mRNA_E-siliculosus-1a_M_contig99.17746.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI) HSP 1 Score: 108 bits (270), Expect = 3.490e-25 Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 1 Query: 892 AISWHLLQGLGTESSGQEGGVPRHHPGDTRQGVRGARTDWREPRSGPGEEARRMLDRLAG 1071
AISWHLLQGLGTESSGQEG VPRHHP DTRQGVRG RTDWREPRSGP EEAR +LD LAG
Sbjct: 6 AISWHLLQGLGTESSGQEGSVPRHHPEDTRQGVRGTRTDWREPRSGPREEARCILDCLAG 65
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A6H5JLD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD5_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.630e-23 Identity = 58/119 (48.74%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 451 GRRRRYEDGGAFATLHSGRVVHNFCFGCTKGQGCRWREG*KNDGRHCRQNRPSQKPPQLRERLRRLKIRAQEEEACSLRXXXXXXXXXXRQVGGFQESPGDVIVESPTKTRTITELLKK 807
GRRR+YEDGG FAT H GR VH+ CF C KG+GC WRE +EE+AC+ RQVGGFQ SPGDVIVESP KTRTITELL+K
Sbjct: 4 GRRRQYEDGGVFATFHGGRFVHDSCFSCNKGRGCGWRE-------------------------------EEEEQACN------------RQVGGFQGSPGDVIVESPAKTRTITELLEK 79
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.400e-11 Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2 Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VLEPKVPVKRAVFH+ITQE LVKAFE PGQI ENLVQAQE R
Sbjct: 210 QVLEPKVPVKRAVFHEITQEALVKAFEEPGQIDENLVQAQEAR 252
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7Y5SKJ9_9BACT (DNA topoisomerase 1 n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SKJ9_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 6.260e-6 Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 2 Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVPV+R VFH+IT+E ++++ + P QI E+LV+AQE R
Sbjct: 117 CQVLQPKVPVRRLVFHEITKEAILESLQNPRQIDEDLVRAQETR 160
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A3M1SC99_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1SC99_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 1.100e-5 Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 2 Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VLEPKVPV+R VFH+IT+E +++A + P I E+LV+AQE R
Sbjct: 115 CQVLEPKVPVRRLVFHEITREAILEALKHPRSIDEHLVKAQEAR 158
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7C4MUI2_9BACT (DNA topoisomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MUI2_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 1.980e-5 Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2 Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVP+ R VFH+IT E + +A P QI ENLV+AQE R
Sbjct: 116 CEVLQPKVPIHRLVFHEITAEAIQEALRQPRQIDENLVRAQETR 159
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7X7K818_9ACTO (Omega-protein (Fragment) n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X7K818_9ACTO) HSP 1 Score: 54.7 bits (130), Expect = 2.630e-5 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2 Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VL+PKVPVKR VFH+IT+E + +A E +I E LV AQE R
Sbjct: 109 EVLQPKVPVKRMVFHEITREAIARALEATREIDERLVDAQETR 151
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A1F2TG59_9BACT (DNA topoisomerase 1 n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 TaxID=1797183 RepID=A0A1F2TG59_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 4.510e-5 Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 2 Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VL+PKVPV+R VFH+IT++ + +A + PG++ ENLV+AQE R
Sbjct: 111 QVLKPKVPVRRIVFHEITEDAVKEALDHPGRLDENLVRAQESR 153
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7C1FNN9_9BACT (DNA topoisomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1FNN9_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 6.950e-5 Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 2 Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+P+VPV+R VFH+IT+E + +A P QI E LV+AQE R
Sbjct: 116 CEVLQPQVPVRRLVFHEITEEAIREALSNPRQIDEALVRAQETR 159
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7V4HWP4_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HWP4_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 7.900e-5 Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 2 Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVPV+R VFH+IT+E ++ A P QI LV+AQE R
Sbjct: 117 CEVLQPKVPVRRLVFHEITKEAILDALRSPRQIDHALVRAQETR 160 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17746.1 >prot_E-siliculosus-1a_M_contig99.17746.1 ID=prot_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=67bp MPEMTERGRPSAGTSCKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGEback to top mRNA from alignment at E-siliculosus-1a_M_contig99:53141..56371+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17746.1 ID=mRNA_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3231bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:53141..56371+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:53141..56371+ >mRNA_E-siliculosus-1a_M_contig99.17746.1 ID=mRNA_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:53141..56371+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |