prot_E-siliculosus-1a_M_contig9.16979.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16979.1
Unique Nameprot_E-siliculosus-1a_M_contig9.16979.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length1021
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI)

HSP 1 Score: 798 bits (2062), Expect = 3.330e-273
Identity = 617/732 (84.29%), Postives = 625/732 (85.38%), Query Frame = 0 
Query:   65 MAAPDQDDSIGAAGVRTPPRRRSLGPEVAAP--GADPVGQGPPGKGSNPAAASSAASEQGRTPTTYSSMREGGQGXXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGEEEREGGCG-VIAAPDVVTYTTLVAALGENGRTSEARQVWREMEEAGVEPNAITYHAMIAAHGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSPRTADWAEALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXXGPRGRRVAVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGKNPEAAAEVVALVRGMDVPDFFAYSAAIAVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAEAAADHPSTNSARTVVPNDGIDAPRLLREMSAAGLRPDEACFTNALSACRDRRQGKQALA 791
            MAA DQDD +GAAGV TPPRRRS+GPEVAAP  GADPVGQ  P  GS  AAASSAASEQGRTPTTYSSMREGGQ XXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAF+RSRDFVVKIRGMSRWNWRGVMRELEEAET EAKFGEAEKGTTGGSDGRVSSHAYNSCL+HLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AGR GAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGE E    CG VIA                             MEEAGVEPNAITYHAMIAAHGNAA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PSPRTADWAEALALFDQMPRKGI+HTPTSYSTAITVAGQCGLWEEAVALLDRIRRDR            XXXXX    RR AVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDS+VGVYGK PEAAAE+VALVR MDVPDFFAYSAAIAVC XXXXXXXXXXXXXXXXXXXX                      A EAAADHPSTNSAR VVPNDGIDAPRLLREMSA+GLRPDEACFTNALSACRDRRQGKQALA
Sbjct:    1 MAASDQDDGMGAAGVHTPPRRRSVGPEVAAPASGADPVGQWAPSTGSKHAAASSAASEQGRTPTTYSSMREGGQXXXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAFARSRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAAGRAGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGEGE----CGCVIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEEAGVEPNAITYHAMIAAHGNAAAAKVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP---PSPRTADWAEALALFDQMPRKGIQHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRRDDDAERGTPGGXXXXXXXXXRRGAVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSVVGVYGKTPEAAAELVALVRAMDVPDFFAYSAAIAVCXXXXXXXXXXXXXXXXXXXXXAQPLKENNATSVDSNEAPSSLSAGEAAADHPSTNSARPVVPNDGIDAPRLLREMSASGLRPDEACFTNALSACRDRRQGKQALA 725
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: A0A6H5K890_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K890_9PHAE)

HSP 1 Score: 673 bits (1737), Expect = 3.250e-224
Identity = 773/944 (81.89%), Postives = 783/944 (82.94%), Query Frame = 0 
Query:  131 MREGGQGXXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGE-----------------------------------------------AEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGEEEREGGCGVIAAPDVVTYTTLVAALGENGRTSEARQVWREMEEAGVEPNAITYHAMIAAHGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP-------SPRTADWAEALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXX-GPRGRRVAVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGKNPEAAAEVVALVRGMDVPDFFAYSAAIAVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAAADHPSTNSARTVVPNDGIDAPRLLREMSAAGLRPDEACFTNALSACRDRRQGKQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSALRNDGDNXXXXXXXXXXXXXXXXXXXXXXXXXACRRVNKEEQVDALAEELTSLVGRERASTLLLP 1019
            MREGGQG  XXXX  VRRRRPGEGRGRGARRGT KGRAAF+RSRDFV+KIRGMSRWNWRGVMRELEEAETVEAKFGE                                               AEKG TGGSDGRVSSHAYNSCL+HLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGR GAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQA GEE                                       MEEAGVEPNAITYHAMIAA+GNAA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SPRTADW EALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXX GP G+RVA NNYVYAATITACGNNGQWEQALRLLREMSEAGVEADAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGK PEAAAE+VALVRGMDVPDFFAYSAAIAVCA                                        +A AAADHPSTNSAR +VPNDGIDAPRLL+EMSAAGLRPDEACFTNALSACRDRRQGKQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSALRND DN  XXXXXXXXXXXXXXXXXXXXX  ACRRVNKEEQVDALAEEL SLVGR+RASTLLLP
Sbjct:    1 MREGGQGGRXXXXXXVRRRRPGEGRGRGARRGTNKGRAAFARSRDFVMKIRGMSRWNWRGVMRELEEAETVEAKFGEGPRSRPSGAFFVFGSSETDVFSLVSGLARAMLVQTHTRTHTCDMTLQAEKGMTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRAGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQAPGEEREXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXMEEAGVEPNAITYHAMIAAYGNAAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRTADWVEALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXXVGPSGQRVAANNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGKTPEAAAELVALVRGMDVPDFFAYSAAIAVCAAVAGVVPATPSAAATAQALKDSNATSVDSNEAPSSL----SATAAADHPSTNSARAIVPNDGIDAPRLLQEMSAAGLRPDEACFTNALSACRDRRQGKQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSALRNDCDNSAXXXXXXXXXXXXXXXXXXXXXVRACRRVNKEEQVDALAEELASLVGRDRASTLLLP 938
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.420e-9
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 0 
Query:  173 SRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNA 262
            S++FV K++ M   +WRGV+REL+ AE         E      S+ R+++  Y SC+  +AK  RW EAL + +RM ARG+ PNS+C+++
Sbjct:   42 SKNFVQKVQCMRPTDWRGVLRELQIAE---------EASDAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSS 122
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-8
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 0 
Query:  166 GRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAA 270
            GRA+F R++  + KI  + + +WR ++ EL++AE  E   G A           VS+  Y+ C+  +AKC RW EAL +  RM   G  PNS+C+NA L+AC  A
Sbjct:   72 GRASF-RTKLALDKIDAVRKDDWRRILVELDKAELAE---GRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKA 172
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1L0_ECTSI3.330e-27384.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K890_9PHAE3.250e-22481.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6J5_9PHAE8.420e-940.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G0M5_ECTSI1.170e-839.05PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 700..851
e-value: 8.1E-24
score: 85.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 331..486
e-value: 5.2E-23
score: 84.1
coord: 487..670
e-value: 1.7E-31
score: 111.9
coord: 192..328
e-value: 7.8E-22
score: 80.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 852..1017
e-value: 4.7E-34
score: 120.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 341..366
e-value: 0.13
score: 12.5
coord: 519..546
e-value: 0.04
score: 14.2
coord: 917..941
e-value: 0.049
score: 13.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 574..621
e-value: 7.4E-8
score: 32.5
coord: 388..434
e-value: 7.8E-13
score: 48.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 612..641
e-value: 0.0029
score: 15.7
coord: 577..609
e-value: 1.4E-5
score: 22.9
coord: 806..839
e-value: 5.3E-7
score: 27.4
coord: 912..945
e-value: 9.9E-5
score: 20.3
coord: 293..322
e-value: 0.0023
score: 16.0
coord: 843..875
e-value: 2.2E-5
score: 22.3
coord: 391..425
e-value: 5.6E-10
score: 36.8
coord: 224..256
e-value: 5.9E-6
score: 24.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 756..817
e-value: 1.3E-6
score: 28.4
coord: 244..303
e-value: 0.0043
score: 17.1
coord: 826..885
e-value: 6.5E-12
score: 45.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 769..803
score: 8.451
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 609..643
score: 10.424
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 389..423
score: 13.581
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 221..255
score: 10.819
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 338..372
score: 7.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..546
score: 7.465
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 574..608
score: 11.038
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 874..908
score: 10.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 804..838
score: 11.893
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 256..290
score: 7.629
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 291..325
score: 8.21
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 909..943
score: 9.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 839..873
score: 11.52
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 499..685
coord: 224..367
coord: 387..438
coord: 754..1003

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:629647..639635 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16979.1mRNA_E-siliculosus-1a_M_contig9.16979.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 629605..640180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.16979.1 ID=prot_E-siliculosus-1a_M_contig9.16979.1|Name=mRNA_E-siliculosus-1a_M_contig9.16979.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1021bp
MAFIAPSVGPGAAGAEAWRTAGHPRWVPIWWSPQQQRKQERLSCTPAHEQ
RATYAARPSAKSSTMAAPDQDDSIGAAGVRTPPRRRSLGPEVAAPGADPV
GQGPPGKGSNPAAASSAASEQGRTPTTYSSMREGGQGGRGGGGRGVRRRR
PGEGRGRGARRGTKKGRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAET
VEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWA
RGVTPNSFCLNATLEACTAAGEWKRCLALLERAKGAGLEVNEISYNICIA
ACGSGKQWQKALGLLRELEAAGRTGAVVPGGRVPLRPTVGTYGATMRALG
MSGKWRESMEVFRELQGLAGQASGEEEREGGCGVIAAPDVVTYTTLVAAL
GENGRTSEARQVWREMEEAGVEPNAITYHAMIAAHGNAAAAKAAAAAATS
AAADNNTSAASASASSTAAASASASASAAGKQRPPAAAAAPSPRTADWAE
ALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRRDD
DDERGAPGGAGAAGGPRGRRVAVNNYVYAATITACGNNGQWEQALRLLRE
MSEAGVEADALTYSAAISVLAREARLPEAFRLIREMSERGLATVSGSAYD
SIVGVYGKNPEAAAEVVALVRGMDVPDFFAYSAAIAVCAAVAGVVPATPA
AAAALATAQPLKESNATSVDSSEALSSLSAAEAAADHPSTNSARTVVPND
GIDAPRLLREMSAAGLRPDEACFTNALSACRDRRQGKQALAILRDMEAAG
VTPDGVVYTLVMAACGGAGRWQDAVSLVREMTEKGVRPNLINYSVAISAC
AKAGRHEPALELMAEMKDAGINPNTVTYSSAILACSASGQCGDAVGLLRD
MSKRGMAPSRTCYAPAITACARGNEPDMALSLLREMPTEGLVPDAMCYAA
ALSALRNDGDNSVAVLREMRDGGLAPAPGLYVEAIRACRRVNKEEQVDAL
AEELTSLVGRERASTLLLPD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf