prot_E-siliculosus-1a_M_contig86.16679.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16679.1
Unique Nameprot_E-siliculosus-1a_M_contig86.16679.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length325
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16679.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 1.500e-162
Identity = 292/328 (89.02%), Postives = 297/328 (90.55%), Query Frame = 0 
Query:    1 MTDQGALESQLAGLRAQREQLVALVGDDPHSPLVPLQEELAVAIGGIHERLSLLREQAGENNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPVVVGALCVAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRYWKEGRSCKFSGPDCPFSHGVEVPLSGLLPDDGGGGSSWLASLRSGSRVLACYHDRVWYEATAEGPATPA---AGAAASSMLLAVRFKGFEDDGPVSVPADSSHLAPLEAAATAPEIDGVGGGNGXXXXXXXXXXXXXXXXSDLEDAWAADAAAAGRGSERDGNMTAGAFFQERVLGDRR 325
            MTDQGALE QLA LRAQREQLVALVGDD HSPL+PLQEELAVAI GI ERLSLLREQAGEN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EPSFP+VVGALC+APRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCR+WKEGRSCKFSGPDCPFSHGVEVPL GLLPDDGGGGSSWLASLRSGSRVLA YHDRVWYEATAEGPA PA   AGAAASSMLLAVRFKGFE DGPVSVPADSSHLAPLEAA TAPEI GVGGGNG         XXXXX  SDLEDAWAADA AAGRG ERDG+MTAGAFFQERVLGDRR
Sbjct:    1 MTDQGALERQLADLRAQREQLVALVGDDSHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGGSSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPLEAAVTAPEIHGVGGGNGGASDDAEHEXXXXXE-SDLEDAWAADAVAAGRGGERDGSMTAGAFFQERVLGDRR 324
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE1.500e-16289.02Zinc finger CCCH-type with G patch domain-containi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.1190coord: 104..179
e-value: 9.7E-7
score: 30.8
NoneNo IPR availablePANTHERPTHR46297FAMILY NOT NAMEDcoord: 32..287
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 146..170
score: 12.643

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:537624..541469 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16679.1mRNA_E-siliculosus-1a_M_contig86.16679.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig86 537624..541823 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig86.16679.1 ID=prot_E-siliculosus-1a_M_contig86.16679.1|Name=mRNA_E-siliculosus-1a_M_contig86.16679.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=325bp
MTDQGALESQLAGLRAQREQLVALVGDDPHSPLVPLQEELAVAIGGIHER
LSLLREQAGENNEREEEGGQQATTGASTPPPPSPTQEQEQEQQQQEPSFP
VVVGALCVAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRYW
KEGRSCKFSGPDCPFSHGVEVPLSGLLPDDGGGGSSWLASLRSGSRVLAC
YHDRVWYEATAEGPATPAAGAAASSMLLAVRFKGFEDDGPVSVPADSSHL
APLEAAATAPEIDGVGGGNGESSDGGEHEKEEEEEESDLEDAWAADAAAA
GRGSERDGNMTAGAFFQERVLGDRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH