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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16053.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE) HSP 1 Score: 768 bits (1982), Expect = 2.580e-271 Identity = 436/503 (86.68%), Postives = 447/503 (88.87%), Query Frame = 1
Query: 79 ITRKVPSEMFSRCCCNANRCSANRVSLVQRCGKQMVLLLXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKEGILGGLRRRLRKTALGGQDKRXXXXXXXRDSHRLERVSNTMASNETDCFLAPPFPGDVVVVSVSSGGGDESVGEDRRDYDDAHGGDRRKARQRQEGRXXXXXXXRGSRHGSDKPRKLVLLTHAIVAVGPGVVVKPSPLPDAGXXXXXXXXXXXXXXXXXXRGGPVETAGAISLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASIPTTGNNNGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVSLQGGLPSGLLGAGGRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVTRRVAVVLVRLGREELWREGEGGGGTPPQKSPAER 1587
+TRKVPSEMF CCC S NRVSLVQRCGKQ+VLL XXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPR IVSRGVGLALRPP PLEK+GILGGL+RRLRK A G QD XXXXXXXRD+HRLERVSNTMASNETDCF+APPFPGDVVVVSVSSGGGDESVGED +DYDDAHGGDRRKARQR+EGR RGSRHGS KPRKLVLLT AIVAVGPGVVVKPSP PDA RGGPV T GA+SLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRAS+PTTGNN GANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGV LQG +PSGLL AG RGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKV RRVAVVLVRLGREELWREGEGGGGTPPQ PAER
Sbjct: 1 MTRKVPSEMF-HCCC-----STNRVSLVQRCGKQVVLLXXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDH-XXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDESVGEDGKDYDDAHGGDRRKARQRREGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQ--RGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGGGGTPPQIRPAER 494
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 1488 |
| Model size | 2473 |
| Exons | 2 |
| Ec32 ortholog | Ec-10_006230.1 |
| Ec32 ortholog description | Mitochondrial biogenesis protein AIM24 |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936159.3949459-UTR-E-siliculosus-1a_M_contig8:277134..277236 | 1622936159.3949459-UTR-E-siliculosus-1a_M_contig8:277134..277236 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 277135..277236 + |
| 1696250954.5835688-UTR-E-siliculosus-1a_M_contig8:277134..277236 | 1696250954.5835688-UTR-E-siliculosus-1a_M_contig8:277134..277236 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 277135..277236 + |
| 1622936159.438722-UTR-E-siliculosus-1a_M_contig8:279412..280295 | 1622936159.438722-UTR-E-siliculosus-1a_M_contig8:279412..280295 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 279413..280295 + |
| 1696250954.625317-UTR-E-siliculosus-1a_M_contig8:279412..280295 | 1696250954.625317-UTR-E-siliculosus-1a_M_contig8:279412..280295 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig8 279413..280295 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936159.4113073-CDS-E-siliculosus-1a_M_contig8:277236..277431 | 1622936159.4113073-CDS-E-siliculosus-1a_M_contig8:277236..277431 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig8 277237..277431 + |
| 1696250954.603564-CDS-E-siliculosus-1a_M_contig8:277236..277431 | 1696250954.603564-CDS-E-siliculosus-1a_M_contig8:277236..277431 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig8 277237..277431 + |
| 1622936159.4247391-CDS-E-siliculosus-1a_M_contig8:278119..279412 | 1622936159.4247391-CDS-E-siliculosus-1a_M_contig8:278119..279412 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig8 278120..279412 + |
| 1696250954.6153796-CDS-E-siliculosus-1a_M_contig8:278119..279412 | 1696250954.6153796-CDS-E-siliculosus-1a_M_contig8:278119..279412 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig8 278120..279412 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16053.1 >prot_E-siliculosus-1a_M_contig8.16053.1 ID=prot_E-siliculosus-1a_M_contig8.16053.1|Name=mRNA_E-siliculosus-1a_M_contig8.16053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=496bp
MFSRCCCNANRCSANRVSLVQRCGKQMVLLLLLMLLMLAREDADAGVMGV EMIEVKGGCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKEGILGG LRRRLRKTALGGQDKRQQQQQQQRDSHRLERVSNTMASNETDCFLAPPFP GDVVVVSVSSGGGDESVGEDRRDYDDAHGGDRRKARQRQEGRGGDRPAAR GSRHGSDKPRKLVLLTHAIVAVGPGVVVKPSPLPDAGGGGGGGRGGSSLS RRQQQRGGPVETAGAISLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSR AVGWTSGVTCLTGTGGRASIPTTGNNNGANSPAGAFTTFVGPGTVYVQTH SLPGLRRLLLPKSGVSLQGGLPSGLLGAGGRGAGALFAPRGGPPTVGLSL KRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHA VQVVRSLAKVTRRVAVVLVRLGREELWREGEGGGGTPPQKSPAER* back to topmRNA from alignment at E-siliculosus-1a_M_contig8:277135..280295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig8.16053.1 ID=mRNA_E-siliculosus-1a_M_contig8.16053.1|Name=mRNA_E-siliculosus-1a_M_contig8.16053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3161bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:277135..280295+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) TAGACACGAGTAAGGGCAGAGGCGGCAATTGAGGCATAGCAGTGCCTGTT
TGGCGTTGATGCGGGCCCTTGTCTGGAGATAACGAGGAAGGTACCGAGTG
AGATGTTTTCTCGCTGCTGTTGTAATGCCAACCGTTGTAGCGCGAACCGA
GTGTCCTTGGTACAACGATGCGGGAAGCAAATGGTGCTTCTCCTGTTGCT
GATGTTGCTGATGCTGGCGAGAGAAGATGCTGATGCGGGTGTCATGGGAG
TGGAGATGATCGAAGTGAAGGGTGGCTGCCTCCAGGTTACCTTGAAGGTG
CGACCTCTGCTTTCTTTCGCCGCGCGCTTTCATGAGTGGTACAATTGTAT
GCGGTACGAGAAACTATACAACCCGAGCAGGTTCTCTGCCCCGACCTCTT
CTTGTTGAACTGCTACCCTCCGCCTGGGTGCACGTACATGTCTGTCGCTG
CGAGTGAATGGACTTGTGCACAATGAGAGCCTCATTGTGCGTACGCGCAA
ATTGGACAGCTGCCGCACTCTAGGCGAACTGGCTTCCCCTCCGTCCGTGC
ACCAACGCTGAGGAGGTGCCATGGTGTCTCGTGTCATGCCTACATTCAAC
CAGCACAGAGGCCACACTCCCGAATGGCCTGGCTAGTCATGATGTGATTG
CGCCACACCACCACACCTCCATGCTGTTTCACCTTTCGTCGTCAACTGCT
GACCGGAAATCAATGTTTCACATAGTTGATGGACACTTTGCTCGGGTCTT
GAATGCCTCTTGTCCGAGTTATACCGCCCGGAGTGCTTCTGCGGTGGGCA
CTCAGCGGGTCAACTTGATGGAACCAACTATTGTAGGGCATCACAACAAC
ACAACGATCACAACATCAAACAATCTCAAACACAACATTCAATGAAACGA
CCGACGTTCGATCTCCGCGCTACCGCCGCTACCACTACCGATAGTGACGC
CATTCCTGCCGATGCTGCTGCCGCTACCTCCGCAGGCCGGCGAGCACATC
AAAGCGGACCCCCGTTGCATCGTGTCCCGAGGCGTCGGTCTAGCCCTCCG
CCCGCCGACGCCCCTGGAGAAGGAAGGAATCCTCGGCGGGCTTAGGCGGC
GCCTGCGCAAGACGGCCCTAGGGGGACAGGACAAGCGGCAGCAGCAGCAG
CAGCAGCAGCGAGATAGTCACCGCCTGGAGAGGGTGTCGAACACGATGGC
CTCGAACGAAACGGACTGTTTTCTCGCCCCGCCGTTTCCGGGAGACGTTG
TCGTTGTCTCGGTCAGCAGCGGTGGCGGAGACGAAAGCGTCGGTGAAGAT
AGGCGGGATTATGACGATGCCCACGGCGGCGATCGGCGCAAGGCTAGGCA
ACGGCAAGAGGGTAGGGGCGGGGACCGGCCTGCCGCGAGAGGCAGCAGGC
ACGGCTCCGACAAGCCCCGCAAGCTCGTGCTGCTAACGCATGCGATTGTG
GCCGTCGGCCCGGGGGTTGTCGTGAAGCCCTCGCCCCTCCCAGATGCAGG
AGGAGGAGGAGGAGGAGGGAGGGGGGGGTCTTCCCTCTCCCGCCGACAGC
AGCAGCGTGGCGGGCCTGTTGAAACGGCGGGCGCTATCTCTTTGTGTGAA
GGGCAAGGACCAATCGCGGTGGCCGGCTACGGAAAGCTAAAAAAGTTGCG
GTTGAGGCCGGGGCAGAAGAGGTTGGTGGACTCCTCTCGCGCCGTGGGTT
GGACCAGCGGCGTAACGTGCCTCACTGGCACCGGGGGGCGTGCCTCGATA
CCCACCACCGGCAACAATAATGGAGCCAACAGCCCTGCTGGCGCGTTTAC
CACGTTCGTAGGCCCCGGGACTGTTTACGTTCAGACGCACTCTCTCCCTG
GCTTACGGAGGTTACTCTTGCCCAAGTCGGGAGTGTCGTTGCAAGGGGGC
CTTCCTTCGGGTCTCCTCGGGGCGGGGGGGAGGGGTGCGGGGGCGTTGTT
CGCCCCAAGGGGAGGGCCGCCAACAGTGGGCCTTTCGCTCAAGAGGGGCT
TGGCGAAGCGCGCGAAGGCGGGGGCGAAGCGGGTTTCTCTGGCGGTGGCG
TTCTTCGCCCTGTACCTGGTGGTGTACTCCCTGGTGACGGCGTTGCTCCT
TGAGGGGAGGGACGGCCTTGCCAACGCGCCGCGGCACGCGGTGCAGGTGG
TTCGCTCCCTCGCGAAGGTGACGCGGCGTGTGGCGGTGGTGCTGGTACGG
CTTGGGCGGGAAGAGCTGTGGAGAGAAGGAGAGGGCGGGGGTGGTACACC
TCCGCAGAAAAGCCCTGCAGAACGATAGTGGTAGGGGCTCGGTTTGGGGT
GTTCACCCCAAGGCACACAGCGCAGTAATGCGCCCTTGATAGATTTGTGA
GGTGGCATATTCTCCCTTGTTTGTGTGCCATCTTTTATGCGTATGAATTA
GACTTGTTTTTACGACGACACCTGGGAGTTTGTTGACGGGCTTGCCGCCG
CATGGGGTTTCCGTGTTGTTTCGTTCTGTATGCAAGAAAATGAACGGTTT
GGCAAGGTTGTTTTTCTGCGTGGCCTCGACCAACCAATAGACCATTGGCG
AGAACCCATGGACAAACACGCCCAATGATTCCAGAAGCACCTTGCGTGGC
CATTGAGGGCAGGAATCTCATGCCTGCCGCCAGCAGTAGCATTCGTGAAG
TGTTAGATTTTAGTATGTGTCCTAACACTGTTGTGTGTAGATAGATAGAC
GATCGGGTTGTTGAGTGGACCTACCAGGGAGGCCTTTGTGTACTGTTTTC
CTGAAGGAAGTCTCAACAACTTCTTGATGCCGGTACATACAGCGATTTTA
GTACCCAAGACATGTCGTTCGAGCTTGTTTTGGATTAAGATAGTCATTGC
AGCCTTGACGCATGAACTCGAAAAAAGGTCGGCAATCTGCCAATGCGATA
CGTGGATCGTTTCCAGCGGTCTCGCGCGTCGATGCCAGCGGTCGGATCGA
TACATCAATTTTCATCTCCTTCGACTAAGATTTGCCATTTCGATGTACCG
CCTTGTTGTGGTTGACAGCAGTAGTTGTGTCCCATCCACTGCACCACCAC
TACATGAAGTGTTGTACTGCGTACCAGTATCGTATCACTCTTGGCGTACA
TTTCCTGGCTACAGTGGACAGGTACTGCTGCGCACACATGCTACAGCAGT
AAAAGTCGTAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:277135..280295+ >mRNA_E-siliculosus-1a_M_contig8.16053.1 ID=mRNA_E-siliculosus-1a_M_contig8.16053.1|Name=mRNA_E-siliculosus-1a_M_contig8.16053.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2976bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:277135..280295+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGTTTTCTCGCTGCTGTTGTAATGCCAACCGTTGTAGCGCGAACCGAGT GTCCTTGGTACAACGATGCGGGAAGCAAATGGTGCTTCTCCTGTTGCTGA TGTTGCTGATGCTGGCGAGAGAAGATGCTGATGCGGGTGTCATGGGAGTG GAGATGATCGAAGTGAAGGGTGGCTGCCTCCAGGTTACCTTGAAGATGTT TTCTCGCTGCTGTTGTAATGCCAACCGTTGTAGCGCGAACCGAGTGTCCT TGGTACAACGATGCGGGAAGCAAATGGTGCTTCTCCTGTTGCTGATGTTG CTGATGCTGGCGAGAGAAGATGCTGATGCGGGTGTCATGGGAGTGGAGAT GATCGAAGTGAAGGGTGGCTGCCTCCAGGTTACCTTGAAGGCCGGCGAGC ACATCAAAGCGGACCCCCGTTGCATCGTGTCCCGAGGCGTCGGTCTAGCC CTCCGCCCGCCGACGCCCCTGGAGAAGGAAGGAATCCTCGGCGGGCTTAG GCGGCGCCTGCGCAAGACGGCCCTAGGGGGACAGGACAAGCGGCAGCAGC AGCAGCAGCAGCAGCGAGATAGTCACCGCCTGGAGAGGGTGTCGAACACG ATGGCCTCGAACGAAACGGACTGTTTTCTCGCCCCGCCGTTTCCGGGAGA CGTTGTCGTTGTCTCGGTCAGCAGCGGTGGCGGAGACGAAAGCGTCGGTG AAGATAGGCGGGATTATGACGATGCCCACGGCGGCGATCGGCGCAAGGCT AGGCAACGGCAAGAGGGTAGGGGCGGGGACCGGCCTGCCGCGAGAGGCAG CAGGCACGGCTCCGACAAGCCCCGCAAGCTCGTGCTGCTAACGCATGCGA TTGTGGCCGTCGGCCCGGGGGTTGTCGTGAAGCCCTCGCCCCTCCCAGAT GCAGGAGGAGGAGGAGGAGGAGGGAGGGGGGGGTCTTCCCTCTCCCGCCG ACAGCAGCAGCGTGGCGGGCCTGTTGAAACGGCGGGCGCTATCTCTTTGT GTGAAGGGCAAGGACCAATCGCGGTGGCCGGCTACGGAAAGCTAAAAAAG TTGCGGTTGAGGCCGGGGCAGAAGAGGTTGGTGGACTCCTCTCGCGCCGT GGGTTGGACCAGCGGCGTAACGTGCCTCACTGGCACCGGGGGGCGTGCCT CGATACCCACCACCGGCAACAATAATGGAGCCAACAGCCCTGCTGGCGCG TTTACCACGTTCGTAGGCCCCGGGACTGTTTACGTTCAGACGCACTCTCT CCCTGGCTTACGGAGGTTACTCTTGCCCAAGTCGGGAGTGTCGTTGCAAG GGGGCCTTCCTTCGGGTCTCCTCGGGGCGGGGGGGAGGGGTGCGGGGGCG TTGTTCGCCCCAAGGGGAGGGCCGCCAACAGTGGGCCTTTCGCTCAAGAG GGGCTTGGCGAAGCGCGCGAAGGCGGGGGCGAAGCGGGTTTCTCTGGCGG TGGCGTTCTTCGCCCTGTACCTGGTGGTGTACTCCCTGGTGACGGCGTTG CTCCTTGAGGGGAGGGACGGCCTTGCCAACGCGCCGCGGCACGCGGTGCA GGTGGTTCGCTCCCTCGCGAAGGTGACGCGGCGTGTGGCGGTGGTGCTGG TACGGCTTGGGCGGGAAGAGCTGTGGAGAGAAGGAGAGGGCGGGGGTGGT ACACCTCCGCAGAAAAGCCCTGCAGAACGATAGGCCGGCGAGCACATCAA AGCGGACCCCCGTTGCATCGTGTCCCGAGGCGTCGGTCTAGCCCTCCGCC CGCCGACGCCCCTGGAGAAGGAAGGAATCCTCGGCGGGCTTAGGCGGCGC CTGCGCAAGACGGCCCTAGGGGGACAGGACAAGCGGCAGCAGCAGCAGCA GCAGCAGCGAGATAGTCACCGCCTGGAGAGGGTGTCGAACACGATGGCCT CGAACGAAACGGACTGTTTTCTCGCCCCGCCGTTTCCGGGAGACGTTGTC GTTGTCTCGGTCAGCAGCGGTGGCGGAGACGAAAGCGTCGGTGAAGATAG GCGGGATTATGACGATGCCCACGGCGGCGATCGGCGCAAGGCTAGGCAAC GGCAAGAGGGTAGGGGCGGGGACCGGCCTGCCGCGAGAGGCAGCAGGCAC GGCTCCGACAAGCCCCGCAAGCTCGTGCTGCTAACGCATGCGATTGTGGC CGTCGGCCCGGGGGTTGTCGTGAAGCCCTCGCCCCTCCCAGATGCAGGAG GAGGAGGAGGAGGAGGGAGGGGGGGGTCTTCCCTCTCCCGCCGACAGCAG CAGCGTGGCGGGCCTGTTGAAACGGCGGGCGCTATCTCTTTGTGTGAAGG GCAAGGACCAATCGCGGTGGCCGGCTACGGAAAGCTAAAAAAGTTGCGGT TGAGGCCGGGGCAGAAGAGGTTGGTGGACTCCTCTCGCGCCGTGGGTTGG ACCAGCGGCGTAACGTGCCTCACTGGCACCGGGGGGCGTGCCTCGATACC CACCACCGGCAACAATAATGGAGCCAACAGCCCTGCTGGCGCGTTTACCA CGTTCGTAGGCCCCGGGACTGTTTACGTTCAGACGCACTCTCTCCCTGGC TTACGGAGGTTACTCTTGCCCAAGTCGGGAGTGTCGTTGCAAGGGGGCCT TCCTTCGGGTCTCCTCGGGGCGGGGGGGAGGGGTGCGGGGGCGTTGTTCG CCCCAAGGGGAGGGCCGCCAACAGTGGGCCTTTCGCTCAAGAGGGGCTTG GCGAAGCGCGCGAAGGCGGGGGCGAAGCGGGTTTCTCTGGCGGTGGCGTT CTTCGCCCTGTACCTGGTGGTGTACTCCCTGGTGACGGCGTTGCTCCTTG AGGGGAGGGACGGCCTTGCCAACGCGCCGCGGCACGCGGTGCAGGTGGTT CGCTCCCTCGCGAAGGTGACGCGGCGTGTGGCGGTGGTGCTGGTACGGCT TGGGCGGGAAGAGCTGTGGAGAGAAGGAGAGGGCGGGGGTGGTACACCTC CGCAGAAAAGCCCTGCAGAACGATAG back to top
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