mRNA_E-siliculosus-1a_M_contig86.16640.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16640.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16640.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16640.1 vs. uniprot
Match: D8LBS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS1_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 2.100e-75
Identity = 194/206 (94.17%), Postives = 195/206 (94.66%), Query Frame = 1 
Query:    1 MQEDQDFEEDDGEELSAMGWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAHGIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVLPLAPALALGMETNFGLR 618
            MQE QDFEEDD  ELSAM WESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    IRAMSYQMTGNFLAACNEHEAAAKLAEQRQV PLAPA ALGMETNFG+R
Sbjct:    1 MQEHQDFEEDDDGELSAMAWESAIRGKSGREIAHLHQSWAAAFLARGSFNKAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVHPLAPAFALGMETNFGIR 206
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16640.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.790e-15
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = -2 
Query:  258 MKARRERVAAALQSPRWISQMARLTITDNTKGASPVPSAIFRAVFKCAAAAEKSP 422
            MKARRERVAAALQSPRWISQMARL ITDNTKGASPV SAIFRAVF    +A + P
Sbjct:    1 MKARRERVAAALQSPRWISQMARLIITDNTKGASPVSSAIFRAVFNFPRSACRKP 55
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBS1_ECTSI2.100e-7594.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDL5_9PHAE7.790e-1581.82eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:233393..235558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size621
Model size621
Exons3
Ec32 orthologEc-27_002920.1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16640.1prot_E-siliculosus-1a_M_contig86.16640.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 233393..235558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936309.9228437-CDS-E-siliculosus-1a_M_contig86:233392..2335511622936309.9228437-CDS-E-siliculosus-1a_M_contig86:233392..233551Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 233393..233551 +
1696251019.247685-CDS-E-siliculosus-1a_M_contig86:233392..2335511696251019.247685-CDS-E-siliculosus-1a_M_contig86:233392..233551Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 233393..233551 +
1622936309.9431741-CDS-E-siliculosus-1a_M_contig86:233815..2341321622936309.9431741-CDS-E-siliculosus-1a_M_contig86:233815..234132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 233816..234132 +
1696251019.2593918-CDS-E-siliculosus-1a_M_contig86:233815..2341321696251019.2593918-CDS-E-siliculosus-1a_M_contig86:233815..234132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 233816..234132 +
1622936309.9599044-CDS-E-siliculosus-1a_M_contig86:235413..2355581622936309.9599044-CDS-E-siliculosus-1a_M_contig86:235413..235558Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 235414..235558 +
1696251019.2706676-CDS-E-siliculosus-1a_M_contig86:235413..2355581696251019.2706676-CDS-E-siliculosus-1a_M_contig86:235413..235558Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 235414..235558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16640.1

>prot_E-siliculosus-1a_M_contig86.16640.1 ID=prot_E-siliculosus-1a_M_contig86.16640.1|Name=mRNA_E-siliculosus-1a_M_contig86.16640.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=207bp
MQEDQDFEEDDGEELSAMGWESAIRGKSGREIAHLHQSWAAAFLARGSFN
KAQEHLDHALEAWTGYDEPGLQARAWCLKASCSGEAGDFSAAAAHLKTAL
KIAEGTGDAPLVLSVMVNRAICEIHLGDCKAAATRSRRAFIRAEAEGGPE
TVLLAHGIRAMSYQMTGNFLAACNEHEAAAKLAEQRQVLPLAPALALGME
TNFGLR*
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mRNA from alignment at E-siliculosus-1a_M_contig86:233393..235558+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16640.1 ID=mRNA_E-siliculosus-1a_M_contig86.16640.1|Name=mRNA_E-siliculosus-1a_M_contig86.16640.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2166bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:233393..235558+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAAGAGGACCAAGACTTCGAGGAAGACGATGGTGAGGAGCTGTCGGC
GATGGGTTGGGAATCGGCGATACGAGGAAAGAGCGGCCGTGAGATCGCGC
ACCTCCACCAGAGCTGGGCGGCAGCTTTTCTCGCGCGTGGTTCCTTCAAC
AAAGCCCAGGTTGGGGAACAAAATGCATCGAACTGCAGCTGGCTCGGAGA
GATTGCCATTCATAAATCGCTTGTGCTAAACGTATGTCCCAGCAGGCTTC
TCGTGGCTTCTTGCTCATGTCGTGCATATGGACCTTGGTGCAGTCCACAG
ATGAACACAGACGGCCTCGCCAAAGGTAGGTGGCCTTGTCCGCGCCTGCT
TCGATTTAAACCCACACTCTTTTGGTCTTCCGACACAACCAAATACTTCG
AAGTGCAACATAACGTAACTCAGGAACACCTCGACCACGCCCTCGAAGCA
TGGACCGGCTACGACGAGCCCGGCCTCCAGGCCCGCGCATGGTGCCTAAA
GGCGTCGTGTAGCGGCGAGGCCGGCGACTTCTCTGCCGCTGCGGCGCACT
TGAAAACTGCCCTGAAGATCGCAGAGGGCACGGGCGACGCCCCTTTGGTG
TTATCCGTAATGGTCAACCGTGCCATCTGCGAGATCCACCTCGGGGACTG
CAAGGCCGCCGCAACTCGCTCTCGGCGCGCCTTCATCAGGGCCGAGGCGG
AGGGTGGGCCTGAGACAGTCCTTTTGGCGCACGGTATCCGGTACGTAGGC
GTCTCATGCCATAGGCTGGAGACACTGTGGAGTTTCTCTGGTGTTGTCGA
TGTCGTTGCTGCAAGTGCAACGAACCCCGGGGGAGCGGGGGGATATCGCC
ACAGTCAACAGAGGTTCTGATCTTCTTGGCCTGCCCAGGAAGTCGAGGAA
CAATAATCATTCAACACCACCGCAACTTCGCAGGAGGTATGCCCTACGGG
TACCAACGCTATTAGAGTCCTGTCGAGTACATCCGTTGGTTTGGAGAGCC
GTTGTTGGGCGACTACGGCACCTGCGAAACTTGGTGGTGGTACAATAGCA
GATTATTACTAGATATGTAGATTTCTGGAAACATTCAAAGTTTACGCCGT
TCACTTGGCTAAAGACCCGTCTGTAGTGTAAGCCTAAGCTCACAATATCG
ACCACGGTCACCAGAGCGTGTGGGATGAGGGTTGCGCAGAAAATTTTGGG
CACTTTTCGCTGTTGCTGCTTTCGTAAAGCTATGGGGTAATCTGAAGGGT
AATTTTTCCGGGCAGCACAGAAAACGGATCTCATCCTATGACGCAACCAT
ACCTCCCCGAACAACGATTTTCCAGAGCTGTGGCCGCCCAAGCCGACTGT
AAACCGAGCGATCTACCAGATTCCTATATCTACGTATATCGAGTCAGAAA
TGGTGCAACTGTTGTCCCATATGCAACCGAGACCACGGTTCTTACTCAAC
TTGGAGCGAGTGTTGATTGCAACACCTACAGGCGCTCCTCTCAATTTTCC
CAGAGGAGGTGACAAACGTTTTAGACTCCGACCTTGAGGCACTGCGGTAT
ATGTTCGAACGCGCGGAGTGATGTACTTTAAACAATACTATTTACTTGGT
TTCGCGTCGATTTCCCATATGAAGCGAAAGTACGAGGAGCATAAAGGCGC
CAGGAGTACACACCCCGTCAGAAAGAGTTGACTCGTCTTAGCTTTTTCAT
GGTATGGCGTCGAAAGTTGTTGCGCGTACTAAATGTGGGAGAGGTGGGCG
GAAGGACGCATATCAACTTTGTGCTGGCATAAGCGTCATGCCGAGACTGA
CGTGGAATGCAAAATCGTGGGCCTCACCTGCATTTATGGGAATAATGGGA
AGGGCTAAAGGAAGTTTCTGCTGGACAGCTGTACAAATGTCTACCTCCAC
GATACACGAGCCCCGCCGCTCCCCATCGAACAACATTTTCCCGGAAATGC
GGCCCGTACCTACACATCCATTCATCCCCTATTTACATACTGACATGCAA
TCTGTAACTTTCTCTCCCCAGGGCCATGAGCTACCAAATGACCGGGAACT
TCCTGGCAGCATGTAACGAGCACGAGGCCGCGGCGAAACTTGCCGAACAA
CGCCAGGTCCTGCCGCTAGCACCCGCTCTTGCTTTGGGCATGGAAACCAA
TTTCGGCTTAAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:233393..235558+

>mRNA_E-siliculosus-1a_M_contig86.16640.1 ID=mRNA_E-siliculosus-1a_M_contig86.16640.1|Name=mRNA_E-siliculosus-1a_M_contig86.16640.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:233393..235558+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAAGAGGACCAAGACTTCGAGGAAGACGATGGTGAGGAGCTGTCGGC
GATGGGTTGGGAATCGGCGATACGAGGAAAGAGCGGCCGTGAGATCGCGC
ACCTCCACCAGAGCTGGGCGGCAGCTTTTCTCGCGCGTGGTTCCTTCAAC
AAAGCCCAGATGCAAGAGGACCAAGACTTCGAGGAAGACGATGGTGAGGA
GCTGTCGGCGATGGGTTGGGAATCGGCGATACGAGGAAAGAGCGGCCGTG
AGATCGCGCACCTCCACCAGAGCTGGGCGGCAGCTTTTCTCGCGCGTGGT
TCCTTCAACAAAGCCCAGGAACACCTCGACCACGCCCTCGAAGCATGGAC
CGGCTACGACGAGCCCGGCCTCCAGGCCCGCGCATGGTGCCTAAAGGCGT
CGTGTAGCGGCGAGGCCGGCGACTTCTCTGCCGCTGCGGCGCACTTGAAA
ACTGCCCTGAAGATCGCAGAGGGCACGGGCGACGCCCCTTTGGTGTTATC
CGTAATGGTCAACCGTGCCATCTGCGAGATCCACCTCGGGGACTGCAAGG
CCGCCGCAACTCGCTCTCGGCGCGCCTTCATCAGGGCCGAGGCGGAGGGT
GGGCCTGAGACAGTCCTTTTGGCGCACGGTATCCGGAACACCTCGACCAC
GCCCTCGAAGCATGGACCGGCTACGACGAGCCCGGCCTCCAGGCCCGCGC
ATGGTGCCTAAAGGCGTCGTGTAGCGGCGAGGCCGGCGACTTCTCTGCCG
CTGCGGCGCACTTGAAAACTGCCCTGAAGATCGCAGAGGGCACGGGCGAC
GCCCCTTTGGTGTTATCCGTAATGGTCAACCGTGCCATCTGCGAGATCCA
CCTCGGGGACTGCAAGGCCGCCGCAACTCGCTCTCGGCGCGCCTTCATCA
GGGCCGAGGCGGAGGGTGGGCCTGAGACAGTCCTTTTGGCGCACGGTATC
CGGGCCATGAGCTACCAAATGACCGGGAACTTCCTGGCAGCATGTAACGA
GCACGAGGCCGCGGCGAAACTTGCCGAACAACGCCAGGTCCTGCCGCTAG
CACCCGCTCTTGCTTTGGGCATGGAAACCAATTTCGGCTTAAGGTAAGGC
CATGAGCTACCAAATGACCGGGAACTTCCTGGCAGCATGTAACGAGCACG
AGGCCGCGGCGAAACTTGCCGAACAACGCCAGGTCCTGCCGCTAGCACCC
GCTCTTGCTTTGGGCATGGAAACCAATTTCGGCTTAAGGTAA
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