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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17324.1 vs. uniprot
Match: D7G907_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G907_ECTSI) HSP 1 Score: 283 bits (724), Expect = 1.640e-89 Identity = 187/191 (97.91%), Postives = 188/191 (98.43%), Query Frame = 1 Query: 1 MRISLLQLCLGFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDETKESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADMEAVRGSLQDGIKNVGDQVTEAARXXXXXXXXXXXXXXXXXXXXXXXASTAAGEL 573
MRISLLQLC GFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDETKESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADM+AVRGSLQDGIKNVGDQV EAA XXXXXXXXXXXXXXXXXXXXXXXASTAAGEL
Sbjct: 1 MRISLLQLCFGFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDETKESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADMDAVRGSLQDGIKNVGDQVAEAAXXXXXXXXXXXXXXXXXXXXXXXXASTAAGEL 191
BLAST of mRNA_E-siliculosus-1a_M_contig93.17324.1 vs. uniprot
Match: A0A6H5JLA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA8_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.400e-8 Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 2 Query: 1637 GTVEDPWTTGDVIHGGFEDSTLGDLGKIAS 1726
GT+EDPW +GDVIHGGFEDSTLGDLGKI S
Sbjct: 23 GTIEDPWMSGDVIHGGFEDSTLGDLGKIKS 52
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 576 |
| Model size | 1726 |
| Exons | 3 |
| Ec32 ortholog | Ec-15_002380.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936472.0873532-UTR-E-siliculosus-1a_M_contig93:11296..12446 | 1622936472.0873532-UTR-E-siliculosus-1a_M_contig93:11296..12446 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 11297..12446 - |
| 1696251094.1928427-UTR-E-siliculosus-1a_M_contig93:11296..12446 | 1696251094.1928427-UTR-E-siliculosus-1a_M_contig93:11296..12446 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig93 11297..12446 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig93.17324.1 >prot_E-siliculosus-1a_M_contig93.17324.1 ID=prot_E-siliculosus-1a_M_contig93.17324.1|Name=mRNA_E-siliculosus-1a_M_contig93.17324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=192bp
MRISLLQLCLGFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSL
AVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDET
KESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADMEAVRGSLQDGIKN
VGDQVTEAAREAAESAAAASKQAQEDAEETAEKASTAAGEL* back to topmRNA from alignment at E-siliculosus-1a_M_contig93:11297..14773- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig93.17324.1 ID=mRNA_E-siliculosus-1a_M_contig93.17324.1|Name=mRNA_E-siliculosus-1a_M_contig93.17324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3477bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:11297..14773- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGATCTCTTTGCTTCAACTCTGCCTCGGCTTCCTTGCTGTATGTTT
GGTGTTGGGCGAGCAAGTTGAGGAGGCACCGTCCAGGTGTGTGTTGGTTG
GAACGATGTCACGACGGCGTATGATTTTAGAAGCAGCACTCAACTGCATG
CGATTTACGTACATACAGCAGTAGTTCTGAACGACCTGACGGTCAAAACG
GGTCGTTGCAGTACTCCGAACCCGTCGACAACGCAACCGCGCACGCGCGT
GTGTTGAACCACATCTATCTCTACCCTGAACGCGATAGCCTGTCATACTG
TAGTGTTTCTTCACCACCTCCAACAAGTGTCGCGATGGTTTCTGCAGCTC
CGGTAGTTTTTCATGTTTTATGTGTGGTAAGAGGATATGAATGTGGACAT
GTGTGTGTGTCTTGCGTAGCGCAACCGTAACCGCACAATTGGTCCTGTAT
TGTGGTGTTAATGTGCACGTCTAGCGTCGAGTGTTGCTTCCACGAACATG
AGTAGAGTTGTGTTGCTCCTCCCATCATGATGCTCATCTTGTTGTTTTGG
AAGAAAAGCACACGCGACTGCGTGTGATGGGCGATGGACGCACACATCGG
CTGTGTAGTTTAGTGTCTGTTTTGGGTCGGGGAAACATTTCATTACCTGT
GTCAATCAAGCGCCGAGCCCATTTTTCTGCTCTTGCGACATGAAAACCGC
AACACGACTTGCAGGTCACACAATTATGTGCGTGTTTGTTTTGGTCCCAT
CTATAGAACCACAGGTATTTTTTTCTAACTTACCTCCGGCGGTGCTGCCT
TCAGTGTTTACGGCGAGCAGAGTTTCAGCACTCTCTCCTACGGAGTACTA
TTTCACGCTTCTGTTGTAAATAGATCGCGAGGTAATCCTTCCGGAGACTT
TCGAACCACAACCTACAGCAGTAGCATCATGAGCTGCAAGGTTACCAAGT
GAACCACCGGGACGATGGATGTTGCTATCAAGCGTCGCAACGGCTACAAT
GATTAAAACCTCCCTGCTTGGTGTTGAGTGGTTGAGTTCCGCTTGCCGAG
CCTTCAAGCGATGGAAATTCCTGAAAGAGCCGCAGCAGCATGTATTTGAT
TCTGTTGTGAAATAAATACACCCTCGAGGTATCTCGCGGTCTTTCCGAGC
TGGACGTGGATGCTTACCTCTTTGTGTCTGCGTGTGGGTCGGTGGCGTCG
TATCTCCTTCCTCTCCTGCGTTGTATGACAGCAATTTGTTCAAGAAGTTC
TTCACCAAGACAAAGAATGGCCTCGGCAAAGTGCGGAAGTCGCTTGCTGT
TAAGAAGGACAAGGCGGTAGACGAGGAGGTGAGACTGTTTCTTGTGTGGT
ATGCCAAACGTGTCACAATTCAATTTCTCGACAAGAGCACAAAACTCGCA
TCATGCTCGTTTTCGCATCACCGTAGTAGGAGAGGGCATGCCCACATGCC
AAGCGCAGGAGTTGGAGAACGTGACAATACATCAAAGGGAGGGGGCTATC
CCGAAAAGTAAAATAGAAAATAGATGCATATGAAATGGTCGAGTTTGATA
CTCAAGGCATGAGCGTAAACCTATCACCATACTGTAAGACCGAACGGTTG
GTGCAGAGAATGATGAATGCACGGGGGGTAGATGAGCCAGACTCAGCGAC
GTGGATTGTACAAGCGTAAAGATCGCCCGACTGTTGATGGTACTGCTGTA
CCTCAATTCGGAATTGGATGCTTGGGACCGCAGTCGTGAAATAGAGCGTG
GGTGGTGGTCAGATTGGAACACATGTACTTCCTGAAATGTTTTTTTTTGC
CCGGTTTCCCCAATAATCTACTTCGTTAATCATTTTTTGGGGCCCGTTGG
ATCAGCGATCGATAGCATGTGGAAGTTTACCGGTACTCCACGACCCCCGC
TCTGTTTCGCCACGCCCCTATTACGCTTCTTAAGGACCCGCTAGGAGAAG
GGGTTGAGGCAGTGCTAGACGCCATCGACGAATTCGTGGCCGAGGGGGAG
AAAAACACCGGAAAAGCAGCGGAGGACGTAAAAAAAGTTGTCGACGAGAC
TAAGGAATCGGTGAAGAGTGCTATTTCAGCCTCCAAGGACAAGTTAAACG
AAGCGGGTGCCGACATCAAGTCGACGGTAGACGCAGCTGTCGAGGGTGCA
GCAGCGGATATGGAGGCGGTCAGAGGGTCTCTTCAGGACGGCATCAAGAA
TGTCGGAGATCAAGTCACCGAAGCCGCTAGGGAGGCCGCGGAATCTGCTG
CGGCAGCGTCTAAACAGGCGCAAGAGGACGCTGAAGAGACCGCCGAGAAG
GCGTCCACGGCTGCGGGAGAGTTGTGATTTGATGGGAGAGCCGTGGACTC
CCGTCCTTGTCAATGGAACCTGAGCTATTCGAAGAATAGCAAGGACTGTT
GGTGACGTTGCAATATCAGGCGTTAGTGTGAGGAGTGCATTACGAAGAAT
TCGGTACTGCACCTCTTGTTGTCAGATGTTGTGCGTGATAAGTCCGGTTT
GGTGACGTCCGTTCAAGCACTTCTTGTGCGTTTGGCTTCCTGGCGTTGCA
GTCGTGATAGTGACTGCTAGTAGGGCAACAATCTGTGACCGTTGCTCTTT
CTCGCCGTGCTTCTCTTGCTGTTCAAAGTATTAGTTGTTTTATGCATATT
TTGGGTTTGGTTGAAAGTGCCGCTGACTACTTGTAGAAGACCCAGACATG
CTTGACTTGGAATTTTGAATTTTGTAATGTTAAAAAAGTACGTGCGATTG
GGGTGGTTTATAGGGAGATTAAGATGTGCCCCTCTATTTGGACGTTGCAC
TCAATTTTTTGTCTGTCGAGCGTCCGCCGCCAGGTTTTTGTGGGCGCTGT
CTGATGTTTATGTCTGGTACGGTTTATATCCCTTGTGTATGGAATCGGTT
GGCCTTAGTAGAGCAGGAGTGCCATACCGTTGTTTGAAAGTAGAATATCA
GGACGAATTCAACGTCCCTTTTGCTTTTCGCACATTGTGCCAATCCATCA
TGTCACGAGGGCTGCTTCTGCATAATGGCGCCAGTCCTTGCGGCCGTAGT
GTACTCCCCAAGACCACGACGATGATGTTTGTCATTGCAGCTTTCATTGT
CGGATTACTTAGTCAAGCAACGGTATGTGCAAGAGTTTACAAAGCATCAT
CCGCGAGTATGCACGGATGCACAGGAACGCGTACAAAAAGAATCGTGATT
TAGATAATACGACAACGAAGCGTTGCCATTCGAAGCTCGTCCCCGATATT
CGCACGTGGGCGGGGGGATTTGGAGTGGTTGCGAGAATGAAAACAAATCA
CTTGTAGAGAGAAAACATTTGTGGCACGCAGTTCGCTGATTGGCCAACGC
CCCCTGCGGCGGAATTTAAAAAGCGGCAAAAATTTAGGGCACGGTCGAAG
ATCCTTGGACGACGGGTGACGTCATCCACGGTGGATTCGAGGACAGCACC
CTGGGAGATCTTGGCAAAATCGCGTCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:11297..14773- >mRNA_E-siliculosus-1a_M_contig93.17324.1 ID=mRNA_E-siliculosus-1a_M_contig93.17324.1|Name=mRNA_E-siliculosus-1a_M_contig93.17324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:11297..14773- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGATCTCTTTGCTTCAACTCTGCCTCGGCTTCCTTGCTGTATGTTT
GGTGTTGGGCGAGCAAGTTGAGGAGGCACCGTCCAGATGAGGATCTCTTT
GCTTCAACTCTGCCTCGGCTTCCTTGCTGTATGTTTGGTGTTGGGCGAGC
AAGTTGAGGAGGCACCGTCCAGCAATTTGTTCAAGAAGTTCTTCACCAAG
ACAAAGAATGGCCTCGGCAAAGTGCGGAAGTCGCTTGCTGTTAAGAAGGA
CAAGGCGGTAGACGAGGAGCAATTTGTTCAAGAAGTTCTTCACCAAGACA
AAGAATGGCCTCGGCAAAGTGCGGAAGTCGCTTGCTGTTAAGAAGGACAA
GGCGGTAGACGAGGAGGACCCGCTAGGAGAAGGGGTTGAGGCAGTGCTAG
ACGCCATCGACGAATTCGTGGCCGAGGGGGAGAAAAACACCGGAAAAGCA
GCGGAGGACGTAAAAAAAGTTGTCGACGAGACTAAGGAATCGGTGAAGAG
TGCTATTTCAGCCTCCAAGGACAAGTTAAACGAAGCGGGTGCCGACATCA
AGTCGACGGTAGACGCAGCTGTCGAGGGTGCAGCAGCGGATATGGAGGCG
GTCAGAGGGTCTCTTCAGGACGGCATCAAGAATGTCGGAGATCAAGTCAC
CGAAGCCGCTAGGGAGGCCGCGGAATCTGCTGCGGCAGCGTCTAAACAGG
CGCAAGAGGACGCTGAAGAGACCGCCGAGAAGGCGTCCACGGCTGCGGGA
GAGTTGTGAGACCCGCTAGGAGAAGGGGTTGAGGCAGTGCTAGACGCCAT
CGACGAATTCGTGGCCGAGGGGGAGAAAAACACCGGAAAAGCAGCGGAGG
ACGTAAAAAAAGTTGTCGACGAGACTAAGGAATCGGTGAAGAGTGCTATT
TCAGCCTCCAAGGACAAGTTAAACGAAGCGGGTGCCGACATCAAGTCGAC
GGTAGACGCAGCTGTCGAGGGTGCAGCAGCGGATATGGAGGCGGTCAGAG
GGTCTCTTCAGGACGGCATCAAGAATGTCGGAGATCAAGTCACCGAAGCC
GCTAGGGAGGCCGCGGAATCTGCTGCGGCAGCGTCTAAACAGGCGCAAGA
GGACGCTGAAGAGACCGCCGAGAAGGCGTCCACGGCTGCGGGAGAGTTGT
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