prot_E-siliculosus-1a_M_contig9.16938.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16938.1
Unique Nameprot_E-siliculosus-1a_M_contig9.16938.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length73
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.070e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD
Sbjct:   72 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.760e-36
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EILDR+RE+EKL+
Sbjct:   72 VDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.890e-32
Identity = 57/70 (81.43%), Postives = 67/70 (95.71%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEK 70
            +DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EIL+RI+EVEK
Sbjct:   75 IDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEK 144          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.040e-30
Identity = 55/72 (76.39%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREILDR++ +EK++
Sbjct:   82 VDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A482SEH0_9ARCH (Clat_adaptor_s domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH0_9ARCH)

HSP 1 Score: 110 bits (275), Expect = 3.540e-30
Identity = 52/71 (73.24%), Postives = 66/71 (92.96%), Query Frame = 0
Query:    2 DVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            DV DNELL +ET+H+FVELL+ YFSNVCELDIVF+FNKVY +LDEFIL+GE++E+SKR IL+R+RE+EKL+
Sbjct:   16 DVTDNELLLMETIHIFVELLDVYFSNVCELDIVFHFNKVYTLLDEFILAGEIQETSKRVILERVRELEKLE 86          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A1Z5K077_FISSO (AP complex subunit sigma n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K077_FISSO)

HSP 1 Score: 112 bits (280), Expect = 3.990e-30
Identity = 53/72 (73.61%), Postives = 69/72 (95.83%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +DVNDNEL  LET+HLFVELL+SYF+NVCELDIVF+FNKVY+ILDEF+L+GE+EE+SKREILDR++ ++K++
Sbjct:   80 VDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNKVYSILDEFMLAGEIEETSKREILDRVKLLDKME 151          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.220e-30
Identity = 54/72 (75.00%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+EE+SKREILDR++ +EK++
Sbjct:   82 VDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIEETSKREILDRVKFMEKME 153          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A1E7FNV2_9STRA (AP complex subunit sigma n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FNV2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.570e-30
Identity = 54/72 (75.00%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +DV DNEL  LET+HLFVELL++YFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREILDR++ +EK++
Sbjct:   92 VDVQDNELSYLETIHLFVELLDAYFSNVCELDIVFNFNKVYSILDEFMLAGEMEETSKREILDRVKFMEKME 163          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 111 bits (278), Expect = 6.220e-30
Identity = 53/72 (73.61%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +DV DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNKVY+ILDE++L+GE+EE+SK+EILDR++ +EKLD
Sbjct:   71 VDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.800e-30
Identity = 53/72 (73.61%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 72
            +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EILDR++ +EKL+
Sbjct:   79 VDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI2.070e-40100.00AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA3.760e-3688.89AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA3.890e-3281.43AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A7S3L6S1_9STRA1.040e-3076.39AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A482SEH0_9ARCH3.540e-3073.24Clat_adaptor_s domain-containing protein n=1 Tax=a... [more]
A0A1Z5K077_FISSO3.990e-3073.61AP complex subunit sigma n=1 Tax=Fistulifera solar... [more]
A0A7S4IKL5_9STRA4.220e-3075.00AP complex subunit sigma n=5 Tax=Bacillariophyta T... [more]
A0A1E7FNV2_9STRA5.570e-3075.00AP complex subunit sigma n=2 Tax=Bacillariaceae Ta... [more]
B8C940_THAPS6.220e-3073.61AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]
A0A7S0FJC4_9STRA7.800e-3073.61AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..71
e-value: 4.8E-24
score: 84.9
NoneNo IPR availableGENE3D3.30.450.60coord: 1..72
e-value: 3.3E-25
score: 90.5
NoneNo IPR availablePANTHERPTHR11753:SF44AP-2 COMPLEX SUBUNIT SIGMAcoord: 2..72
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..72
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 2..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:199991..200820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16938.1mRNA_E-siliculosus-1a_M_contig9.16938.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 199226..201569 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.16938.1 ID=prot_E-siliculosus-1a_M_contig9.16938.1|Name=mRNA_E-siliculosus-1a_M_contig9.16938.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=73bp
MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILS
GEVEESSKREILDRIREVEKLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su