mRNA_E-siliculosus-1a_M_contig91.17195.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig91.17195.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI) HSP 1 Score: 2120 bits (5493), Expect = 0.000e+0 Identity = 1133/1280 (88.52%), Postives = 1156/1280 (90.31%), Query Frame = 1
Query: 1 MMRLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESLGGLSRVMALGYLNLSSNFIPLDGLRPLARAHILELFLGSGRSSKERRRTLCVLPNLWVLDDEFVTAEERRIADDNHQHNGRGGGGTSDHLLPTWNQPSPKRGKTRDKNGSTAIASPSSIVVVKDAGRQHPPQNQEESACKSGFVDLETQGHLTQEFYENVVWKIPSRAVILFTRSPACPELVAWQTSPMDQRVYDQMEPLLARAKLSHDDLHPTSVSFGGEGHGDHRRDGLGGGSVVPSRHRSPRTPCFHFDPLPADDDRGDRGGVYATQLADSVNSLPPPDAGFWRANIRRPRSGERVQVLCDTWSVIVTVDPEAFLVTVAPFEGIQTSAYGGEARIDSRDLYYDPRGWWSHVPAIAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGDGDEPSQILNGRPSGGDREVVVDSSRNYTDLLLPSAAQQLSPPASPAAAPVSENLSPAVSTEPSTARGLTASSNAAAAPSNPSPAPSVLRSHRCPNNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAARRMGGRRARQVAWYRIDGPEVSVAPRPTMPRCSSLTTPFRVGDTPSRQLQQSASTSSIPRLSSKHAPLRLAAVAPSYGGGSSVYARFSQSRGLSVPSINTNSCSTPAPEKLPTAADEAWLELQREMGSLKADNRMLVRDSSRGGXXXXXXXXSGECINTSTIFASSPAMSVVTKSLAENSTVGAQATTDMLAKTLTQTLDSPPSAWKGGNPVSATATVFELTEVDGRPEKDAGEGAGSPTSASLAHETTRSTGNWRVDNQQQEVSPPEECSKQVRMGEGDKPDTAASSHRXXXIPDXGNSTAASATTRKWKPNAFRPLEWFPVPGRQVFLVDPNDAKAAPAAEPVGRPVESDTSNTXXXPPEXXXXXXXXXXXXXXXX-------SSESRQAVGGEGTVEQDKARTRGGQAKDKRGIDSGKGQPGSGSPSTRSPFPTAAVLNNSLLSPATNRDTGGRPRIWTRSRRARSSRSLHSAGALRALAGQKSIGLLADALRPKSPDSLGVITSSSTQVRLEIDPDDVRSRGFHRREEEHLRETRQYVEASDVASGLAVTPSVRPMVSGSTGRRTALTKAVVPHWRHDKRHPARRLPQCQRLTISGWEGAEDAGSPSVDLGRLPTFKPSESLELESSCRNLGAVRDKGGRGASPSGGILKSSFARGNRGGVRVKARPASPHHSDSGLDECFSISSAATSNNNSCCGWRKSDSM 3819
M RLVGLDACP VTSLDVSWNALTELDSACLE CKELWIVDASHNRLESLGGLSRVMALGYLNLSSNFIPLDGLRPL+RAHILELFLGSGRSSKERRRTLCVLPNLWVLDDEFVTAEERRIADDNHQHNGRG G TSDHLLPTWNQ SPKR KTRDKN STAIASPSSIVVVKDAGR HPPQ Q+ESACKSGFVDLETQGHLTQ+FYENVVWKIPSRAVILFTRSPACPELVAWQTSPMDQ YDQMEPLLARAKLSHDDLHPTSVSFGGE GDHRRDGLGGGSVVPSRHRSPRTPCFHFDPLPADDDRGDRGGV+ATQLADSV+SLP PDAGFWRA+IRRPRSGERVQVLCDTWSVIVTVDPEAFLVTVAPFEGIQTSAY GEARIDSRDLYYDPRGWWSHVPAIAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEG GDEPSQILNGRPSGGDREVVVDSSRNYTDLLLPSAAQQLS PAS AAAPVS++LSPAVSTEPS SVLRSHRCPNNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAARRMGGRRARQVAWYRIDGPEVSVAPRPTMPRCSSL PFRVGDTPSR LQQSASTSS+PRLSSK APLRLAAVAPS+GGG+SVYARFSQSRGLSVPSINTNSCS PA +KLPTAADEAWLELQREMGSLKADNRML+RDSS+G XXXX ECINTSTI ASSPAMSVVTKSLAENSTVGAQATTDMLAKTLT+TLDSP SAWKGGN VSATATVFELT+V GRPEKDAGE A SPTS SL HETTRST NWRVDNQQQEVSPPEECSKQVR+ EGDKPDTAASSHRXXX P X NSTAASATTRKWKPNAFRPLEWFPVPGRQVF VDPND AAPAAEPVGRPVES TSNT PPE XXXXXXXXXX S RQAVGGE TVEQDKA RGGQAK+K I+SGKGQPG+GSPSTRSPFPTAAVLNN LLSPATNRD G RP IWTRSRRARSSRSLHSAGA RAL QK GLLADALRPKSPDSLGVITS STQVRLEIDP DVRSRGFHRREEEH RETRQ VEASDV+SGLAVTP VRPMVSG TG+R A TKAVVPHW+HDKRHPARR PQCQRLTISGWEGAE AGS S DL RLPTFKPSES ELESSCRNLGAV DKGG GA PSGGILKSS ARG RGG RVKARPASPHHSDSGLDECFSISSAATSNNNSCCGWRKSDSM
Sbjct: 1 MTRLVGLDACPSVTSLDVSWNALTELDSACLEECKELWIVDASHNRLESLGGLSRVMALGYLNLSSNFIPLDGLRPLSRAHILELFLGSGRSSKERRRTLCVLPNLWVLDDEFVTAEERRIADDNHQHNGRGWGATSDHLLPTWNQSSPKRDKTRDKNSSTAIASPSSIVVVKDAGRHHPPQKQKESACKSGFVDLETQGHLTQDFYENVVWKIPSRAVILFTRSPACPELVAWQTSPMDQPAYDQMEPLLARAKLSHDDLHPTSVSFGGEVDGDHRRDGLGGGSVVPSRHRSPRTPCFHFDPLPADDDRGDRGGVHATQLADSVDSLPLPDAGFWRASIRRPRSGERVQVLCDTWSVIVTVDPEAFLVTVAPFEGIQTSAYRGEARIDSRDLYYDPRGWWSHVPAIAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGKGDEPSQILNGRPSGGDREVVVDSSRNYTDLLLPSAAQQLSQPASSAAAPVSKSLSPAVSTEPSXXXXXXXXXXXXXXXXXXXXXXSVLRSHRCPNNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAARRMGGRRARQVAWYRIDGPEVSVAPRPTMPRCSSLRMPFRVGDTPSRHLQQSASTSSVPRLSSKQAPLRLAAVAPSHGGGNSVYARFSQSRGLSVPSINTNSCSMPAAKKLPTAADEAWLELQREMGSLKADNRMLIRDSSQG-----XXXXXXECINTSTISASSPAMSVVTKSLAENSTVGAQATTDMLAKTLTRTLDSPLSAWKGGNTVSATATVFELTQVGGRPEKDAGECASSPTSVSLTHETTRSTDNWRVDNQQQEVSPPEECSKQVRVAEGDKPDTAASSHRXXXXPXXXNSTAASATTRKWKPNAFRPLEWFPVPGRQVFRVDPNDVNAAPAAEPVGRPVESGTSNTPNVPPEGQGAEGXXXXXXXXXXXXXXXXCGSSERQAVGGEDTVEQDKAGRRGGQAKEKIRIESGKGQPGNGSPSTRSPFPTAAVLNNGLLSPATNRDMGVRPTIWTRSRRARSSRSLHSAGAFRALDRQKPNGLLADALRPKSPDSLGVITSFSTQVRLEIDPHDVRSRGFHRREEEHCRETRQCVEASDVSSGLAVTPGVRPMVSGPTGQRPARTKAVVPHWQHDKRHPARRQPQCQRLTISGWEGAEGAGSTSGDLMRLPTFKPSESPELESSCRNLGAVSDKGGPGAPPSGGILKSSLARGKRGGARVKARPASPHHSDSGLDECFSISSAATSNNNSCCGWRKSDSM 1275
BLAST of mRNA_E-siliculosus-1a_M_contig91.17195.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE) HSP 1 Score: 2034 bits (5271), Expect = 0.000e+0 Identity = 1106/1370 (80.73%), Postives = 1139/1370 (83.14%), Query Frame = 1
Query: 1 MMRLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESLGGLSRVMALGYLNLSSNFIPLDGLRPLARAHILELFLGSGRSSKERRRTLCVLPNLWVLDDEFVTAEERRIADDNHQHNGRGGGGTSDHLLPTWNQPSPKRGKTRDKNGSTAIASPSSIVVVKDAGRQHPPQNQEESACKSGFVDLETQGHLTQEFYENVVWKIPSR--------------------------------------------------------------------------AVILFTRSPACPELVAWQTSPMDQRVYDQMEPLLARAKLSHDDLHPTSV-----------------------SFGGEGHGDHRRDGLGGGSVVPSRHRSPRTPCFHFDPLPADDDRGDRGGVYATQLADSVNSLPPPDAGFWRANIRRPRSGERVQVLCDTWSVIVTVDPEAFLVTVAPFEGIQTSAYGGEARIDSRDLYYDPRGWWSHVPAIAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGDGDEPSQILNGRPSGGDREVVVDSSRNYTDLLLPSAAQQLSPPASPAAAPVSENLSPAVSTEPSTARGLTASSNAAAAPSNPSPAPSVLRSHRCPNNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAARRMGGRRARQVAWYRIDGPEVSVAPRPTMPRCSSLTTPFRVGDTPSRQLQQSASTSSIPRLSSKHAPLRLAAVAPSYGGGSSVYARFSQSRGLSVPSINTNSCSTPAPEKLPTAADEAWLELQREMGSLKADNRMLVRDSSRGGXXXXXXXXSGECINTSTIFASSPAMSVVTKSLAENSTVGAQATTDMLAKTLTQTLDSPPSAWKGGNPVSATATVFELTEVDGRPEKDAGEGAGSPTSASLAHETTRSTGNWRVDNQQQEVSPPEECSKQVRMGEGDKPDTAASSHRXXXIPDXGNSTAASATTRKWKPNAFRPLEWFPVPGRQVFLVDPNDAKAAPAAEPVGRPVESDTSNTXXXPPEXXXXXXXXXXXXXXXXSSESRQAVGGEGTVEQDKARTRGGQAKDKRGIDSGKGQPGSGSPSTRSPFPTAAVLNNSLLSPATNRDTGGRPRIWTRSRRARSSRSLHSAGALRALAGQKSIGLLADALRPKSPDSLGVITSSSTQVRLEIDPDDVRSRGFHRREEEHLRETRQYVEASDVASGLAVTPSVRPMVSGSTGRRTALTKAVVPHWRHDKRHPARRLPQCQRLTISGWEGAEDAGSPSVDLGRLPTFKPSESLELESSCRNLGAVRDKGGRGASPSGGILKSSFARGNRGGVRVKARPASPHHSDSGLDECFSISSAATSNNNSCCGWRKSDSM 3819
M RLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESLGGLSRVMALGYLNLSSNFIPLDGLRPLARAHILEL LGSGRSS+ERRRTLC LPNLWVLDDEFVTAEERRIADD+HQHNG GGG TSDHLLPTWNQPSPKR KTRDK+GSTAIASPSSIVVVKD GR HP Q Q+ SA KSGFVDLETQGHLTQ+FYENVVWKIPSR AVILFTRSPACPELVAW+TSPMDQR YDQMEPLLARAKLSHDDLHPTSV SFGGE HGDHRRDGLG GSVVPSRHRSPRTPCFH DPLPADDD GDRGGV ATQ A SV+S PPDAGFWRANIRRPRSGERVQVLC TWSVIVTVDPEAFLVTVAPFE IQ+SAY G+ RIDSRDLYYDPRGWW HVPA+AGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGDGDEPSQILNGRPSGGDREV+VDSSRNYT +APVSEN SPAVSTEPSTA GLTASSNAAAAPSN SP PSVLR H CP NNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAA RMGGRRARQVAWY IDG EVSVAPRPTMPRC+SLT PFRVGDTP RQLQQSASTSSIPRLSSKHA LRLAAV PS+GG +SVYARFSQSRGLSVPSINT+SCS PA EK+PT+ADEAWLELQREMGSLKADNRMLVRDSSRGGXXXXXX SGECINTSTI ASSPAMSVVTKSLAENSTVGAQATT+MLAKTLT+TLDSP SAWKGGNPVSATATVFELT+VDGRPEKDAGEGA SP+SASLAHETTRST WRVDNQQQEVSPPE+CSKQVRMGEGDKPD ASSHR IPD GNSTAASATTRKWKPNA RPLEWFPVPG+QVFLVDPND AAPAAEPVGRPVESDTSNT PPE XXXXX SSESR AVGGE VEQD A RGGQ +KR IDSGKG+ G GSPSTRSPFPTAAVLNNSLLSPATNRDTG PRIWTRSRRARSS+SL SAGAL A+ G KS GLLADALRP+SP SLGV+TSSSTQVRLEIDPDD RSRGFHRREE H RETRQ VEASDV SGLAVTP VRPMVSGSTG+R A TKAV PHWRHDK PARRLPQCQRLTISG EGA+DAGS S DLGRLPTF PSES ELESSCRNLGAVRDK RGA PSG ILKSSFARGNRGGVRVKARPASPHH DSGLDE SISSAATSNNNSCCGW+KSDSM
Sbjct: 1 MTRLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESLGGLSRVMALGYLNLSSNFIPLDGLRPLARAHILELSLGSGRSSEERRRTLCALPNLWVLDDEFVTAEERRIADDSHQHNGSGGGATSDHLLPTWNQPSPKRDKTRDKDGSTAIASPSSIVVVKDVGRHHPSQKQKASAYKSGFVDLETQGHLTQDFYENVVWKIPSRQQRDLLEALPPIITGIDVDHVFESWEDSSGHARGSNQEGEAAWGADDEAGATGLGSIEANVPPRGIGLTRLCRRAVILFTRSPACPELVAWKTSPMDQRAYDQMEPLLARAKLSHDDLHPTSVVAIGAIGTFPGFPIATLCSLPSQSFGGEVHGDHRRDGLGWGSVVPSRHRSPRTPCFHLDPLPADDDSGDRGGVCATQQAASVDSSSPPDAGFWRANIRRPRSGERVQVLCGTWSVIVTVDPEAFLVTVAPFESIQSSAYRGDVRIDSRDLYYDPRGWWCHVPALAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGDGDEPSQILNGRPSGGDREVIVDSSRNYTG-----------------SAPVSENFSPAVSTEPSTANGLTASSNAAAAPSNLSPTPSVLRIHLCPKNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAALRMGGRRARQVAWYHIDGSEVSVAPRPTMPRCTSLTMPFRVGDTPPRQLQQSASTSSIPRLSSKHAHLRLAAVVPSHGGDNSVYARFSQSRGLSVPSINTSSCSRPAAEKVPTSADEAWLELQREMGSLKADNRMLVRDSSRGGXXXXXX--SGECINTSTISASSPAMSVVTKSLAENSTVGAQATTNMLAKTLTRTLDSPLSAWKGGNPVSATATVFELTQVDGRPEKDAGEGASSPSSASLAHETTRSTDIWRVDNQQQEVSPPEDCSKQVRMGEGDKPDATASSHRRRRIPDDGNSTAASATTRKWKPNASRPLEWFPVPGKQVFLVDPNDVMAAPAAEPVGRPVESDTSNTSNVPPEDQGAEXXXXXNCG---SSESRHAVGGEDAVEQDPAGKRGGQVNEKRRIDSGKGKTGGGSPSTRSPFPTAAVLNNSLLSPATNRDTGVTPRIWTRSRRARSSQSLRSAGALGAIGGHKSNGLLADALRPESPGSLGVMTSSSTQVRLEIDPDDERSRGFHRREEGHRRETRQCVEASDVGSGLAVTPGVRPMVSGSTGQRPARTKAVAPHWRHDKTQPARRLPQCQRLTISGLEGAKDAGSTSGDLGRLPTFSPSESPELESSCRNLGAVRDKSCRGAPPSGRILKSSFARGNRGGVRVKARPASPHHLDSGLDERLSISSAATSNNNSCCGWQKSDSM 1348 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig91.17195.1 >prot_E-siliculosus-1a_M_contig91.17195.1 ID=prot_E-siliculosus-1a_M_contig91.17195.1|Name=mRNA_E-siliculosus-1a_M_contig91.17195.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1274bp MMRLVGLDACPGVTSLDVSWNALTELDSACLEGCKELWIVDASHNRLESLback to top mRNA from alignment at E-siliculosus-1a_M_contig91:125011..133170+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig91.17195.1 ID=mRNA_E-siliculosus-1a_M_contig91.17195.1|Name=mRNA_E-siliculosus-1a_M_contig91.17195.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8160bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:125011..133170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig91:125011..133170+ >mRNA_E-siliculosus-1a_M_contig91.17195.1 ID=mRNA_E-siliculosus-1a_M_contig91.17195.1|Name=mRNA_E-siliculosus-1a_M_contig91.17195.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7644bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig91:125011..133170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |