVLPSVLAFLPAGELSGMRRVSQTFLQEVDHHGEALWDSLCRCDFPSMASSPTAAAGVWGYSRRPVPFAINSSARLRTTPLKSLAAIRQQRHHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQQSSRTINMTSGRGTTASVSGRI 314 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig90.17138.1 >prot_E-siliculosus-1a_M_contig90.17138.1 ID=prot_E-siliculosus-1a_M_contig90.17138.1|Name=mRNA_E-siliculosus-1a_M_contig90.17138.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=482bp MDFVSNTSKRSGQMVQKIRQHLLTQLDTIPTTIPTSTSTAPFVPGGQHDLback to top mRNA from alignment at E-siliculosus-1a_M_contig90:278395..282624+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig90.17138.1 ID=mRNA_E-siliculosus-1a_M_contig90.17138.1|Name=mRNA_E-siliculosus-1a_M_contig90.17138.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4230bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:278395..282624+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:278395..282624+ >mRNA_E-siliculosus-1a_M_contig90.17138.1 ID=mRNA_E-siliculosus-1a_M_contig90.17138.1|Name=mRNA_E-siliculosus-1a_M_contig90.17138.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2892bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:278395..282624+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |