mRNA_E-siliculosus-1a_M_contig9.16979.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI) HSP 1 Score: 798 bits (2062), Expect = 1.790e-270 Identity = 617/732 (84.29%), Postives = 625/732 (85.38%), Query Frame = 1
Query: 235 MAAPDQDDSIGAAGVRTPPRRRSLGPEVAAP--GADPVGQGPPGKGSNPAAASSAASEQGRTPTTYSSMREGGQGXXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGEEEREGGCG-VIAAPDVVTYTTLVAALGENGRTSEARQVWREMEEAGVEPNAITYHAMIAAHGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSPRTADWAEALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXXGPRGRRVAVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGKNPEAAAEVVALVRGMDVPDFFAYSAAIAVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAEAAADHPSTNSARTVVPNDGIDAPRLLREMSAAGLRPDEACFTNALSACRDRRQGKQALA 2415
MAA DQDD +GAAGV TPPRRRS+GPEVAAP GADPVGQ P GS AAASSAASEQGRTPTTYSSMREGGQ XXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAF+RSRDFVVKIRGMSRWNWRGVMRELEEAET EAKFGEAEKGTTGGSDGRVSSHAYNSCL+HLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGR GAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGE E CG VIA MEEAGVEPNAITYHAMIAAHGNAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSPRTADWAEALALFDQMPRKGI+HTPTSYSTAITVAGQCGLWEEAVALLDRIRRDR XXXXX RR AVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDS+VGVYGK PEAAAE+VALVR MDVPDFFAYSAAIAVC XXXXXXXXXXXXXXXXXXXX A EAAADHPSTNSAR VVPNDGIDAPRLLREMSA+GLRPDEACFTNALSACRDRRQGKQALA
Sbjct: 1 MAASDQDDGMGAAGVHTPPRRRSVGPEVAAPASGADPVGQWAPSTGSKHAAASSAASEQGRTPTTYSSMREGGQXXXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAFARSRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAAGRAGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGEGE----CGCVIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEEAGVEPNAITYHAMIAAHGNAAAAKVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP---PSPRTADWAEALALFDQMPRKGIQHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRRDDDAERGTPGGXXXXXXXXXRRGAVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSVVGVYGKTPEAAAELVALVRAMDVPDFFAYSAAIAVCXXXXXXXXXXXXXXXXXXXXXAQPLKENNATSVDSNEAPSSLSAGEAAADHPSTNSARPVVPNDGIDAPRLLREMSASGLRPDEACFTNALSACRDRRQGKQALA 725
BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: A0A6H5K890_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K890_9PHAE) HSP 1 Score: 676 bits (1745), Expect = 7.190e-223 Identity = 775/948 (81.75%), Postives = 785/948 (82.81%), Query Frame = 1
Query: 433 MREGGQGXXXXXXRGVRRRRPGEGRGRGARRGTKKGRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGE-----------------------------------------------AEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRTGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQASGEEEREGGCGVIAAPDVVTYTTLVAALGENGRTSEARQVWREMEEAGVEPNAITYHAMIAAHGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP-------SPRTADWAEALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXX-GPRGRRVAVNNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGKNPEAAAEVVALVRGMDVPDFFAYSAAIAVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAAADHPSTNSARTVVPNDGIDAPRLLREMSAAGLRPDEACFTNALSACRDRRQGKQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSALRNDGDNXXXXXXXXXXXXXXXXXXXXXXXXXACRRVNKEEQVDALAEELTSLVGRERASTLLLPD*YV 3111
MREGGQG XXXX VRRRRPGEGRGRGARRGT KGRAAF+RSRDFV+KIRGMSRWNWRGVMRELEEAETVEAKFGE AEKG TGGSDGRVSSHAYNSCL+HLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGR GAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQA GEE MEEAGVEPNAITYHAMIAA+GNAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPRTADW EALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXX GP G+RVA NNYVYAATITACGNNGQWEQALRLLREMSEAGVEADAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGK PEAAAE+VALVRGMDVPDFFAYSAAIAVCA +A AAADHPSTNSAR +VPNDGIDAPRLL+EMSAAGLRPDEACFTNALSACRDRRQGKQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSALRND DN XXXXXXXXXXXXXXXXXXXXX ACRRVNKEEQVDALAEEL SLVGR+RASTLLLP YV
Sbjct: 1 MREGGQGGRXXXXXXVRRRRPGEGRGRGARRGTNKGRAAFARSRDFVMKIRGMSRWNWRGVMRELEEAETVEAKFGEGPRSRPSGAFFVFGSSETDVFSLVSGLARAMLVQTHTRTHTCDMTLQAEKGMTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRAGAVVPGGRVPLRPTVGTYGATMRALGMSGKWRESMEVFRELQGLAGQAPGEEREXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXMEEAGVEPNAITYHAMIAAYGNAAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRTADWVEALALFDQMPRKGIRHTPTSYSTAITVAGQCGLWEEAVALLDRIRRDRXXXXXXXXXXXXXXXXXVGPSGQRVAANNYVYAATITACGNNGQWEQALRLLREMSEAGVEADALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATVSGSAYDSIVGVYGKTPEAAAELVALVRGMDVPDFFAYSAAIAVCAAVAGVVPATPSAAATAQALKDSNATSVDSNEAPSSL----SATAAADHPSTNSARAIVPNDGIDAPRLLQEMSAAGLRPDEACFTNALSACRDRRQGKQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSALRNDCDNSAXXXXXXXXXXXXXXXXXXXXXVRACRRVNKEEQVDALAEELASLVGRDRASTLLLPGVYV 942
BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.070e-8 Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 559 SRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNA 828
S++FV K++ M +WRGV+REL+ AE E S+ R+++ Y SC+ +AK RW EAL + +RM ARG+ PNS+C+++
Sbjct: 42 SKNFVQKVQCMRPTDWRGVLRELQIAE---------EASDAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSS 122
BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.480e-8 Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 538 GRAAFSRSRDFVVKIRGMSRWNWRGVMRELEEAETVEAKFGEAEKGTTGGSDGRVSSHAYNSCLVHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEACTAA 852
GRA+F R++ + KI + + +WR ++ EL++AE E G A VS+ Y+ C+ +AKC RW EAL + RM G PNS+C+NA L+AC A
Sbjct: 72 GRASF-RTKLALDKIDAVRKDDWRRILVELDKAELAE---GRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKA 172 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.16979.1 >prot_E-siliculosus-1a_M_contig9.16979.1 ID=prot_E-siliculosus-1a_M_contig9.16979.1|Name=mRNA_E-siliculosus-1a_M_contig9.16979.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1021bp MAFIAPSVGPGAAGAEAWRTAGHPRWVPIWWSPQQQRKQERLSCTPAHEQback to top mRNA from alignment at E-siliculosus-1a_M_contig9:629605..640180+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.16979.1 ID=mRNA_E-siliculosus-1a_M_contig9.16979.1|Name=mRNA_E-siliculosus-1a_M_contig9.16979.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10576bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:629605..640180+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:629605..640180+ >mRNA_E-siliculosus-1a_M_contig9.16979.1 ID=mRNA_E-siliculosus-1a_M_contig9.16979.1|Name=mRNA_E-siliculosus-1a_M_contig9.16979.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6126bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:629605..640180+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |