mRNA_E-siliculosus-1a_M_contig86.16679.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16679.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16679.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16679.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 478 bits (1229), Expect = 4.630e-161
Identity = 292/328 (89.02%), Postives = 297/328 (90.55%), Query Frame = 1 
Query:  355 MTDQGALESQLAGLRAQREQLVALVGDDPHSPLVPLQEELAVAIGGIHERLSLLREQAGENNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPVVVGALCVAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRYWKEGRSCKFSGPDCPFSHGVEVPLSGLLPDDGGGGSSWLASLRSGSRVLACYHDRVWYEATAEGPATPA---AGAAASSMLLAVRFKGFEDDGPVSVPADSSHLAPLEAAATAPEIDGVGGGNGXXXXXXXXXXXXXXXXSDLEDAWAADAAAAGRGSERDGNMTAGAFFQERVLGDRR 1329
            MTDQGALE QLA LRAQREQLVALVGDD HSPL+PLQEELAVAI GI ERLSLLREQAGEN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EPSFP+VVGALC+APRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCR+WKEGRSCKFSGPDCPFSHGVEVPL GLLPDDGGGGSSWLASLRSGSRVLA YHDRVWYEATAEGPA PA   AGAAASSMLLAVRFKGFE DGPVSVPADSSHLAPLEAA TAPEI GVGGGNG         XXXXX  SDLEDAWAADA AAGRG ERDG+MTAGAFFQERVLGDRR
Sbjct:    1 MTDQGALERQLADLRAQREQLVALVGDDSHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGGSSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPLEAAVTAPEIHGVGGGNGGASDDAEHEXXXXXE-SDLEDAWAADAVAAGRGGERDGSMTAGAFFQERVLGDRR 324
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE4.630e-16189.02Zinc finger CCCH-type with G patch domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:537624..541823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size975
Model size1330
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16679.1prot_E-siliculosus-1a_M_contig86.16679.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 537624..541469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936305.7654154-CDS-E-siliculosus-1a_M_contig86:537623..5381421622936305.7654154-CDS-E-siliculosus-1a_M_contig86:537623..538142Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 537624..538142 -
1696251017.4155016-CDS-E-siliculosus-1a_M_contig86:537623..5381421696251017.4155016-CDS-E-siliculosus-1a_M_contig86:537623..538142Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 537624..538142 -
1622936305.7801926-CDS-E-siliculosus-1a_M_contig86:539042..5393871622936305.7801926-CDS-E-siliculosus-1a_M_contig86:539042..539387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 539043..539387 -
1696251017.432847-CDS-E-siliculosus-1a_M_contig86:539042..5393871696251017.432847-CDS-E-siliculosus-1a_M_contig86:539042..539387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 539043..539387 -
1622936305.8040602-CDS-E-siliculosus-1a_M_contig86:541358..5414691622936305.8040602-CDS-E-siliculosus-1a_M_contig86:541358..541469Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 541359..541469 -
1696251017.451451-CDS-E-siliculosus-1a_M_contig86:541358..5414691696251017.451451-CDS-E-siliculosus-1a_M_contig86:541358..541469Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 541359..541469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936305.8239264-UTR-E-siliculosus-1a_M_contig86:541469..5418231622936305.8239264-UTR-E-siliculosus-1a_M_contig86:541469..541823Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 541470..541823 -
1696251017.4628181-UTR-E-siliculosus-1a_M_contig86:541469..5418231696251017.4628181-UTR-E-siliculosus-1a_M_contig86:541469..541823Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 541470..541823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16679.1

>prot_E-siliculosus-1a_M_contig86.16679.1 ID=prot_E-siliculosus-1a_M_contig86.16679.1|Name=mRNA_E-siliculosus-1a_M_contig86.16679.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=325bp
MTDQGALESQLAGLRAQREQLVALVGDDPHSPLVPLQEELAVAIGGIHER
LSLLREQAGENNEREEEGGQQATTGASTPPPPSPTQEQEQEQQQQEPSFP
VVVGALCVAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRYW
KEGRSCKFSGPDCPFSHGVEVPLSGLLPDDGGGGSSWLASLRSGSRVLAC
YHDRVWYEATAEGPATPAAGAAASSMLLAVRFKGFEDDGPVSVPADSSHL
APLEAAATAPEIDGVGGGNGESSDGGEHEKEEEEEESDLEDAWAADAAAA
GRGSERDGNMTAGAFFQERVLGDRR
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mRNA from alignment at E-siliculosus-1a_M_contig86:537624..541823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16679.1 ID=mRNA_E-siliculosus-1a_M_contig86.16679.1|Name=mRNA_E-siliculosus-1a_M_contig86.16679.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4200bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:537624..541823- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGGGTGACCCCGCCCGTTCGATCTGTCCTCTCCCCCTGCCGACTGCGCTG
CTGTCGGTGTGGGACGCACAACCCGGTCCGGTCTGCTGCCAGCTGGAGGA
TCTCCTCCTAGGGGGGAGGAAAGAAACAAAAACAGCAGAGCTTGATTGCT
ATTGCTGTTGTTGTGCTGTTTGGTGTCGATAACCTGCGCACCCGCGCAGC
TCTCGAACGGCAGTCCCCAATACCTGATGCTCTCGAAAACGGCAGCAGGC
AGGCAGCAAAGAGGAAGTAGTAAGTTCAATGTGTGCCGGAGGTTGCTGCT
GCTTACACCCGTAGCGTCACAACCCCGCCGTGCGCACGATAGAGACAGGG
GCTGATGACGGATCAAGGCGCGCTTGAGAGTCAGCTGGCGGGCCTCCGAG
CTCAGCGGGAGCAGCTCGTGGCGCTGGTGGGCGACGATCCGCACAGCCCG
TTGGTTCCCCTTCAGGTATGTACGGCAGTACCGCGAACACAAGGACTCGC
CGCAAGTTGGCACCAGACACCATCTGTTTACTGCTGTGGTAGCAGGGGTT
CCTCCTCCCTGTACATGACGGAGAATACCACCCCCCCGGGACGATTTCCC
CGCTGACATGTCATATTACTCCCGCCTCCCGCCACAGGAGAGGCCCAAAT
CTAACGATGGTCATATCGAAAGTCATTTTGTGACATCATCTTTCAATGCT
ATTTTGCCCAACAATCGGTAGCGCAACACTCTACAGCAGTTATTATGTGT
GGGGATCGAGCGATCCCGTTTCGTCTTAAGAGGGAGGGTGTGTTATTTAA
CGTCATGTGCTGTCGTGATGACAACGGAGGCGGAGGTCATCGTATCGGCC
GAAGCATGGCATTGTTTCCACGAAGAGCACACAAGGGGGCATGTGCGGGG
GATAGAGGCCGGGAAACCTATTTCCACACGAAGACGCCGTTTCAGGAGGA
GTTTTTTTTTGCACTGAATAAACGACTGCTGTTCGAAATACACAGCAGCA
GCAATCGAAAAGGGAATGTGTTGTTAGGTGTTGTTGAAAGTCTTTGCAGT
GAGCGTGTGAGAATATCCTGCTTGATACGGGGTCTGTAAGCCTATACGCT
CAAGTACATCAGGATGCGGGTATGGTGATCACAAAACCTTTTTTAAGGGG
TTTGTTGCACTTGTGACAACACTGCTGACTGCGAGGCGTGTTGCCCGGTT
TCACCGTAGGTTCCATAAGACACCCCTGGACCGATCTTCAAAGCTCGACT
ACTCCACTACGAAGAGGATACCGAAACTGAAGTATATGTACGTGTTCGGA
GAGCTCTCGACGAGACGGTTCCAACGCCTCCCGCCATTTTCGGCACCGTC
ACTGCTTTTCCTGCCGAGGTACAGCAGTATCGAGTTCCGAAATCTGTCCA
GGGGGGGTGATATCTTATGCATCCCACGGTATGTCAACTCTAATCACAAT
TTGGAGAGACGAAGGCCGCAAGGTAGGCACACAAAAAACGACGGAAATGT
GCGGGATAACTTGAGAACAATAACTACGACGGAAATGTGCGGGATAACTT
GAGAACAATAACTCTAAAACTAGAGAGGGACAGCTCTCTCAGGAACAGTT
TTACGGCGCTACACTACTGCTTAGTATGTATGCCTTCGAGAGGACAGGAG
AACATGCACACGAGGAGTATCCCTTCAGGAGGACAAGAGAACACATGCAT
GAGAAGAGTCCGCGGTGGTTGGCAGGCTTTTTTTGTATTGGTGCAGAACA
GCAGGGTGCTATTTTCACAAATGACGAGGAAGCAGCAGCAGCAGGAGCAG
CAGCAGCAGCAGCAGGAGCCCGTCCATTCATCCATCCATTCACCATCCGT
CCAAACCGTACTCTCATGCACTTGACTGGAACAGCTCAGCTCGCCACCTT
GTCGCCCAAAAACTCGTCACGTGGATGAACGCCAAGCGATACCGTGAGGT
TGCGAGTCAGCCCACAGGGTTGCGAGCGATTTTCAAAGCGTAACTTGTCC
ACAACCAGGAGGTTACCACTGTCGAAAAGGGCGGTTTTGGAAATATCTCA
TCGAGAGCTTTCCTGAGAAGTAGTATCAGTTGGCGCTCGCACCCTTCTGG
TTGTGGAGAAATTACGCTTTGAAAATCGATCGCACCCCTGTGCGCTGACT
CGCAACCTTACGATGGTCGTTCTTTCGACCCCCGCCCAAACACAAAACAG
GACCACAACAGCGACGACGGGAGTACTCGCGATACCCCCAGCAGCCGAAC
CCAGTAGACAGACACGCCCGACGACCACACCAACACCCCCAAATTCACAA
AAAAGGACAAGATTGAGATTTGTACAAACACCTCGATGTAGTATACGCCG
GTCATTCGCAGGTACATACACGCCATCCGCCGCGCGTCCGACCTCCTCTT
CGCACACACAACTCACTCACTCACGCACGCACGCAGGAAGAGTTAGCAGT
CGCGATCGGCGGCATCCATGAGAGGCTCTCGTTGTTGCGCGAGCAAGCGG
GAGAGAACAACGAGCGGGAGGAGGAGGGGGGACAGCAGGCAACAACCGGG
GCCTCAACCCCCCCCCCTCCCTCTCCCACCCAAGAACAAGAACAAGAACA
GCAGCAACAAGAGCCATCGTTCCCGGTGGTGGTCGGCGCCCTCTGCGTGG
CCCCCCGGGTCTTCGACCGTCGGCGGGCGCGTGCCGTGGTGGAGGAGGTG
GAGAGCTCCAAGGGCACCTGCCTCGTGACCTGGGTACACCCCCGAAAGCA
CGGGGAGATCGTCTGCCGCTACTGGAAGGAGGTAACGGGCGGGGGGGGTA
GCGTTTCTTGCTGGTTTGAATGTTGCAGTAGTGTTTCGCTCTGGCGAGTG
TTCGTGCTGCCGCTGCATCTCTGAATTGTTGTTCCCGTTTTGTCGGTCGG
TCGGTCGGTCGGTCGGTGCCGACGGTTTCGTTCTGCCAAACGAGCGAGCG
AGGGGGGGTAATTTTGTTGCTTGTGTAGAAGCGGGTGCCGCTCGAAGAAC
AGGCATGCGAGGCAGGCAGGCCGCGGTTCTTGGCGGCCAGAGGTTTGTCT
ACGCCACTCGGCATCGACGGCAGAGTAAATAAAGCTCCTCTGCTCGCTCG
CAAACGAACCAAACCCTCCCGTGTGCATTTTTTGCCTCCCGCGCCGTAAG
GTTGATTGATCCCGTGCCGCGTACAAACCCACTCCCTGGAACACAGAACA
TACATCGCATCCAGAAGCAGATTAAGGACCTACGCCTATGATCGCGTGAT
GTGGTACTTTCAAAGCATTGAGTGGGTAGCGGACAGGGTAGAAGGTTGGT
CGGGCGATCAAAGGTGTTTATTCCCGGGAAGAGTTGGGCGTTGGTGTGCG
AGCAAAGCGCCTCTCCCGTCCGCACTCGTCCCGTGTTTTCTCTTGTTCGA
TTGTGCCTTGCTTCTTTGTACCCGTCTTTGTGTGAGAGCCTGTAGGTGTG
CGTCCGTCTCTGTGTCTGGTGTTCTTCTTCCCCACCGTTTTTCTTTCTTC
AACCGCCCTTGTCATCGTCGTCCGATGCCATCTCTTGACGGTGGTCGCTG
CTGCTCCGCCACCGCTACCGCTGCTGATTCCTTGTGTCATTACGTGGTAA
TGGTTGCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCACC
GCATGCATCCCCCTGGTCTCTCCGTTCCCAGGGAAGAAGCTGCAAGTTCT
CCGGCCCGGACTGTCCGTTCTCTCACGGCGTCGAAGTGCCGCTGTCGGGC
CTGCTTCCCGATGACGGCGGCGGCGGCAGTAGTTGGCTCGCGAGCCTGCG
CTCTGGCTCCCGGGTCCTCGCCTGCTACCACGACCGCGTGTGGTACGAGG
CCACCGCAGAGGGTCCCGCCACGCCGGCGGCGGGGGCGGCGGCGTCATCG
ATGCTGCTGGCCGTGCGCTTCAAGGGTTTCGAGGACGACGGACCTGTGTC
CGTTCCCGCCGACAGCTCCCACCTGGCGCCGCTGGAGGCCGCTGCTACGG
CGCCGGAGATAGACGGCGTTGGGGGCGGGAACGGGGAGTCTTCCGACGGC
GGCGAACACGAGAAAGAGGAGGAGGAGGAGGAGAGCGACCTGGAAGACGC
GTGGGCAGCGGACGCGGCCGCCGCTGGCCGCGGTAGCGAACGAGACGGTA
ACATGACGGCGGGGGCGTTTTTTCAGGAGAGGGTGCTGGGGGATCGCCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:537624..541823-

>mRNA_E-siliculosus-1a_M_contig86.16679.1 ID=mRNA_E-siliculosus-1a_M_contig86.16679.1|Name=mRNA_E-siliculosus-1a_M_contig86.16679.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1950bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:537624..541823- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACGGATCAAGGCGCGCTTGAGAGTCAGCTGGCGGGCCTCCGAGCTCA
GCGGGAGCAGCTCGTGGCGCTGGTGGGCGACGATCCGCACAGCCCGTTGG
TTCCCCTTCAGATGACGGATCAAGGCGCGCTTGAGAGTCAGCTGGCGGGC
CTCCGAGCTCAGCGGGAGCAGCTCGTGGCGCTGGTGGGCGACGATCCGCA
CAGCCCGTTGGTTCCCCTTCAGGAAGAGTTAGCAGTCGCGATCGGCGGCA
TCCATGAGAGGCTCTCGTTGTTGCGCGAGCAAGCGGGAGAGAACAACGAG
CGGGAGGAGGAGGGGGGACAGCAGGCAACAACCGGGGCCTCAACCCCCCC
CCCTCCCTCTCCCACCCAAGAACAAGAACAAGAACAGCAGCAACAAGAGC
CATCGTTCCCGGTGGTGGTCGGCGCCCTCTGCGTGGCCCCCCGGGTCTTC
GACCGTCGGCGGGCGCGTGCCGTGGTGGAGGAGGTGGAGAGCTCCAAGGG
CACCTGCCTCGTGACCTGGGTACACCCCCGAAAGCACGGGGAGATCGTCT
GCCGCTACTGGAAGGAGGAAGAGTTAGCAGTCGCGATCGGCGGCATCCAT
GAGAGGCTCTCGTTGTTGCGCGAGCAAGCGGGAGAGAACAACGAGCGGGA
GGAGGAGGGGGGACAGCAGGCAACAACCGGGGCCTCAACCCCCCCCCCTC
CCTCTCCCACCCAAGAACAAGAACAAGAACAGCAGCAACAAGAGCCATCG
TTCCCGGTGGTGGTCGGCGCCCTCTGCGTGGCCCCCCGGGTCTTCGACCG
TCGGCGGGCGCGTGCCGTGGTGGAGGAGGTGGAGAGCTCCAAGGGCACCT
GCCTCGTGACCTGGGTACACCCCCGAAAGCACGGGGAGATCGTCTGCCGC
TACTGGAAGGAGGGAAGAAGCTGCAAGTTCTCCGGCCCGGACTGTCCGTT
CTCTCACGGCGTCGAAGTGCCGCTGTCGGGCCTGCTTCCCGATGACGGCG
GCGGCGGCAGTAGTTGGCTCGCGAGCCTGCGCTCTGGCTCCCGGGTCCTC
GCCTGCTACCACGACCGCGTGTGGTACGAGGCCACCGCAGAGGGTCCCGC
CACGCCGGCGGCGGGGGCGGCGGCGTCATCGATGCTGCTGGCCGTGCGCT
TCAAGGGTTTCGAGGACGACGGACCTGTGTCCGTTCCCGCCGACAGCTCC
CACCTGGCGCCGCTGGAGGCCGCTGCTACGGCGCCGGAGATAGACGGCGT
TGGGGGCGGGAACGGGGAGTCTTCCGACGGCGGCGAACACGAGAAAGAGG
AGGAGGAGGAGGAGAGCGACCTGGAAGACGCGTGGGCAGCGGACGCGGCC
GCCGCTGGCCGCGGTAGCGAACGAGACGGTAACATGACGGCGGGGGCGTT
TTTTCAGGAGAGGGTGCTGGGGGATCGCCGGGGAAGAAGCTGCAAGTTCT
CCGGCCCGGACTGTCCGTTCTCTCACGGCGTCGAAGTGCCGCTGTCGGGC
CTGCTTCCCGATGACGGCGGCGGCGGCAGTAGTTGGCTCGCGAGCCTGCG
CTCTGGCTCCCGGGTCCTCGCCTGCTACCACGACCGCGTGTGGTACGAGG
CCACCGCAGAGGGTCCCGCCACGCCGGCGGCGGGGGCGGCGGCGTCATCG
ATGCTGCTGGCCGTGCGCTTCAAGGGTTTCGAGGACGACGGACCTGTGTC
CGTTCCCGCCGACAGCTCCCACCTGGCGCCGCTGGAGGCCGCTGCTACGG
CGCCGGAGATAGACGGCGTTGGGGGCGGGAACGGGGAGTCTTCCGACGGC
GGCGAACACGAGAAAGAGGAGGAGGAGGAGGAGAGCGACCTGGAAGACGC
GTGGGCAGCGGACGCGGCCGCCGCTGGCCGCGGTAGCGAACGAGACGGTA
ACATGACGGCGGGGGCGTTTTTTCAGGAGAGGGTGCTGGGGGATCGCCGG
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