mRNA_E-siliculosus-1a_M_contig91.17201.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17201.1
Unique NamemRNA_E-siliculosus-1a_M_contig91.17201.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: D7FNV2_ECTSI (Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV2_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 9.910e-136
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 203
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: A0A836CKR4_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR4_9STRA)

HSP 1 Score: 344 bits (883), Expect = 5.800e-119
Identity = 173/198 (87.37%), Postives = 184/198 (92.93%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD++SF NVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAK FAD+LGIEFLETSAKNA+NV+ AFM M++ IK RMK+QPT   +GGT+LT S QVSG  + GGCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRDSFQNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKEFADSLGIEFLETSAKNATNVDSAFMTMSAAIKGRMKTQPTAGAKGGTKLTPSAQVSGGATSGGCC 203
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: A0A835YQS3_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS3_9STRA)

HSP 1 Score: 340 bits (872), Expect = 2.850e-117
Identity = 171/199 (85.93%), Postives = 183/199 (91.96%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGG-GCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELD KT+KLQIWDTAGQERFRTIT+SYYRGAHGIIVVYDVTD+ESFNNVKQWL EI+RYACENVNKLLVGNKSDLEAKRAVTTEE K FAD++GIEFLETSAKNA NVEKAF+MM+ QIK RMK+ P G  +GGTRLTA  QV G G+GG GCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKTVKLQIWDTAGQERFRTITASYYRGAHGIIVVYDVTDRESFNNVKQWLTEIERYACENVNKLLVGNKSDLEAKRAVTTEEGKEFADSIGIEFLETSAKNADNVEKAFLMMSQQIKGRMKTAPAGGAKGGTRLTAGEQVGGGGAGGSGCC 204
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: W7TST3_9STRA (Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TST3_9STRA)

HSP 1 Score: 333 bits (854), Expect = 1.520e-114
Identity = 169/198 (85.35%), Postives = 181/198 (91.41%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+ KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEI+RYA ENVNKLLVGNKSDLE KR V+TE AK FAD+LGI FLETSAKN++NVEKAF+ MASQIK+RMK+QP G   GGT+LTAST V G G+  GCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASSGCC 203
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 n=22 Tax=Oomycota TaxID=4762 RepID=YPT1_PHYIN)

HSP 1 Score: 322 bits (824), Expect = 5.290e-110
Identity = 167/198 (84.34%), Postives = 177/198 (89.39%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM + P  AP+ G +LT   QV   G G  CC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQVPSNG-GSKCC 201
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: K3W769_GLOUD (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=K3W769_GLOUD)

HSP 1 Score: 321 bits (822), Expect = 1.070e-109
Identity = 168/198 (84.85%), Postives = 177/198 (89.39%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+TE AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM + PT AP+   +L   T V   G GG CC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTEAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPT-APKPTLKLNQGTNVQQNG-GGKCC 201
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: A0A140YWP8_PHYNI (Ras-related protein (Fragment) n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A140YWP8_PHYNI)

HSP 1 Score: 320 bits (820), Expect = 1.740e-109
Identity = 162/188 (86.17%), Postives = 173/188 (92.02%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQV 564
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSA+NA+NVEKAFMMMA+QIK RM + P  AP+ G +LT   QV
Sbjct:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSARNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQV 187
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: A0A140YWQ0_PHYNI (Ras-related protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A140YWQ0_PHYNI)

HSP 1 Score: 319 bits (817), Expect = 5.000e-109
Identity = 162/188 (86.17%), Postives = 172/188 (91.49%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQV 564
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ A+ FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM + P  APR G +LT    V
Sbjct:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAQEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APRAGVKLTPGQHV 187
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: A0A6A3UIH2_9STRA (Ras-like GTP-binding protein n=90 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UIH2_9STRA)

HSP 1 Score: 321 bits (823), Expect = 8.450e-109
Identity = 163/188 (86.70%), Postives = 173/188 (92.02%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQV 564
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FA++LGIEFLETSAKNA+NVEKAFMMMA+QIK RM + P  AP+ G +LT   QV
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPV-APKAGVKLTPGQQV 192
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BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Match: A0A067C976_SAPPC (Ras-like GTP-binding protein YPT1 n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C976_SAPPC)

HSP 1 Score: 316 bits (809), Expect = 9.840e-108
Identity = 166/198 (83.84%), Postives = 174/198 (87.88%), Query Frame = 1 
Query:    1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 594
            DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEIDRYACENVNKLLVGNKSDL AKR V+T+ AK FAD+LGIEFLETSAKNA+NVEKAFMMMA+QIK RM S P  + +    L     VSG    GGCC
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKDFADSLGIEFLETSAKNAANVEKAFMMMAAQIKKRMASAPMQS-KPAISLQPGQNVSG--KSGGCC 200
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNV2_ECTSI9.910e-136100.00Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CKR4_9STRA5.800e-11987.37Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
A0A835YQS3_9STRA2.850e-11785.93Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
W7TST3_9STRA1.520e-11485.35Rab family gtpase n=2 Tax=Monodopsidaceae TaxID=42... [more]
YPT1_PHYIN5.290e-11084.34Ras-like GTP-binding protein YPT1 n=22 Tax=Oomycot... [more]
K3W769_GLOUD1.070e-10984.85Uncharacterized protein n=4 Tax=Oomycota TaxID=476... [more]
A0A140YWP8_PHYNI1.740e-10986.17Ras-related protein (Fragment) n=4 Tax=Peronospora... [more]
A0A140YWQ0_PHYNI5.000e-10986.17Ras-related protein (Fragment) n=4 Tax=Phytophthor... [more]
A0A6A3UIH2_9STRA8.450e-10986.70Ras-like GTP-binding protein n=90 Tax=Phytophthora... [more]
A0A067C976_SAPPC9.840e-10883.84Ras-like GTP-binding protein YPT1 n=11 Tax=Saprole... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:189968..193518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size597
Model size597
Exons5
Ec32 orthologEc-12_003250.1
Ec32 ortholog descriptionRab1B, RAB family GTPase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0084@1,KOG0084@2759
EggNOG free text desc.GTPase activity
KEGG Pathwayko05134,map05134
KEGG koko:K07874
Seed eggNOG ortholog2880.D7FNV2
Seed ortholog evalue5.8e-106
Seed ortholog score390.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17201.1prot_E-siliculosus-1a_M_contig91.17201.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig91 189968..193518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936441.083952-CDS-E-siliculosus-1a_M_contig91:189967..1901681622936441.083952-CDS-E-siliculosus-1a_M_contig91:189967..190168Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 189968..190168 -
1696251080.0986042-CDS-E-siliculosus-1a_M_contig91:189967..1901681696251080.0986042-CDS-E-siliculosus-1a_M_contig91:189967..190168Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 189968..190168 -
1622936441.1088803-CDS-E-siliculosus-1a_M_contig91:191035..1911231622936441.1088803-CDS-E-siliculosus-1a_M_contig91:191035..191123Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 191036..191123 -
1696251080.110359-CDS-E-siliculosus-1a_M_contig91:191035..1911231696251080.110359-CDS-E-siliculosus-1a_M_contig91:191035..191123Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 191036..191123 -
1622936441.1221313-CDS-E-siliculosus-1a_M_contig91:191922..1920621622936441.1221313-CDS-E-siliculosus-1a_M_contig91:191922..192062Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 191923..192062 -
1696251080.1201065-CDS-E-siliculosus-1a_M_contig91:191922..1920621696251080.1201065-CDS-E-siliculosus-1a_M_contig91:191922..192062Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 191923..192062 -
1622936441.1395745-CDS-E-siliculosus-1a_M_contig91:192568..1926161622936441.1395745-CDS-E-siliculosus-1a_M_contig91:192568..192616Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 192569..192616 -
1696251080.1297383-CDS-E-siliculosus-1a_M_contig91:192568..1926161696251080.1297383-CDS-E-siliculosus-1a_M_contig91:192568..192616Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 192569..192616 -
1622936441.1570508-CDS-E-siliculosus-1a_M_contig91:193398..1935181622936441.1570508-CDS-E-siliculosus-1a_M_contig91:193398..193518Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 193399..193518 -
1696251080.1460896-CDS-E-siliculosus-1a_M_contig91:193398..1935181696251080.1460896-CDS-E-siliculosus-1a_M_contig91:193398..193518Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig91 193399..193518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig91.17201.1

>prot_E-siliculosus-1a_M_contig91.17201.1 ID=prot_E-siliculosus-1a_M_contig91.17201.1|Name=mRNA_E-siliculosus-1a_M_contig91.17201.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=199bp
DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSK
TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHE
IDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNA
SNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC*
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mRNA from alignment at E-siliculosus-1a_M_contig91:189968..193518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig91.17201.1 ID=mRNA_E-siliculosus-1a_M_contig91.17201.1|Name=mRNA_E-siliculosus-1a_M_contig91.17201.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3551bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:189968..193518- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GATTACCTGTTTAAGCTGCTGTTGATCGGAGACTCGGGCGTGGGAAAGTC
GTGTCTGCTGTTGCGGTTTGCGGACGACACCTACACGGAGAGTTACATCT
CTACCATCGGGGTGGACTTTGTGAGTGGTTGCTGAGGCGTTTGGCGTCCG
CGCGTGTGTGCTTGGATGACTGAGTGTAGCGCTTCACCAATGGAATGGAA
GGGCGTGAGTCGGGCAGGCATGCGCACGTGTTTGTTCGATTGTCGTCGAC
CGCGCTCACCGACTGGCCAGCGATAGAGGGCGGCAGATTTGGCCACACCA
CAAATAGGAGAATGTTTTCGATTTCACGGGCCCCCCTGCGAGGGGTGCCG
CGGGGGAGACTGGGCACATTGGCGCCGGCTTCCAAGATTCAGAACGGCTG
TTCTTGTACAGAAGACGACATCGCGCCCTGCCCCTCTTGCCGCCGAGTAT
CTGTGATCTGCCGCCAACCCTTGGAGCGTTTGTTTTTGCTCGGACTTCAT
TTGCTCTTTGTTTCTGCTTACGTGAGAAGTTTTGTCGTTATTCCTCGGTC
GTGGCTGCTGCGTAGTCGACCATCGTTTTGATGGTTTCCACGCTACGTTT
CAAGTGTAAATGCTACGGCGCTGGTAATGAGGTAGTGCACGGGGTTTGGG
TAGGGTAGTCATCTGCTGCTCGCCTCGGTGTTTCGACCAATCTTCGCAGA
ACGCCATGACGTTGTTCACGCGCGTCATAGTCTATGCACGATCTAGTCGT
GCTCGTCACTACTGCTGTGCTGGCAGAGGGAACTGGCTGTTCGTTTGCTC
TCGTTGCTTTCGGCGCGTTGCGCCCGGTTGCCGTCCTAAAATCCATCTGT
GCTTTTGTGCACCCCCCTCCTCTTACTGCCGCTTGTTCGTTGCGTCGGGC
AGAAAATCCGCACCATCGAGCTTGATAGCAAGACCATCAAGCTGCAAATT
GTGAGTGTGTGTGTGTTGCAGGGTTGGTTGCAGGACTGCCGTAGAGCGGT
GGTCGGTTCCAGTCGAAGGAACCGGCAGTCGGTCTGCTGTGGACGATGTT
CGGTTGTCGGATGGACCGTTTTGCCAGGGCACCTCTGCTTTCTCTACGAC
CTGAGAGAAGCAGCAGCAGCAGCAGCAGCAGTATTGATCTCGTCGTCTCT
CTGTTTGCCTGTGAGGTGCCCTTTTTTCTCTTGTTCTGTACAAGCATTTA
TTGGCGAGTTGAACGCGCCCACACTTTGACTTTTTTGTGTTTGCGACATG
CATCTATCTCATCCGGTGACCTCCTGTCTGTACCGTCGTGGGCTCCTTCC
GTTTGTTTATTCCCATGTGCTCGGCGGTGATGACATTTTCTTACTGTTTT
TTATCACTTCAACTATATTTTAACCGCTTTTTTTACACTGCTTTTCTTTT
TGGCGGGTTGTCGTCGCCGTGTACACGTACATACTGCTGCGTGCTTGTGC
GCGTAGTGGGACACTGCGGGACAGGAGAGGTTCCGGACGATCACGTCCTC
GTACTACCGGGGAGCCCACGGCATCATCGTGGTGTACGACGTCACCGACA
AGGAGTCGTTCAACAACGTTAAGCAATGGCTCCACGAGATTGACAGGTGG
GTGGTGAGATTTGTTGCGTTGTCTCTTTCCATTTTGGCGTTGGCCGCGTT
AAAAAGTCTGGCCAATGAAATGCATCAGTCTAAAAGCGCGGCTGAAAACA
GAAAGCCCTCTTAAAGGCCATCTCTCTCTCTCTGCGTGTGTGTTTGTTGC
ATCGATCGCGCTAGAAGCTGAACAGCTGACCAGTTATATACCGCAGTGGG
CCCTATGCCCAGAGATTTTTGCCGGCACTATGGCGGACACGGGCACTATT
CAAAGTACAGAACGACTTGGTTGTTTAGTGTGTGCGAGCCGAAAACACCA
GCACTATTCGGGGCACCCGGCGCTACGGTGTTCGACCGGCACTATACAGG
GTCCACTACTGCTTAGTGGTACGTCAGTCTTACTAAGTAAGGCCCAATAG
GAAAACGCTTCGACTGACTGTTAAACCCATGGTGTGGGGTTCGGTGAGGG
GGGGTCACGGGGGAGGCTGAGCTATTTGTTGTCCAAGGTGAAGACAGAAA
CGATGATTGCAGGTGTATGTGTGTTCGTGTCGTACAGTAGGGAGTATTGT
AGCAAGTTAAGCTGCAAAGCGACGGCGTTTGCGGTTGTGCTTGCCCAGCG
GAGGGAGCAACATGAAACGATGGCACGGGTGCGCTCGCTGTTCGCGGTGG
CGTACAGCGGGAAATCCCGCAGACACAGTGTCTCTCTCCCACGACGGTGC
TCACCAGCACCCTCTCGCGTGCACTCCCCATGTGCTCGTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCACAGGTATG
CGTGTGAAAATGTGAACAAGTTGCTGGTGGGGAACAAGAGCGATCTCGAG
GCTAAGCGCGCGGTCACCACGGAGGAGGCCAAGGTGAGAAAAAGACAAGA
GGCGACATATATAAATTACTCTCAGAAAAAGACGAGACAGGATGATGTGG
TACATACAAAGTTAGGGGCGGAAAGGGAGGGTCTATTGCTGTTGTTGATT
CGGGGAGTGGCAAGAAGGTTAAGAGAAGAACAAGCCTCGTCTGGATGGAG
CACTCAAGGAACGCTCTTCTCCAAGTCCGGGGTCTCCTTTCCGTGTCTCC
TGCGGTACTGTACTGTGTGTATCCCATCTTGATGTCGCATGTTGTGCTAA
GGGTTGGTTGCACGGTTATCAGTAATTTTCTTGAGTTTTGGTTTTGCCTG
CATCCATGATATACATGATCAACATGCTGACACCTATTTCAAGCCGACTG
GGCATCGTTTTGAAGGTACACTTCCAGCACGATGCCTAGTCGGGTTACAA
CAAGTGTCAGGATGCGTGTCACGTCTTAACTGGTGTTTTACCCGTGCAAC
CTTAACACAACCCGCACAGCGACCATCTTATATCTACCTTCGTATGCATA
TATATGCCGGATCCCCGAACTCCATCCTTATTTGTGTTTTGTGTTTAATT
ATGTGAAGAAATGCTGCGATATGATGGTCCCCTGTTTCTGCGCCACAGGC
TTCCCCCTCGCCAGAGGGGGACTGCTAATATGAGGTTGCCAACGACGAGA
GGATGTATAAAATATGGTGCACGCAATCATCTATCCCATCTATTTTCTCG
ACGTCAAATTATTTCTCTCTGGTGTCCATGTTGGTGTCCATGTTTGTATG
CACAGCGAGCACTCGACAAGAACGGTATCCCGTGTGGTGAACGTTATTTC
CAGTAGTCATTTCGACAATCCAAAAATGCTCAATTTTTTTTTTGCCCCAG
GCATTCGCGGACACGCTCGGGATCGAGTTCCTCGAGACTTCGGCAAAGAA
CGCCTCCAACGTTGAGAAGGCCTTCATGATGATGGCCAGCCAGATCAAGA
GCCGCATGAAGAGCCAGCCCACGGGGGCGCCCCGCGGCGGCACGAGGCTC
ACCGCCTCCACACAAGTCTCGGGGGCCGGGTCGGGCGGTGGTTGTTGCTG
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:189968..193518-

>mRNA_E-siliculosus-1a_M_contig91.17201.1 ID=mRNA_E-siliculosus-1a_M_contig91.17201.1|Name=mRNA_E-siliculosus-1a_M_contig91.17201.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:189968..193518- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GATTACCTGTTTAAGCTGCTGTTGATCGGAGACTCGGGCGTGGGAAAGTC
GTGTCTGCTGTTGCGGTTTGCGGACGACACCTACACGGAGAGTTACATCT
CTACCATCGGGGTGGACTTTGATTACCTGTTTAAGCTGCTGTTGATCGGA
GACTCGGGCGTGGGAAAGTCGTGTCTGCTGTTGCGGTTTGCGGACGACAC
CTACACGGAGAGTTACATCTCTACCATCGGGGTGGACTTTAAAATCCGCA
CCATCGAGCTTGATAGCAAGACCATCAAGCTGCAAATTAAAATCCGCACC
ATCGAGCTTGATAGCAAGACCATCAAGCTGCAAATTTGGGACACTGCGGG
ACAGGAGAGGTTCCGGACGATCACGTCCTCGTACTACCGGGGAGCCCACG
GCATCATCGTGGTGTACGACGTCACCGACAAGGAGTCGTTCAACAACGTT
AAGCAATGGCTCCACGAGATTGACAGTGGGACACTGCGGGACAGGAGAGG
TTCCGGACGATCACGTCCTCGTACTACCGGGGAGCCCACGGCATCATCGT
GGTGTACGACGTCACCGACAAGGAGTCGTTCAACAACGTTAAGCAATGGC
TCCACGAGATTGACAGGTATGCGTGTGAAAATGTGAACAAGTTGCTGGTG
GGGAACAAGAGCGATCTCGAGGCTAAGCGCGCGGTCACCACGGAGGAGGC
CAAGGTATGCGTGTGAAAATGTGAACAAGTTGCTGGTGGGGAACAAGAGC
GATCTCGAGGCTAAGCGCGCGGTCACCACGGAGGAGGCCAAGGCATTCGC
GGACACGCTCGGGATCGAGTTCCTCGAGACTTCGGCAAAGAACGCCTCCA
ACGTTGAGAAGGCCTTCATGATGATGGCCAGCCAGATCAAGAGCCGCATG
AAGAGCCAGCCCACGGGGGCGCCCCGCGGCGGCACGAGGCTCACCGCCTC
CACACAAGTCTCGGGGGCCGGGTCGGGCGGTGGTTGTTGCTGAGCATTCG
CGGACACGCTCGGGATCGAGTTCCTCGAGACTTCGGCAAAGAACGCCTCC
AACGTTGAGAAGGCCTTCATGATGATGGCCAGCCAGATCAAGAGCCGCAT
GAAGAGCCAGCCCACGGGGGCGCCCCGCGGCGGCACGAGGCTCACCGCCT
CCACACAAGTCTCGGGGGCCGGGTCGGGCGGTGGTTGTTGCTGA
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