prot_E-siliculosus-1a_M_contig8.16053.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16053.1
Unique Nameprot_E-siliculosus-1a_M_contig8.16053.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length496
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16053.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 754 bits (1946), Expect = 3.930e-271
Identity = 427/490 (87.14%), Postives = 437/490 (89.18%), Query Frame = 0 
Query:    6 CCNANRCSANRVSLVQRCGKQMVLLLXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKEGILGGLRRRLRKTALGGQDKRXXXXXXXRDSHRLERVSNTMASNETDCFLAPPFPGDVVVVSVSSGGGDESVGEDRRDYDDAHGGDRRKARQRQEGRXXXXXXXRGSRHGSDKPRKLVLLTHAIVAVGPGVVVKPSPLPDAGXXXXXXXXXXXXXXXXXXRGGPVETAGAISLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASIPTTGNNNGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVSLQGGLPSGLLGAGGRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVTRRVAVVLVRLGREELWREGEGGGGTPPQKSPAER 495
            CC    CS NRVSLVQRCGKQ+VLL XXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPR IVSRGVGLALRPP PLEK+GILGGL+RRLRK A G QD  XXXXXXXRD+HRLERVSNTMASNETDCF+APPFPGDVVVVSVSSGGGDESVGED +DYDDAHGGDRRKARQR+EGR       RGSRHGS KPRKLVLLT AIVAVGPGVVVKPSP PDA                   RGGPV T GA+SLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRAS+PTTGNN GANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGV LQG +PSGLL AG RGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKV RRVAVVLVRLGREELWREGEGGGGTPPQ  PAER
Sbjct:   12 CC----CSTNRVSLVQRCGKQVVLLXXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDH-XXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDESVGEDGKDYDDAHGGDRRKARQRREGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQ--RGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGGGGTPPQIRPAER 494
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16053.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE3.930e-27187.14Altered inheritance of mitochondria protein 24, mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 267..350
e-value: 1.5E-8
score: 34.7
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10coord: 248..364
e-value: 4.0E-10
score: 41.2
NoneNo IPR availablePANTHERPTHR31801:SF0coord: 270..359
NoneNo IPR availablePANTHERPTHR31801FAMILY NOT NAMEDcoord: 270..359
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 415..437
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 28..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..414
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 438..495
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 39..43
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..45
score: 0.639
NoneNo IPR availableTMHMMTMhelixcoord: 415..437
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 269..362

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:277237..279412 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16053.1mRNA_E-siliculosus-1a_M_contig8.16053.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig8 277135..280295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16053.1 ID=prot_E-siliculosus-1a_M_contig8.16053.1|Name=mRNA_E-siliculosus-1a_M_contig8.16053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=496bp
MFSRCCCNANRCSANRVSLVQRCGKQMVLLLLLMLLMLAREDADAGVMGV
EMIEVKGGCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKEGILGG
LRRRLRKTALGGQDKRQQQQQQQRDSHRLERVSNTMASNETDCFLAPPFP
GDVVVVSVSSGGGDESVGEDRRDYDDAHGGDRRKARQRQEGRGGDRPAAR
GSRHGSDKPRKLVLLTHAIVAVGPGVVVKPSPLPDAGGGGGGGRGGSSLS
RRQQQRGGPVETAGAISLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSR
AVGWTSGVTCLTGTGGRASIPTTGNNNGANSPAGAFTTFVGPGTVYVQTH
SLPGLRRLLLPKSGVSLQGGLPSGLLGAGGRGAGALFAPRGGPPTVGLSL
KRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHA
VQVVRSLAKVTRRVAVVLVRLGREELWREGEGGGGTPPQKSPAER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016031Trp_RNA-bd_attenuator-like_dom
IPR036983AIM24_sf
IPR002838AIM24