mRNA_E-siliculosus-1a_M_contig95.17484.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17484.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE) HSP 1 Score: 201 bits (510), Expect = 4.340e-56 Identity = 154/169 (91.12%), Postives = 157/169 (92.90%), Query Frame = -2 Query: 18 SASAVTSPGYAPGDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT--GDXXXXXXXIPGSGGMVVHGPHLPGGGAFTGGQDGDGGGTGWLGGGTELSKIVGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITTADASDVGQGLDMRDFWSNDNASGAKNGLG 518 SASA+ SP +A DVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT GD XXXXXX+PGSGGMV HGPHLPGGGA GGQDGDGGG GWLGGGTELSKIV EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITTADASDVGQGLDMRDFWSNDNASGAKNGLG Sbjct: 424 SASALISPEFASDDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLTWDGDDXXXXXXVPGSGGMV-HGPHLPGGGALAGGQDGDGGGMGWLGGGTELSKIVREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLITTADASDVGQGLDMRDFWSNDNASGAKNGLG 591 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17484.1 >prot_E-siliculosus-1a_M_contig95.17484.1 ID=prot_E-siliculosus-1a_M_contig95.17484.1|Name=mRNA_E-siliculosus-1a_M_contig95.17484.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=200bp PHAPPPPRPFLAPLALSLLQKSRMSSPCPTSDASAVVIRSSSSPLFPPPPback to top mRNA from alignment at E-siliculosus-1a_M_contig95:187383..187984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17484.1 ID=mRNA_E-siliculosus-1a_M_contig95.17484.1|Name=mRNA_E-siliculosus-1a_M_contig95.17484.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=602bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:187383..187984+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:187383..187984+ >mRNA_E-siliculosus-1a_M_contig95.17484.1 ID=mRNA_E-siliculosus-1a_M_contig95.17484.1|Name=mRNA_E-siliculosus-1a_M_contig95.17484.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1200bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:187383..187984+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |