prot_E-siliculosus-1a_M_contig86.16640.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16640.1
Unique Nameprot_E-siliculosus-1a_M_contig86.16640.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length207
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16640.1 vs. uniprot
Match: D8LBS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS1_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 2.100e-75
Identity = 194/206 (94.17%), Postives = 195/206 (94.66%), Query Frame = 0 
Query:    1 MQEDQDFEEDDGEELSAMGWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAHGIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVLPLAPALALGMETNFGLR 206
            MQE QDFEEDD  ELSAM WESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    IRAMSYQMTGNFLAACNEHEAAAKLAEQRQV PLAPA ALGMETNFG+R
Sbjct:    1 MQEHQDFEEDDDGELSAMAWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVHPLAPAFALGMETNFGIR 206
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16640.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS1_ECTSI2.100e-7594.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 33..66
e-value: 67.0
score: 7.7
coord: 73..106
e-value: 0.33
score: 20.0
NoneNo IPR availablePFAMPF13424TPR_12coord: 35..104
e-value: 1.5E-7
score: 31.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 14..202
e-value: 9.1E-17
score: 63.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 31..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:233393..235558 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16640.1mRNA_E-siliculosus-1a_M_contig86.16640.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig86 233393..235558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig86.16640.1 ID=prot_E-siliculosus-1a_M_contig86.16640.1|Name=mRNA_E-siliculosus-1a_M_contig86.16640.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=207bp
MQEDQDFEEDDGEELSAMGWESAIRGKSGREIAHLHQSWAAAFLARGSFN
KAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDFSAAAAHLKTAL
KIAEGTGDAPLVLSVMVNRAICEIHLGDCKAAATRSRRAFIRAEAEGGPE
TVLLAHGIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVLPLAPALALGME
TNFGLR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat