mRNA_E-siliculosus-1a_M_contig9.16938.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16938.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16938.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.250e-51
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 3 
Query:  657 LSRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            ++R   +   + YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD
Sbjct:   41 VTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.010e-44
Identity = 81/103 (78.64%), Postives = 93/103 (90.29%), Query Frame = 3 
Query:  657 LSRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            +SR   +   + Y +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EILDR+RE+EKL+
Sbjct:   41 VSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.720e-39
Identity = 72/103 (69.90%), Postives = 88/103 (85.44%), Query Frame = 3 
Query:  657 LSRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            + R   +   + +  YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EIL+RI+EVEK +
Sbjct:   44 VGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEKRE 146
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.030e-38
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            +R   +   + Y +YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREILDR++ +EK++
Sbjct:   52 ARDKKYTNFIEYNSYKLIYRRYAGLFFTIAVDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.990e-38
Identity = 71/102 (69.61%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            SR   +   + Y  YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+EE+SKREILDR++ +EK++
Sbjct:   52 SRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIEETSKREILDRVKFMEKME 153
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.520e-38
Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            SR   +   + Y +YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EILDR++ +EKL+
Sbjct:   49 SRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 147 bits (371), Expect = 2.730e-38
Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            SR   +   + Y  YKLIYRRYAGLFFT  +DV DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNKVY+ILDE++L+GE+EE+SK+EILDR++ +EKLD
Sbjct:   41 SRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A6T8NVY6_9STRA (AP complex subunit sigma n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NVY6_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.200e-38
Identity = 70/102 (68.63%), Postives = 86/102 (84.31%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            SR   +   + Y  YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDEF+L+GE+EE+SKREIL+R++ +EK+D
Sbjct:   55 SRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDMTDNELNYLETIHLFVELLDSYFSNVCELDIVFNFNRVYAILDEFMLAGEIEETSKREILERVKVIEKMD 156
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A1Z5K077_FISSO (AP complex subunit sigma n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K077_FISSO)

HSP 1 Score: 147 bits (370), Expect = 5.000e-38
Identity = 69/102 (67.65%), Postives = 88/102 (86.27%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            +R   +   + Y  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYF+NVCELDIVF+FNKVY+ILDEF+L+GE+EE+SKREILDR++ ++K++
Sbjct:   50 ARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNKVYSILDEFMLAGEIEETSKREILDRVKLLDKME 151
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Match: A0A1E7FNV2_9STRA (AP complex subunit sigma n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FNV2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 7.210e-38
Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:  660 SRSMPFHRCL*YGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 965
            +R   +   + Y  YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL++YFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREILDR++ +EK++
Sbjct:   62 ARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLETIHLFVELLDAYFSNVCELDIVFNFNKVYSILDEFMLAGEMEETSKREILDRVKFMEKME 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI4.250e-5189.32AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA1.010e-4478.64AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA1.720e-3969.90AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A7S3L6S1_9STRA1.030e-3869.61AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A7S4IKL5_9STRA1.990e-3869.61AP complex subunit sigma n=5 Tax=Bacillariophyta T... [more]
A0A7S0FJC4_9STRA2.520e-3868.63AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
B8C940_THAPS2.730e-3868.63AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]
A0A6T8NVY6_9STRA4.200e-3868.63AP complex subunit sigma n=1 Tax=Proboscia inermis... [more]
A0A1Z5K077_FISSO5.000e-3867.65AP complex subunit sigma n=1 Tax=Fistulifera solar... [more]
A0A1E7FNV2_9STRA7.210e-3868.63AP complex subunit sigma n=2 Tax=Bacillariaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:199226..201569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size219
Model size1733
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03036,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EC2.7.11.1
EggNOG OGsCOG5030@1,KOG0935@2759
EggNOG free text desc.protein transporter activity
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005886,GO:0005905,GO:0005933,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0010171,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030276,GO:0030427,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0042763,GO:0042764,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045334,GO:0046907,GO:0048475,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072583,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0099568
KEGG Pathwayko04114,ko04144,ko04721,ko04914,ko04961,ko05016,map04114,map04144,map04721,map04914,map04961,map05016
KEGG koko:K11481,ko:K11827
Preferred nameap2s1
Seed eggNOG ortholog2880.D8LQX3
Seed ortholog evalue1.5e-30
Seed ortholog score138.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16938.1prot_E-siliculosus-1a_M_contig9.16938.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 199991..200820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936375.8727493-UTR-E-siliculosus-1a_M_contig9:199225..1999901622936375.8727493-UTR-E-siliculosus-1a_M_contig9:199225..199990Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 199226..199990 -
1696251049.4297855-UTR-E-siliculosus-1a_M_contig9:199225..1999901696251049.4297855-UTR-E-siliculosus-1a_M_contig9:199225..199990Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 199226..199990 -
1622936375.918696-UTR-E-siliculosus-1a_M_contig9:200820..2015691622936375.918696-UTR-E-siliculosus-1a_M_contig9:200820..201569Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 200821..201569 -
1696251049.468908-UTR-E-siliculosus-1a_M_contig9:200820..2015691696251049.468908-UTR-E-siliculosus-1a_M_contig9:200820..201569Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 200821..201569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936375.8908887-CDS-E-siliculosus-1a_M_contig9:199990..2000921622936375.8908887-CDS-E-siliculosus-1a_M_contig9:199990..200092Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 199991..200092 -
1696251049.4496887-CDS-E-siliculosus-1a_M_contig9:199990..2000921696251049.4496887-CDS-E-siliculosus-1a_M_contig9:199990..200092Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 199991..200092 -
1622936375.9052982-CDS-E-siliculosus-1a_M_contig9:200703..2008201622936375.9052982-CDS-E-siliculosus-1a_M_contig9:200703..200820Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 200704..200820 -
1696251049.460253-CDS-E-siliculosus-1a_M_contig9:200703..2008201696251049.460253-CDS-E-siliculosus-1a_M_contig9:200703..200820Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 200704..200820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16938.1

>prot_E-siliculosus-1a_M_contig9.16938.1 ID=prot_E-siliculosus-1a_M_contig9.16938.1|Name=mRNA_E-siliculosus-1a_M_contig9.16938.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=73bp
MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILS
GEVEESSKREILDRIREVEKLD*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig9:199226..201569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16938.1 ID=mRNA_E-siliculosus-1a_M_contig9.16938.1|Name=mRNA_E-siliculosus-1a_M_contig9.16938.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2344bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:199226..201569- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCCCCCCTACCGTAGAGATGGCCCCGGGGATATCGTTGTGGACAAAAAA
GATAGATGTCCCCCCGGGGACAATTCAGAGGATATTACGGTAGGCAGGGG
AACACGAACACACACACGCGCGCGAAGTGTGGTCTTGAACGCATGGAGAG
TAGTGCAGGCGCTGAGAGGGAGAGAAGACGAGGGACGGCCGGTTGCATTT
GGACGCGACGGGGGCGAGGGACGCGATGGGTGACAAAAGCAGCCGAGTTG
TGGACACTCCTCTTTCTATCTGGATAGGCGCTTTTCTTTTTCGCGGACCT
TTTTTGGCGCAGGGAACAACAGCTAAGAGTTCTGGGTGGTTGGTGTGGCC
TCCTCTTCCCCCATCACCCCCTTTCCTCTGCCCCGTTCGGCGTCGTGTCT
TCCTCGAGACTCGCTGTTGCACGCGAACTGTCTGACTGCGATTTTGCGTG
CCTTGCGCATGTGATCAGAGACCCCCAAAAATCGCCGTCTTCCCGTCTTT
TTGGAGTCACACAGGGTTAGGGGTAAAAAAAAATTCACGTGATGACCGCC
AGAGCAACACCTATAACGACAACGGGCATCATAGATATCAGCAGTAGACA
TGAGTACCTTTCTGTGTGTCTTGGCTGGTCGTCGCGAATTGGGCAATCTG
GGCTGATTGTCCCGCTCTATGCCTTTCCACCGCTGTTTGTAGTACGGGAC
CTACAAGCTCATCTACCGGCGATATGCGGGCCTGTTCTTCACGTTCGGCA
TGGACGTGAACGACAACGAGCTCCTGGCGCTCGAGACGGTGCACCTGTTT
GTCGAGCTGCTCGAGTCGTACTTCTCCAATGTATGCGAGCTCGACATCGT
CTTCAACTTTAACAAGGTGCGCTGCAGCAGTAGCTGTGGCCTGTTTTGCC
GGGGGGGGATGGTGTGGTCCTTGACATCGTCTTCAACTTTTAACAAGGTG
CGCTAAAACAGTAGCTGTTGCCTGTTTGGCAAGACGGCGGGGGGCTGGAG
TCGTGCACACCTTCGCCATTGGAAAGACGACGGAGCTTTTCTGTCGAACG
GAGGGCACTGTTCCTGTTCCTGCGGATGACTCCTTTGCTCTCCGAACTTT
TACAAGGCGCTGCGCCCTCTGCCGTGCTTGCTAGCCCAACGGGGAACGAA
GGCGGCGAGAAGACGGTAGGCGGGAGCTAAGCGGGGTGGGAGGGGTACCG
CACTCCTGAGGGGAGCGTGATATGATATCAAGGAACGCCCCGCCTGCGGG
TGTCATGCATGTGTGTATGTGATCGAATGTGTTTTGTTTGCGTTCTGCGT
TACACCAGCCTGCTCTAGCTGTTCAGCCTCCTTCCTTCACGTGTGGCTGT
CCGTCGGAAGCGGTGACCAACTGGGTCGAGATTCAACTTGCGTGCGGAGA
GACCCCACGCGAATAGTTCCTGAACCTCCAAACGTCTGGTGGGCATGCCG
CCGCCGCCGCCGCTGCCGACTCTGCAGGTGTACAACATTCTGGACGAGTT
CATACTGAGCGGGGAGGTGGAGGAGAGCAGCAAGCGAGAGATCCTGGACC
GAATTAGAGAGGTCGAAAAGCTGGACTAGCAGCAGCCGAAGATCGATCCC
CGGGGCAGCTCTGCGCGGCAGTGTCGTGCCCTTGCGGCGTACATTGAGCG
CGCCGTACACGCCAAGACGTCAATGTCGTTTTTAATGGAAATAGTCAGTG
CGCATGTACTTAAGATGTAGAGGTGTTTGTTTGGAGGTCCAGAGAAAGCA
AGAACAGGGCGAAGCCATTTTTTCATTTTTTCCCGTAGGACAGGATCCCC
TGTGCCGGACGTCTTTGGTGTTTTTTCTTGAATAGCAGTACTGGTAGCGG
TGTGTGTGCGTGTGTGGAGGTGAAGGCGTCAATTTTGAGAGAGCCTCGGC
CGCGCAAACCGGCTGGCCAATGGAAATACTTCATTTTTTTCGGGACAAGC
ACTCAAAGCACGCGCGTGCGTGTAACCGTAGTGGCTGGATATGTTGACCC
AGTCGGTCTTGAGGCAACATAAAAAAAAAGAACAGCAGAAGGCCGCACGG
GCGCGACGAACAAAGAAGCCTGTCTCTGCAAAGGCTTGCTTCTAGCCTTT
CTCTCGCGGCAGTTTTCTGATTGGTCAACTTTTTTGAAAAGGAATATCCT
GATTGGTTGAGAGTCCCTGGTCGACCGGTGACGTCATCCACCGTCGTGAA
GTCGTTGAGTCGCCTTTCGTTGATGACTGATTGAACCCGTTGCCGACAAG
CAGGCCGGGACACGCAATCCAGAGGACACCACACGCACACCGCGCGTGCG
CCACCGGACGCTGTTTCCCAATCGACCCTTTCCGGAATAGACTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:199226..201569-

>mRNA_E-siliculosus-1a_M_contig9.16938.1 ID=mRNA_E-siliculosus-1a_M_contig9.16938.1|Name=mRNA_E-siliculosus-1a_M_contig9.16938.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:199226..201569- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGACGTGAACGACAACGAGCTCCTGGCGCTCGAGACGGTGCACCTGTT
TGTCGAGCTGCTCGAGTCGTACTTCTCCAATGTATGCGAGCTCGACATCG
TCTTCAACTTTAACAAGATGGACGTGAACGACAACGAGCTCCTGGCGCTC
GAGACGGTGCACCTGTTTGTCGAGCTGCTCGAGTCGTACTTCTCCAATGT
ATGCGAGCTCGACATCGTCTTCAACTTTAACAAGGTGTACAACATTCTGG
ACGAGTTCATACTGAGCGGGGAGGTGGAGGAGAGCAGCAAGCGAGAGATC
CTGGACCGAATTAGAGAGGTCGAAAAGCTGGACTAGGTGTACAACATTCT
GGACGAGTTCATACTGAGCGGGGAGGTGGAGGAGAGCAGCAAGCGAGAGA
TCCTGGACCGAATTAGAGAGGTCGAAAAGCTGGACTAG
back to top