mRNA_E-siliculosus-1a_M_contig91.17216.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17216.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17216.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 762 bits (1967), Expect = 3.410e-262
Identity = 459/505 (90.89%), Postives = 465/505 (92.08%), Query Frame = 1
Query:  985 SFRRPLDTETAVAAPASEEASSSVVVEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPVEELPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQRNVRDGQMRSRSLTELELERTAGANGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKERPXXXXXXXXXXSRSTQAHFR 2499
            S + PLDTET VAAPASEEAS  VVVEDG      XXXXXXXXXXXXXXX           PPVEELP+DTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKK+SKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDG ADVTSRTVVAVNIPA+STVESLTPFFSSCGVAELIRVIHKSK+AGTTKTDNRSS IQAP GPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQRNVRDGQMRSRSLTELELERTAGA+GGAS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   APTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKERP          SRSTQAHFR
Sbjct:   22 SAKMPLDTET-VAAPASEEASGPVVVEDGENGLAPXXXXXXXXXXXXXXXTSGKEDTAEVAPPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKMSKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDGRADVTSRTVVAVNIPAESTVESLTPFFSSCGVAELIRVIHKSKTAGTTKTDNRSSGIQAPAGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQRNVRDGQMRSRSLTELELERTAGASGGASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGAVGSGSRSTQAHFR 525          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.240e-43
Identity = 107/146 (73.29%), Postives = 109/146 (74.66%), Query Frame = 1
Query:  994 RPLDTETAVAAPASEEASSSVVVEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPVEELPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRK 1431
            RPL+TET VAAPASEE S  VV EDG                                PPVEELP+DTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRK
Sbjct: 1107 RPLNTET-VAAPASEEGSGPVVAEDGESGLAPPAAMASSAAVVSSDETNGKEDTSEA-PPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRK 1250          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: A0A2R6XE71_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XE71_MARPO)

HSP 1 Score: 140 bits (352), Expect = 5.770e-31
Identity = 80/192 (41.67%), Postives = 125/192 (65.10%), Query Frame = 1
Query: 1189 KDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAK-ATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSL 1761
            ++ KA +VKQVEFYFSD+NLPTD ++ K VK    +G+VP+ V+ SF K+K L K+   +A AL +S  LVV++   +VRR  P   PD D + +V SRTVVA N+P D ++ES+   F S G  +++R+     + G ++T   +++ ++ +  +  L+A  +F T+E+A +AV+ LTD ++WR GLRV L
Sbjct:  197 EELKAKIVKQVEFYFSDQNLPTDNYLMKFVKKD-PEGFVPIPVVASFRKIKNLVKNHGIVAAALRNSTLLVVSEDGKKVRRAQPL--PDVD-LEEVQSRTVVAENLPEDHSIESVEQLFGSVGNVKMVRICQPEAANGASQT---AAKFKSDMVVSNKLHALIEFETVEQAEKAVSALTDERNWRSGLRVRL 381          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: A0A5J4Y4J7_9CHLO (La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4J7_9CHLO)

HSP 1 Score: 135 bits (340), Expect = 8.770e-31
Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = 1
Query: 1192 DTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSL 1761
            D  A +VKQV FYFSD NLPTD F+ K+V+    +GWVP+++I SF ++K LSKDI+ IA ALE S  LVV+   RVRRK P    D+    +V  RT +  N+P  +T++SLT  FS+ G  +++R+   +    +       S   A +  +R L+A  +F   E+   AV +LTD  +WR GLR ++
Sbjct:   47 DLVAKIVKQVNFYFSDTNLPTDNFLLKEVRKT-PEGWVPIRLIASFKRMKSLSKDIKVIAAALETSTELVVS-GHRVRRKEPLPQVDE---TEVLYRTAIVDNLPDQATIDSLTGMFSAAGKVKMVRICQPNSGPRSIA----QSIPGADLAVSRQLHALIEFENQEQVAAAVKQLTDSNNWRSGLRAAI 227          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: D8QWC1_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QWC1_SELML)

HSP 1 Score: 132 bits (331), Expect = 2.220e-30
Identity = 77/194 (39.69%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 1183 LPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAK-ATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSL 1761
            L +DT+  +V+QVEFYFSD NLPTD ++ K +K    +G+VP+ +I SF K+K+L+K+  A+A AL  S  LVV++   +VRR  P    D D   ++  RTVVA N+P D +++SL   F + G  +++RV     SA +  +   +   +     +  L+A  ++ TLE+A +AV ELTD+++WR GL V L
Sbjct:   76 LSEDTRTQVVQQVEFYFSDANLPTDNYLMKFIKKD-PEGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADIDLD---EIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPG-SANSVNSAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 264          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: C1N3J9_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3J9_MICPC)

HSP 1 Score: 134 bits (338), Expect = 7.590e-30
Identity = 87/206 (42.23%), Postives = 116/206 (56.31%), Query Frame = 1
Query: 1168 PPVEELPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK----DIRAIALALEDSQALVVAKA-TRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADS-----TVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRV 1755
            P  + L  + K  +  QVEFYFSD NLPTDAF+ KKV+AGG +GWVPL VICSF ++K+L K     +    LA   S  LV   A T VRR  P   PD D + +V SRTV+A N P  +     T+E++   F+S G   ++RV H   +        +SS +     PN  ++A  +F T EEA+RAV  L + + WR GLRV
Sbjct:   68 PAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLKKRPHSVVCDVLAELGSALLVSDDAKTAVRRVAPL--PDVD-LEEVQSRTVLAENFPGVNAGEAPTIEAVRELFASAGEVLVVRVRHPGMTQPAGVAAAKSSGLDLIQTPNAHVHALVEFKTAEEALRAVTTLNNDRDWRNGLRV 270          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: A0A7R9TLI1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TLI1_MICPS)

HSP 1 Score: 134 bits (338), Expect = 1.040e-29
Identity = 87/206 (42.23%), Postives = 116/206 (56.31%), Query Frame = 1
Query: 1168 PPVEELPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSK----DIRAIALALEDSQALVVAKA-TRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADS-----TVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRV 1755
            P  + L  + K  +  QVEFYFSD NLPTDAF+ KKV+AGG +GWVPL VICSF ++K+L K     +    LA   S  LV   A T VRR  P   PD D + +V SRTV+A N P  +     T+E++   F+S G   ++RV H   +        +SS +     PN  ++A  +F T EEA+RAV  L + + WR GLRV
Sbjct:   47 PAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLKKRPHSVVCDVLAELGSALLVSDDAKTAVRRVAPL--PDVD-LEEVQSRTVLAENFPGVNAGEAPTIEAVRELFASAGEVLVVRVRHPGMTQPAGVAAAKSSGLDLIQTPNAHVHALVEFKTAEEALRAVTTLNNDRDWRNGLRV 249          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: A0A2K1LA96_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LA96_PHYPA)

HSP 1 Score: 134 bits (337), Expect = 8.130e-29
Identity = 79/194 (40.72%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 1183 LPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAK-ATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSL 1761
            L ++TKA +VKQVEFYFSD NLPTD ++ K VK   ++G+VP+ V+ SF K+K L K+   +A  L +S  LVV++   +VRR  P   P+ D + ++ +RTVVA N+P D ++ESL   F   G  +++R+     + G   T  +  +    V  +  L+A  ++ T+E A +AV ELTD ++WR GLRV L
Sbjct:  241 LTEETKAKIVKQVEFYFSDTNLPTDNYLMKFVKKD-SEGFVPIPVVASFRKIKNLVKNHGVLAATLRNSTQLVVSEDGKKVRRAHPL--PEVD-LEEIQARTVVAENLPEDHSIESLEQLFGKVGTVKMVRICSPEAANGANATGAKHPKTDMLV--SNKLHALVEYETVELAEKAVAELTDERNWRSGLRVRL 428          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: UPI000D1C965E (la-related protein 6C n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C965E)

HSP 1 Score: 133 bits (334), Expect = 8.590e-29
Identity = 78/194 (40.21%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 1183 LPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAK-ATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSAGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSL 1761
            L +DT+A +V+QVEFYFSD NLPTD ++ K +K    +G+VP+ +I SF K+K+L+K+  A+A AL  S  LVV++   +VRR  P    D D   ++  RTVVA N+P D +++SL   F + G  +++RV     SA +      +   +     +  L+A  ++ TLE+A +AV ELTD+++WR GL V L
Sbjct:  173 LSEDTRAQVVQQVEFYFSDANLPTDNYLMKFIKKD-PEGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADIDLD---EIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPG-SANSVNNAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 361          
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Match: C1E3K5_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E3K5_MICCC)

HSP 1 Score: 130 bits (328), Expect = 8.700e-29
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 1
Query: 1207 LVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKD---IRAIALAL-EDSQALVVAK-ATRVRRKTPFKFPDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKS--AGTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSL 1761
            +VKQVEFYFSD NLPTDAF+ KKV+A    G+VP+ V+C F ++K L K    I  +A  L + S+ALVV++   RVRR TP   PD D + DV +RTVVA N     T+ES+   FS+ G   ++RV H      AG TK     S +     P+  ++A  +F+T ++A RA   L D K WR GLRV L
Sbjct:   67 IVKQVEFYFSDANLPTDAFLMKKVRAD-PNGFVPIGVVCGFNRMKTLLKKHPPIETVAAILRQHSEALVVSEDGIRVRRATPL--PDID-LEDVQARTVVAENFKTQPTIESVRDLFSAAGDVAMVRVRHPGMQTPAGATKP----SGLDLIATPSNAVHALIEFNTRDDAARAAETLNDDKDWRNGLRVRL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTW6_ECTSI3.410e-26290.89HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JW40_9PHAE1.240e-4373.29HTH La-type RNA-binding domain-containing protein ... [more]
A0A2R6XE71_MARPO5.770e-3141.67Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A5J4Y4J7_9CHLO8.770e-3141.05La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608... [more]
D8QWC1_SELML2.220e-3039.69Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
C1N3J9_MICPC7.590e-3042.23Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7R9TLI1_MICPS1.040e-2942.23Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A2K1LA96_PHYPA8.130e-2940.72Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
UPI000D1C965E8.590e-2940.21la-related protein 6C n=2 Tax=Selaginella moellend... [more]
C1E3K5_MICCC8.700e-2944.79Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:355948..365089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1908
Model size3822
Exons11
Ec32 orthologEc-12_002800.1
Ec32 ortholog descriptionRNA-binding protein Lupus La
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03019,ko03021
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.JO
EggNOG OGsCOG5193@1,KOG1855@2759
EggNOG free text desc.RNA processing
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006417,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010712,GO:0010714,GO:0017022,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032965,GO:0032967,GO:0032991,GO:0034248,GO:0034250,GO:0035613,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1902415,GO:1902416,GO:1905214,GO:1905216,GO:1990825,GO:1990904,GO:2000112
KEGG koko:K15191,ko:K18733
Preferred nameLARP6
Seed eggNOG ortholog2880.D7FTW6
Seed ortholog evalue1.5e-219
Seed ortholog score769.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936445.8601065-UTR-E-siliculosus-1a_M_contig91:355947..3570151622936445.8601065-UTR-E-siliculosus-1a_M_contig91:355947..357015Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 355948..357015 -
1696251082.1976073-UTR-E-siliculosus-1a_M_contig91:355947..3570151696251082.1976073-UTR-E-siliculosus-1a_M_contig91:355947..357015Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 355948..357015 -
1622936446.0063696-UTR-E-siliculosus-1a_M_contig91:364243..3650891622936446.0063696-UTR-E-siliculosus-1a_M_contig91:364243..365089Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 364244..365089 -
1696251082.3432755-UTR-E-siliculosus-1a_M_contig91:364243..3650891696251082.3432755-UTR-E-siliculosus-1a_M_contig91:364243..365089Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig91 364244..365089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936445.873871-CDS-E-siliculosus-1a_M_contig91:357015..3572711622936445.873871-CDS-E-siliculosus-1a_M_contig91:357015..357271Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 357016..357271 -
1696251082.2116168-CDS-E-siliculosus-1a_M_contig91:357015..3572711696251082.2116168-CDS-E-siliculosus-1a_M_contig91:357015..357271Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 357016..357271 -
1622936445.8851943-CDS-E-siliculosus-1a_M_contig91:358429..3585991622936445.8851943-CDS-E-siliculosus-1a_M_contig91:358429..358599Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 358430..358599 -
1696251082.227076-CDS-E-siliculosus-1a_M_contig91:358429..3585991696251082.227076-CDS-E-siliculosus-1a_M_contig91:358429..358599Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 358430..358599 -
1622936445.895881-CDS-E-siliculosus-1a_M_contig91:358877..3590221622936445.895881-CDS-E-siliculosus-1a_M_contig91:358877..359022Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 358878..359022 -
1696251082.236486-CDS-E-siliculosus-1a_M_contig91:358877..3590221696251082.236486-CDS-E-siliculosus-1a_M_contig91:358877..359022Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 358878..359022 -
1622936445.9062357-CDS-E-siliculosus-1a_M_contig91:359423..3597621622936445.9062357-CDS-E-siliculosus-1a_M_contig91:359423..359762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 359424..359762 -
1696251082.2460852-CDS-E-siliculosus-1a_M_contig91:359423..3597621696251082.2460852-CDS-E-siliculosus-1a_M_contig91:359423..359762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 359424..359762 -
1622936445.917586-CDS-E-siliculosus-1a_M_contig91:360284..3604241622936445.917586-CDS-E-siliculosus-1a_M_contig91:360284..360424Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 360285..360424 -
1696251082.2563899-CDS-E-siliculosus-1a_M_contig91:360284..3604241696251082.2563899-CDS-E-siliculosus-1a_M_contig91:360284..360424Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 360285..360424 -
1622936445.9312215-CDS-E-siliculosus-1a_M_contig91:360939..3610271622936445.9312215-CDS-E-siliculosus-1a_M_contig91:360939..361027Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 360940..361027 -
1696251082.266835-CDS-E-siliculosus-1a_M_contig91:360939..3610271696251082.266835-CDS-E-siliculosus-1a_M_contig91:360939..361027Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 360940..361027 -
1622936445.9437792-CDS-E-siliculosus-1a_M_contig91:361459..3615841622936445.9437792-CDS-E-siliculosus-1a_M_contig91:361459..361584Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 361460..361584 -
1696251082.2768607-CDS-E-siliculosus-1a_M_contig91:361459..3615841696251082.2768607-CDS-E-siliculosus-1a_M_contig91:361459..361584Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 361460..361584 -
1622936445.9588554-CDS-E-siliculosus-1a_M_contig91:362091..3621511622936445.9588554-CDS-E-siliculosus-1a_M_contig91:362091..362151Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 362092..362151 -
1696251082.2870872-CDS-E-siliculosus-1a_M_contig91:362091..3621511696251082.2870872-CDS-E-siliculosus-1a_M_contig91:362091..362151Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 362092..362151 -
1622936445.970106-CDS-E-siliculosus-1a_M_contig91:362464..3625981622936445.970106-CDS-E-siliculosus-1a_M_contig91:362464..362598Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 362465..362598 -
1696251082.3097153-CDS-E-siliculosus-1a_M_contig91:362464..3625981696251082.3097153-CDS-E-siliculosus-1a_M_contig91:362464..362598Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 362465..362598 -
1622936445.9798844-CDS-E-siliculosus-1a_M_contig91:363380..3635151622936445.9798844-CDS-E-siliculosus-1a_M_contig91:363380..363515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 363381..363515 -
1696251082.3220503-CDS-E-siliculosus-1a_M_contig91:363380..3635151696251082.3220503-CDS-E-siliculosus-1a_M_contig91:363380..363515Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 363381..363515 -
1622936445.9942713-CDS-E-siliculosus-1a_M_contig91:363927..3642431622936445.9942713-CDS-E-siliculosus-1a_M_contig91:363927..364243Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 363928..364243 -
1696251082.3329678-CDS-E-siliculosus-1a_M_contig91:363927..3642431696251082.3329678-CDS-E-siliculosus-1a_M_contig91:363927..364243Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 363928..364243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17216.1prot_E-siliculosus-1a_M_contig91.17216.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 357016..364243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17216.1

>prot_E-siliculosus-1a_M_contig91.17216.1 ID=prot_E-siliculosus-1a_M_contig91.17216.1|Name=mRNA_E-siliculosus-1a_M_contig91.17216.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=636bp
MPAVLRLETYSCRSRVVVGKHDLNLSARRCLQLLRPELLSETHEPASFRR
PLDTETAVAAPASEEASSSVVVEDGENGLASPAAVASSAAVVSSDETSGK
EDTAEVAPPVEELPKDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQ
GWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRKTPFKF
PDKDGMADVTSRTVVAVNIPADSTVESLTPFFSSCGVAELIRVIHKSKSA
GTTKTDNRSSEIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGG
LRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQRNVRDG
QMRSRSLTELELERTAGANGGASSRGGGKPRNSRENQHHHEHEASREDGG
SSGDGGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAG
DGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQ
PLQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGGVGSGSRSTQAHF
RMAVGPEEGKSGFAAGRGRPIVVAESSPNEVLRRPRGSSMGGVDSKVFVP
SAAASVAAEAAAAAATAAAAVAVAAPSTQQFEDAD*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig91:355948..365089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17216.1 ID=mRNA_E-siliculosus-1a_M_contig91.17216.1|Name=mRNA_E-siliculosus-1a_M_contig91.17216.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9142bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:355948..365089- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGTCATGGACGTGGGAGCTGATACCGCCGTCGTGGTACCCCCCTCTCCG GAGCCGGTGGTGGCCTCTTCAACGAAGATGTGAGTGACCACTGCTGTTTA TCACTCCCGGTCGTTTCGACAACAACACACGAACCTCTCTTGTGGATCTC TAGTCTGCCAGACGTGCTTCGCGTTTTGGTCCGCGGACCGAGGTGTTCCC AAGCCCCATCGCGAGTGTGGATATGGCGGCTCTCGTGCCATGCTCAGGCA CAATCTCCGTGGCATCTCACTCCGCGTGGGCTGTATGGATGGGTCGTATC GGCCCTGCTGGTTTGGCGAGAGTGTGTACAAATAAACACCATTCCACAGG CCTGCCAACGAATATGTGCTACACAACCATGTACACTTTGACGAGAGCGC GGAGGGACGAGAGGGATGGTGTATCGTGTATGAGATGTTCACCAACGACG ACGATGAGCTGCACATCTGCGACAGCAAGCTGTTTGTGCTCTGACCAAGA TAGGTTACCTCTGCTGCTGTACAACGCGAAATCCCTCGGGCGCACTCTCC ACTTCATAGTAGTCGTGTCTCACCCATTTTTTTTCTTTGTTCTGATATAT ACATTATAATGGTTGTATCGTCAGCTGTCAAGCACGCAGCGGTCGAAGGG ACCGCAGGCAGAGGTAGTGGACACCAAGTCATATTTGTGTGACCTGAGAT GCTCCGTGGTTCATGGTATCTCATGTCGAACGGTGCGAAGCTGCCAATGG ACGTGTAGTAGTACCGGAATTGTCCAGGTGGTAATTCTACCTCTGTACGA TGAACCGAAGTTTTTGAAGATTGGGTTCACCCCTGCTACGTACTACATGC CAGCAGTACTAAGACTCGAGACCTACAGCTGTAGGTCTCGAGTCGTTGTG GGGAAACATGATCTCAACCTCTCGGCGCGTCGCTGCTTGCAGTTACTCCG TCCTGAACTATTGTCGGAGACACACGAACCTGCTTCTTTTCGCAGGCCCC TGGACACGGAGACTGCTGTGGCTGCTCCGGCATCCGAGGAGGCGTCGTCG TCCGTTGTCGTTGAAGACGGGGAGAATGGTCTGGCGTCCCCGGCGGCCGT GGCCTCCTCTGCCGCGGTAGTGAGCTCCGACGAAACGAGCGGGAAAGAGG ATACTGCTGAAGGTTTGGAAAGACGGTGCTGCTGCTGTCTGTACCGCTGT CGACAGAGCGTCTAACGGCCTCGTATGCATATATAGATAACGTATCCCAA CAAGTCTTTTTTGCCCTTCGCACAATGGTGATGGCTCCCCAGACTTTTGG GTCGATTGACAGGCTGTTCGGGTCGTCGGGCACCTCCCCACCAAATAGTT TGCATATGAATCACTACTTGCACCGTGTCGTGTTCGTCTCTTTGTGCTTG TGCGCGGTTTTGCAAAGTTGGTGGTGGTGCCGTTGGTTTCCGCCCCCCTC CAGTTGTACTTTCCGGGTGCTACAACCCCCAGGCCCTCCCACGACGTATC GCGCTTCCCTCTCTGACTGTCTCTACCTTGCGTATCTTTGCACGCCCTAT CTTGTACAACTCTCCCCCCAACAGTAGCACCGCCTGTGGAAGAACTGCCC AAGGATACAAAGGCAGCCCTGGTGAAGCAGGTGGAGTTTTACTTCAGCGA CGAGAACCTGCCCACGGACGCCTTCATGAAGAAAAAAGTTAAGGCCGGCG GGGCGCAAGGTAAGAACGTTGTCTACGTAGATGTCGGTCGCGGTGCGCCT CGCACGTTCAGGCTTGATTACCTCTTGTCCGCCTCATATTTTGTATGGCG GAAGAGGTGCTGCTGAGGCTTGTGGGAAAGCGTGTCCATGACAGAATTGT ACAGCAGTTGTGGCAAAGGGTTCGGGTTCGATGGAAGCTCGCTGTGGTGG GTAAATCTGATGTAGACCCACGTGCCAGGGCAGGTGCTATCACGGGTCCT GTACGTTGCGGTTCAGCAGTAGTATCGCTGCGATGGTTCATGGTTTGGGG ACTGCAAAAAGAGGCTCCGTAGCGAAAACCAACCGTGTCGTTGGCTACTT TGCTCCCGCTAGGGTCCCCACTAAGTGAGCTCGTCGCCGACGCCTTCCCG CCCCCAGCAAAACCTAAGAGACTCGAACCCCGAGTCTGTAGCCATCACGG GCATTCTGAGTCGCCTTCAGTGTTCGGCAGATAACAGGAAGGCGTTTTTT CTATGTACCGTATCTCTCTCTAGCCGACTAGGAGACTCTCGACCCGGGAA AGTGGCCCACAAACCGTAGCGCCACACGGAAGACTTTTGTGGGGATTTTC CTTGCCACGCCGTCCGGTAGGAAGCGCTACTTAAATGTTACAGCAGTGCA GCAGTGCCGTCGCTTTCGCCCCTTTGGGCCCGGGCTACGTTCTTGCTTGG CACACCAAGAAGAGATTTCGAAGCTATAGCTTCTCCGCCCCTCCTCCTCA ACTACTCGCTTTTTGGTTCTTGGCCTGGCGGGATAACACAGGCTGGGTGC CGCTCAAGGTGATCTGTAGCTTCCCGAAGGTGAAGAAGCTGTCGAAGGAC ATTCGCGCGATTGCTCTAGCCCTGGAGGACTCCCAGGCTCTGGTGGTGGC TAAGGCGACCCGCGTAAGGCGTAAGGTATGACTGCATCGTGGGGCAGCGA GGCGGGCGACAAGATGGAGTTTACTACCGTGGCTGCACTGCTGACTTTTG TCTTGCTAACCATTTGTGATTTTTCGCGCTTGCTGAGGAACCCCGGCTTT CTTCCTCGTCGTTATCAGCTGTGTGGCGTTAGAATGTCGTTCTGGTTCTC GAGCCAGGGTTTCCAGTGTTGAACTGCTGCTAATCCATGCACGGAACAGG TTTTGCCGAGAGAGGCGGTTCTCAACCGTTTTTTTTTTTTTCGGTTTCGA CTACAAATATGTACCCGTGTGTCGTCCTCCTCCCGCAGACGCCTTTCAAG TTTCCGGACAAGGACGGGATGGCTGACGTCACCTCCCGTACAGTTGTGGT GAGAGACACAGCAAGACAAGAGAGGGGGGAGGGGGGGAGGGGGTTGCCGA CAAACTCAAGGGTCGTCCAAACAGCAGGGCGTTTATCCCCAATCGTACCA CGTCGTTTCCAAGAGTGGCATGCATTCACCTTACTCGACACGACGTACTG TAACACACCTCGGGGATGACCTTTTGGCTGTTTTTGAAACTATCACCGGG TGCTGCATGGTGCAGGGGGTGTCGTATCTCGTTTGGGTGTGATATCTTCC GTAGGTTGCTTGTGCGTTGTTAGAGTCCAACGTCAGAACAACAGCGGCGG TCCTTTCTGCAGGCCCAGGGAGGACTCGGAATGGCCCCTATCCGACGTGC TTGGTCGCTGTTGTAGTCTTCGGGCGGAAAGGGCGTGGGTGCATCTCTGC GCGCTGTCGGGGTCTTTCTTCATCTGGGTGCTGGGTGCTCGTTTGCGCCC TCGTCATGCACGCGTTGAACCCCACCTTGCCGCGCACGCCTTCGCGACAT GACAGGCCGTGAATATTCCCGCGGATTCGACGGTGGAGTCCCTGACGCCT TTCTTTTCGTCCTGTGGGGTGGCGGAGCTGATCCGCGTGATCCACAAGAG CAAGTCGGCGGGGACGACCAAGACTGACAAGTGAGACATCAGAGGACGGC AGGGTTGGCGCAGGACTTGCCGGCCACTGTAGTCATTGCCCAGACGCCTT CGTGACGACTCCTCCCTCTTTTTGTCGTGCCCTTGGTGGTTGGTGGGTAG CAGTAATGATGGGATGCGGTTTTTTCGCTCGTAGCCAGACCAGGTCGACT TCGCACTGCTGTCGCCATTTTTTTTTTTCCCGGCACTCCACGCTTTTTTT GAGTCTTAGAAGTGGATGCTCCTGGTGCGCTATCGTATTGCTGATGAGCG TGTTTTCGTGCACGACACAAGCCTCTAGAACAAGTTGTATCCGTGTTCTC GCAAGACTGTTTTAATTTCCGCCGCGTTTTCTTGACCATTGCTCTGTACT CCCCCCGCCTTTCTCGCTATCTCTCTCTCGCACACACTTTCGCCTTCTCT CTCGCACTACAGTAGGAGCTCAGAAATTCAGGCGCCGGTGGGACCAAACC GAGATCTATACGCGACTTGCCAATTCTCCACCCTGGAAGAGGCCATCAGG GTGAGATGGATTGCTACACTTTTTTTGTAGTGTTGCGGTTTTGTGGTTGG TCCTCTCACGTCCCTTTTTTGGTCTTGATAACCTAGCCCGCGATGATGCG CGAGCCAGGCGAAACACCGTGTACGTGTAGGTAGCGGAGGCGATAGGTAG CACCGGGAGTCACGTGACTTGGCATCCGCAACAACATAAGCGGCATGTGG AGATGTCCTTGGATCCGAGCAGCATGTGCCATGTCGACGACGATGCCCTA TTCCCACACATATATCACGAACAACAGTTCCCACCTGAGATACGGCTGCT GTGACGCCTTCTTCAACTAGCAAAGCCTTCTATCCTTGTCTAATCTGAAA GTTTGGAGTGTCCTCTCGTGCATAAGCGCAACGGGTCGCATGTGATGTGT CGAGTTGTCTCTCGCGCGACAGGCAATGGCGTCGGTATGTGTTCGGCCTT GAATGCACGCGCTTCTCTTGCCTGCGTCCCCTCGTCTTCCCTTCCCCTCA TCGCGACCCGGGAAGGCTGTGAACGAGCTTACCGATAGGAAAAGTTGGCG GGGGGGGTTGCGGGTGTCGCTGGCGAACGGAGTGACGGTGGAAAAGGCCC TGGCTAAGCTGAAGGCGGCGTCCAACAAGAAGGCCAAGCAGGAACAGAAG CAAAGGTGGGGCTGTATTTCTGTCCGGTGTGGCTTGTGCATGCGAGCGCG ATGCGCGGGGGTGAAGTTGTTACTAGACAGGCGCGCCCGGCGATGGGGGG GGGGGGGTGACAGTCCTTGGCGCGTCTTAAATGGGCAGAATGTTCTTCTT TCAGGCGTAATGCCGAGTGGAAGATGGGGAGAATTTACTGAAATCGCTGG GGTTTCCACCGAGAGCCTGTGATAAAAGGCTTAACGTTATTGGTTTACCA CTCGAAACTTGGGATTTGGCGCGTTCAACTATGTGGCCATCAAGCTGCTG GTTGCCGCTGATTTGGCCTTTGACACCCCCCGCCTGCGCCCTGTTGTGAC AAGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGT ACCCCCCCCTGCCTGCGAGGTCAATGGTCTAACGACTACGGCATGCACGA CTATGAGTACACCCCCCCCTGCCTGCGCCCTGTTGTGATGACTTGCCTTT CATTTGGCCACGTCAATGTTATTGAAGAGTAAACTCGAGATCGCCCGTCG ACCGCGGCCAAAGGAATGTCCGCGACGGGCAGATGCGCTCCCGCTCCCTG ACGGAGCTGGAGCTAGAGAGAACCGCGGGTGCGAATGGCGGGGCAAGCAG CCGGGGCGGAGGGAAACCTCGGAACTCCCGGGAGAACCAGCACCATCATG AACATGAAGCCTCACGAGAAGATGGGGGTAGCAGCGGGGACGGGGGGGAA GCGGCTCCGACGACGCGCAAGCCTCGGTCCGTGTCGAACGTGGACGCCCT TTTCAGCAGCAGCACCGGCGGGAGCGGCGGAGGGATTGAGAACGGATCCC CACCCCGCCATACCATGTGCGTTGCGCTGTATGTCTGTTGTAGGTTTTTT GTTTCATGTGCGAGTGGGGCGGCTTGGCGAGATGCTTGGTGCGGGACGGC ATTGAGGGTGTGTCTTGTCACAGAGAAAGGCGACCTGGAATCGCAACCGG AACTGTAGGGTGGGATATTTGGGTGTGCCTCGTGTCTGTCTGCGGCCACT TCGAAACCTGGAAGTCGGGAATGGAACACCGCAGAACAACCACGGTTGCG CCGATAGGACCGAAAATGCCGATGGCAATGACAGAAACCGTGACCGCGAG GGTCACAGGGCGTTTCCCGGACAACGAATGGTCTCGGGCGTCGGCCAATG TCAGGCGGGGTATGAGTTCGTGTCGTTTGTTGACCTGTTGTCTGTTGTCT CGTTTCCCGCTCCGAAGGGGCAGCGCTGGTGATGGCCTCCCGCGGAAGGG CGTGGTGCAGACGCTGTCCTCGGAGGGATGGTCGTGGATCAAGAAGGACG GCCAAGGTTCTCGCAAGAGCGGCAACCGCATCCCCTTCGTGATGGGGGAT GTAGTGATGAAGGTAATGGCGTCTTGCCATGTTTTTCGTGTGGAGGAGGG GGGAGTAGGTGATGCATGGAAGAACGGCGGGTAGTATCGCGGTGGCTCTC TGCCCCGTTTGCGCTAGCAGTTATTCCAACTTGATCGGGACATCTTAGTA CATCGTGGATACATCGTAGGCATACCAAAGCGACGGGGGTTTCGGCGCGT CAATCGAGGGAGACTACCCCAGCAATGCCGTACTCCGGTGCCGCGGATGC CAACATGCCCCCCACGACACACACAAACGGCAATTAACAGGATGGAGAGC AGCGGCAGCCCTTGCAAAAGGGCGACCACGTGGAGTACCGCGTCTGGAAA GACACGGAGGGCAGGTCGATGGCCGTAAGAGTCGAGCGGGCCAAGGAGAG ACCGCGGCCGGCTGGAGGCGGGGTGGGCAGTGGCAGCCGGTCCACTCAGG CACATTTTCGGTGAGTGCAGCCATCGAGGGTGCGCAGAGAGAGGGGGGGG TTGGTTGCGTTGCCAGAAGGGGGGGCCTAAGGTTGGGGGCCAGGCAACCC TACCCGTCTCTTGATGTGGAAGCGGCTCATGTGTGTCTGTTCGTGTATTC CCAGCAGGTAAGGCACTGGCACGAGGTTAAGGACTCGTGGGTATAGACCA ACGAGCCCTTGCCAACACTCGATTTCGTTGGCCTTGACCGTGTTGCCGAT TTTGGGGTGTACCAGCACGTGCTCAAGCGACGTCCTCCTTTCGCGCGAAA AACAGTGCCACAACCACACCCATACGAACATGTGGTAGGCTGGTTGATGG AACACACCACGGCACCGTGCGGGGGTACAGCAGTAGTGCAGGGAATGCGG TCTTGGATGGGCTGAAGAATCTTGCATGCCACTTTGGTGTTCTTGTTGAC GGGCCCAAGGAAGGAGGTGGGCGTGGCCGTCAGAAAGACGGGCGGCTGCA AATCTCTTGGGTTCGCGAGGAACCGTGTCTCGTTTCAGCTCGTGGGTGTT TCTGCAGACGTAGCACTGCTGTTGTGTGTGTGTGTGTTTTTTTTTCTTGT CGTGTTGCGCTCGCATCTGAACCGTGGCTCTACCTCCATGGTTTCGGTTC AGTTGTTCGTTTGTGTGCGGGTAATGACAGTGGAGTTTTTTTTTCCTCAT CTGAAGGTGGCGGTATTAGTAGTAGTATTGGCCAATGCGGGGGCAGCAGC AGCAGCAGCAGCACTGACAAGGACTATCATAATGGCAGGATGCAGCCCAA CGCGACAACCGAGCATGAAGAGTGCGATGCCATCCTGCAACGAGCTTCGT CGCGATTCCAAGCACTGTTTTTTTTTTTTTTGCTGCTGGGCTGTGATAGT GTAAGAACTAGCTTTTGTTTCCCCGCCACCATAAGAAATTGTCGGTTACG TTACTCAACTGATTTTTATTTGCATCCACGAAGGTCGAAGATAATCGCTG CTGGTATGCACACAAGTTTGTCGCGATGAAGTCGACAACAACCGACAGAA GTGACATACAGCGATCCGTACGTATGATCAGTGGACCGTCATCATGACAC CAACGTTTTCTACCCCCCCTACCCCCGAAATCGCTTTGTTCCACGTATCA CGCTGCCGGGCAACACAGGATGGCCGTCGGTCCGGAGGAAGGCAAGAGCG GCTTCGCGGCCGGGAGAGGGCGACCCATTGTGGTTGCCGAGTCTTCGCCC AATGAGGTTCTGCGCCGGCCGCGGGGCTCCAGCATGGGCGGTGTGGACAG TAAGGTGTTCGTACCATCGGCGGCGGCCTCGGTAGCAGCAGAAGCAGCAG CGGCGGCTGCTACTGCGGCGGCGGCGGTGGCGGTGGCAGCGCCTTCGACG CAGCAGTTCGAGGATGCCGATTGAGTACGCGGCGGTTTTCCTGCTTACAA GAACATGAAACTGCTTTTTTTAACGCTAGGCGAAACACTTATGTAGCATG AAAATTTGAAAAGTGCCGTTGAACAATACCATCCGCACTGTACCATGAAT GCAGCTTGAGGCGGGGAAATGTGTGCTTAATAGTCTAGACGGTACCTGAT GCGCCGCAGGCTTCTTGTTTGCGGCCAAGGTTTCGATGTCGCTTGGTGTC TATGCTCGTTTGCTTTGGTTTGGTTTTGGTTGTTCGTGTTGAAGTCTGGT GGGAGAGATTGAAGGCTGGTTGGTTGTGTTTGAGACAAGGAGGACGGGTG CGATCGGAAGTTGTTTGCGAAGTTGGTTTGTGGCGCGGCCATGGTTCGGG CCGTTTTTTTTCCGTGTGTTCGTGTGAGTGTTTTGGCTTGTCGGTGCTGG TGTGCTGGTACGTCGCGCATTTGGTGAATGTGCGCAAGAAGAGAGCAAAG CGCCACACGCGCTTTTCGTCTCGCCTTCCTCATTTCTACAAGCCCACGGT TGTTTTCATCCGGCTGTGTTGCGAGACTGCAACACGAGATCAGATTTGAG GATTCCCGGGAGGACTTGACCGTTAATGTTTCTCGTGATGGGTATGCTGC CGTGAAAAATCTCAAGGTTGCACGGGGCGGTTCCTGTTGTTAGTGTTCTT CTCTTTCAATAACCCTGAGTCTTGATTTATTGTGAGGGTATTGCTCGTGA GCAGGCCGGCATACATTCCTGATATATAGTCTCGTGCTTGTTGTGCGATA GATTCTAGCAAGTCCGTGTGATATTGTCTGATGTTTATTCAAGTGACAGC CAATGATTTTCGGCCTCACCAGAACCCAGTCAATGAACATGCCGTGCTTT TCAGGGTCATGATCCTGCATCAGACGATCGGACGCGCAGGGAAACTCGCT CGCGCGAGGTCCAAAATCCGACACCATGGAACCTATCGATCTAGCCCCCT CGGACTCCTCCACGTCGTTTCTGAAGAAGACACAGAGGGTACGCTGCCAT CTTCCCGGTACAAAACGTTGGGCGCGAGATCGAGCTCGGGCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:355948..365089-

>mRNA_E-siliculosus-1a_M_contig91.17216.1 ID=mRNA_E-siliculosus-1a_M_contig91.17216.1|Name=mRNA_E-siliculosus-1a_M_contig91.17216.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3816bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:355948..365089- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCAGCAGTACTAAGACTCGAGACCTACAGCTGTAGGTCTCGAGTCGT
TGTGGGGAAACATGATCTCAACCTCTCGGCGCGTCGCTGCTTGCAGTTAC
TCCGTCCTGAACTATTGTCGGAGACACACGAACCTGCTTCTTTTCGCAGG
CCCCTGGACACGGAGACTGCTGTGGCTGCTCCGGCATCCGAGGAGGCGTC
GTCGTCCGTTGTCGTTGAAGACGGGGAGAATGGTCTGGCGTCCCCGGCGG
CCGTGGCCTCCTCTGCCGCGGTAGTGAGCTCCGACGAAACGAGCGGGAAA
GAGGATACTGCTGAAGATGCCAGCAGTACTAAGACTCGAGACCTACAGCT
GTAGGTCTCGAGTCGTTGTGGGGAAACATGATCTCAACCTCTCGGCGCGT
CGCTGCTTGCAGTTACTCCGTCCTGAACTATTGTCGGAGACACACGAACC
TGCTTCTTTTCGCAGGCCCCTGGACACGGAGACTGCTGTGGCTGCTCCGG
CATCCGAGGAGGCGTCGTCGTCCGTTGTCGTTGAAGACGGGGAGAATGGT
CTGGCGTCCCCGGCGGCCGTGGCCTCCTCTGCCGCGGTAGTGAGCTCCGA
CGAAACGAGCGGGAAAGAGGATACTGCTGAAGTAGCACCGCCTGTGGAAG
AACTGCCCAAGGATACAAAGGCAGCCCTGGTGAAGCAGGTGGAGTTTTAC
TTCAGCGACGAGAACCTGCCCACGGACGCCTTCATGAAGAAAAAAGTTAA
GGCCGGCGGGGCGCAAGTAGCACCGCCTGTGGAAGAACTGCCCAAGGATA
CAAAGGCAGCCCTGGTGAAGCAGGTGGAGTTTTACTTCAGCGACGAGAAC
CTGCCCACGGACGCCTTCATGAAGAAAAAAGTTAAGGCCGGCGGGGCGCA
AGGCTGGGTGCCGCTCAAGGTGATCTGTAGCTTCCCGAAGGTGAAGAAGC
TGTCGAAGGACATTCGCGCGATTGCTCTAGCCCTGGAGGACTCCCAGGCT
CTGGTGGTGGCTAAGGCGACCCGCGTAAGGCGTAAGGCTGGGTGCCGCTC
AAGGTGATCTGTAGCTTCCCGAAGGTGAAGAAGCTGTCGAAGGACATTCG
CGCGATTGCTCTAGCCCTGGAGGACTCCCAGGCTCTGGTGGTGGCTAAGG
CGACCCGCGTAAGGCGTAAGACGCCTTTCAAGTTTCCGGACAAGGACGGG
ATGGCTGACGTCACCTCCCGTACAGTTGTGACGCCTTTCAAGTTTCCGGA
CAAGGACGGGATGGCTGACGTCACCTCCCGTACAGTTGTGGCCGTGAATA
TTCCCGCGGATTCGACGGTGGAGTCCCTGACGCCTTTCTTTTCGTCCTGT
GGGGTGGCGGAGCTGATCCGCGTGATCCACAAGAGCAAGTCGGCGGGGAC
GACCAAGACTGACAAGCCGTGAATATTCCCGCGGATTCGACGGTGGAGTC
CCTGACGCCTTTCTTTTCGTCCTGTGGGGTGGCGGAGCTGATCCGCGTGA
TCCACAAGAGCAAGTCGGCGGGGACGACCAAGACTGACAATAGGAGCTCA
GAAATTCAGGCGCCGGTGGGACCAAACCGAGATCTATACGCGACTTGCCA
ATTCTCCACCCTGGAAGAGGCCATCAGGTAGGAGCTCAGAAATTCAGGCG
CCGGTGGGACCAAACCGAGATCTATACGCGACTTGCCAATTCTCCACCCT
GGAAGAGGCCATCAGGGCTGTGAACGAGCTTACCGATAGGAAAAGTTGGC
GGGGGGGGTTGCGGGTGTCGCTGGCGAACGGAGTGACGGTGGAAAAGGCC
CTGGCTAAGCTGAAGGCGGCGTCCAACAAGAAGGCCAAGCAGGAACAGAA
GCAAAGGCTGTGAACGAGCTTACCGATAGGAAAAGTTGGCGGGGGGGGTT
GCGGGTGTCGCTGGCGAACGGAGTGACGGTGGAAAAGGCCCTGGCTAAGC
TGAAGGCGGCGTCCAACAAGAAGGCCAAGCAGGAACAGAAGCAAAGAGTA
AACTCGAGATCGCCCGTCGACCGCGGCCAAAGGAATGTCCGCGACGGGCA
GATGCGCTCCCGCTCCCTGACGGAGCTGGAGCTAGAGAGAACCGCGGGTG
CGAATGGCGGGGCAAGCAGCCGGGGCGGAGGGAAACCTCGGAACTCCCGG
GAGAACCAGCACCATCATGAACATGAAGCCTCACGAGAAGATGGGGGTAG
CAGCGGGGACGGGGGGGAAGCGGCTCCGACGACGCGCAAGCCTCGGTCCG
TGTCGAACGTGGACGCCCTTTTCAGCAGCAGCACCGGCGGGAGCGGCGGA
GGGATTGAGAACGGATCCCCACCCCGCCATACCATAGTAAACTCGAGATC
GCCCGTCGACCGCGGCCAAAGGAATGTCCGCGACGGGCAGATGCGCTCCC
GCTCCCTGACGGAGCTGGAGCTAGAGAGAACCGCGGGTGCGAATGGCGGG
GCAAGCAGCCGGGGCGGAGGGAAACCTCGGAACTCCCGGGAGAACCAGCA
CCATCATGAACATGAAGCCTCACGAGAAGATGGGGGTAGCAGCGGGGACG
GGGGGGAAGCGGCTCCGACGACGCGCAAGCCTCGGTCCGTGTCGAACGTG
GACGCCCTTTTCAGCAGCAGCACCGGCGGGAGCGGCGGAGGGATTGAGAA
CGGATCCCCACCCCGCCATACCATGGGCAGCGCTGGTGATGGCCTCCCGC
GGAAGGGCGTGGTGCAGACGCTGTCCTCGGAGGGATGGTCGTGGATCAAG
AAGGACGGCCAAGGTTCTCGCAAGAGCGGCAACCGCATCCCCTTCGTGAT
GGGGGATGTAGTGATGAAGGGGCAGCGCTGGTGATGGCCTCCCGCGGAAG
GGCGTGGTGCAGACGCTGTCCTCGGAGGGATGGTCGTGGATCAAGAAGGA
CGGCCAAGGTTCTCGCAAGAGCGGCAACCGCATCCCCTTCGTGATGGGGG
ATGTAGTGATGAAGGATGGAGAGCAGCGGCAGCCCTTGCAAAAGGGCGAC
CACGTGGAGTACCGCGTCTGGAAAGACACGGAGGGCAGGTCGATGGCCGT
AAGAGTCGAGCGGGCCAAGGAGAGACCGCGGCCGGCTGGAGGCGGGGTGG
GCAGTGGCAGCCGGTCCACTCAGGCACATTTTCGGATGGAGAGCAGCGGC
AGCCCTTGCAAAAGGGCGACCACGTGGAGTACCGCGTCTGGAAAGACACG
GAGGGCAGGTCGATGGCCGTAAGAGTCGAGCGGGCCAAGGAGAGACCGCG
GCCGGCTGGAGGCGGGGTGGGCAGTGGCAGCCGGTCCACTCAGGCACATT
TTCGGATGGCCGTCGGTCCGGAGGAAGGCAAGAGCGGCTTCGCGGCCGGG
AGAGGGCGACCCATTGTGGTTGCCGAGTCTTCGCCCAATGAGGTTCTGCG
CCGGCCGCGGGGCTCCAGCATGGGCGGTGTGGACAGTAAGGTGTTCGTAC
CATCGGCGGCGGCCTCGGTAGCAGCAGAAGCAGCAGCGGCGGCTGCTACT
GCGGCGGCGGCGGTGGCGGTGGCAGCGCCTTCGACGCAGCAGTTCGAGGA
TGCCGATTGAGATGGCCGTCGGTCCGGAGGAAGGCAAGAGCGGCTTCGCG
GCCGGGAGAGGGCGACCCATTGTGGTTGCCGAGTCTTCGCCCAATGAGGT
TCTGCGCCGGCCGCGGGGCTCCAGCATGGGCGGTGTGGACAGTAAGGTGT
TCGTACCATCGGCGGCGGCCTCGGTAGCAGCAGAAGCAGCAGCGGCGGCT
GCTACTGCGGCGGCGGCGGTGGCGGTGGCAGCGCCTTCGACGCAGCAGTT
CGAGGATGCCGATTGA
back to top