mRNA_E-siliculosus-1a_M_contig90.17137.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17137.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17137.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: D8LKJ9_ECTSI (Arf2B, ARF family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ9_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 2.670e-133
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKNKRGAKR 840
            MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDE RIEEARDEMFHVLRDPNM+GCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKN+RGA+R
Sbjct:    1 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDENRIEEARDEMFHVLRDPNMDGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKNRRGARR 193
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: D8LKJ1_ECTSI (Arf2A, ARF family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ1_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 7.410e-92
Identity = 129/186 (69.35%), Postives = 159/186 (85.48%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKK 819
            MG +++RL +IL  L+EKRLLLLGLD AGKTSLLY LHLNE V T+PT+GFN+E+VEYN M+MTIWD+GGQ KLR LW +YF++TDALIF+VDS+D  RIEEARDE+FH+L+DPNM+GCQTVLI+LNKQD+PGA+ P  +  ++GL+ AG NPL +RNWYMQ CCA+TGEGV+ GLDWL  AL KK
Sbjct:    1 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 186
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: UPI001929E330 (ADP-ribosylation factor 1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E330)

HSP 1 Score: 200 bits (509), Expect = 1.490e-59
Identity = 94/185 (50.81%), Postives = 132/185 (71.35%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKK 816
            MG  +S LV +L   KE R+L++GLD AGKT++LY L L E + T+PT+GFN+E VEY N+  T+WDVGGQ K+R LWR+YF +T  LIF++DS+D  RI EAR+E+  +L +  + G  T+L+  NKQD+P A+    + D++GL+S     LR+RNWY+QSCCA +GEG++ GLDWL   + K
Sbjct:    1 MGMTISTLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRERIAEARNELHRILSEDELRGA-TLLVFANKQDLPNAMRVSEITDKLGLHS-----LRQRNWYIQSCCAASGEGLYEGLDWLSSNISK 179
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A8B7CCW4_PHODC (ADP-ribosylation factor 1-like n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7CCW4_PHODC)

HSP 1 Score: 200 bits (508), Expect = 5.470e-58
Identity = 95/191 (49.74%), Postives = 136/191 (71.20%), Query Frame = 1 
Query:  253 AAPMGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKNK 825
            AA MG  +SR+V +L   +E R+L++GLD AGKT++LY L L E + T+PT+GFN+E VEY N+  T+WDVGGQ K+R LWR+YF +T  LIF+VDS+D+ RI EARDE+  +L +  ++G  T+L+  NKQD+P A+    + D++GL++     LR+R WY+QS CA TGEG++ GLDWL   +  K +
Sbjct:  102 AAAMGLAISRMVRMLFAKREMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERILEARDELHRMLGEDELQGA-TLLVFANKQDLPNAMSVSEITDKLGLHA-----LRQRRWYIQSACATTGEGLYEGLDWLSSNISDKTR 286
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A2H9ZX41_9ASPA (ADP-ribosylation factor n=3 Tax=Orchidaceae TaxID=4747 RepID=A0A2H9ZX41_9ASPA)

HSP 1 Score: 196 bits (498), Expect = 6.820e-58
Identity = 94/188 (50.00%), Postives = 133/188 (70.74%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKNK 825
            MG  +SRLV +L   +E R+L++GLD AGKT++LY L L E + T+PT+GFN+E V+Y N+  T+WDVGGQ K+R LWR+YF +T  LIF++DS+D  RI EARDE+  +L +  ++G  T+LI  NKQD+P A+    + D++GL++     LR+R WY+QS CA TGEG++ GLDWL   +  K K
Sbjct:    1 MGLALSRLVKMLFARREMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVDYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRERISEARDELHRMLSEDELQGA-TLLIFANKQDLPNAMSISEITDKLGLHA-----LRQRRWYIQSACATTGEGLYEGLDWLSNNIFSKAK 182
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A3S3Q2S8_9MAGN (ADP-ribosylation factor n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3Q2S8_9MAGN)

HSP 1 Score: 196 bits (498), Expect = 6.820e-58
Identity = 93/188 (49.47%), Postives = 133/188 (70.74%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKNK 825
            MG  +SRL+  L + KE R+L++GLD AGKT++LY L L E V T+PT+GFN+E V+Y N+  T+WDVGGQ K+R LWR+YF +T  LIF++DS+D+ RI EARDE+  +L +  +    T+L+  NKQD+P A+    + D++GL+S     LR+R WY+QS CA TGEG++ GLDWL   +  K++
Sbjct:    1 MGMTISRLIRQLFSRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVDYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDKERISEARDELHRMLSEEELRDA-TLLVFANKQDLPNAMSVSEITDKLGLHS-----LRQRRWYIQSACATTGEGLYEGLDWLSNNISTKSR 182
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A7J6A7S4_AMEME (Uncharacterized protein n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A7J6A7S4_AMEME)

HSP 1 Score: 196 bits (498), Expect = 2.350e-57
Identity = 95/198 (47.98%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:  229 RGHQGIKQAAPMGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKN 822
            R +Q   Q A MG++   L+  L   KE R+L++GLD AGKT++LY L L E V T+PT+GFN+E VEY N+  T+WDVGGQ K+R LWR+YF +T  LIF+VDS+D  R+ EAR+E+  +L +  +     +L+  NKQD+P A+    + D++GL+S     LR RNWY+Q+ CA +G+G++ GLDWL   LK KN
Sbjct:   25 RRYQRKGQPATMGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA-VLLVFANKQDLPNAMNAAEITDKLGLHS-----LRHRNWYIQATCATSGDGLYEGLDWLANQLKNKN 216
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A7C8ZII1_OPUST (ADP-ribosylation factor n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C8ZII1_OPUST)

HSP 1 Score: 194 bits (494), Expect = 2.620e-57
Identity = 93/187 (49.73%), Postives = 130/187 (69.52%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKN 822
            MG  +SR V  L   KE R+L++GLD AGKT++LY L L E V T+PT+GFN+E VEY N+  T+WDVGGQ K+R LWR+YF +T  LIF+VDS+D  R+ EARDE+  +L +  +    T+L+  NKQD+P A+    + D++GL+S     LR+R WY+Q+CCA +GEG++ GLDWL   +  K+
Sbjct:    1 MGAALSRWVKTLFAKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVTEARDELHRMLNEDELRDA-TLLVFANKQDLPNAMSVAEITDKLGLHS-----LRQRRWYIQACCATSGEGLYEGLDWLSNNIASKS 181
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BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A1R3GES4_COCAP (ADP-ribosylation factor n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GES4_COCAP)

HSP 1 Score: 195 bits (495), Expect = 3.200e-57
Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKK 819
            MG  +SRLV +L   KE R+L++GLD AGKT++LY L L E V T+PT+GFN+E VEY N+  T+WDVGGQ K+R LWR+YF +T  LIF+VDS+D  RI EARDE+  +L +  +    T+L+  NKQD+P A+    + D++GLNS     LR+R WY+Q+ CA +G+G++ GLDWL   +  K
Sbjct:    1 MGMTISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERISEARDELHRMLSEDELRDA-TLLVFANKQDLPNALTVSEITDKLGLNS-----LRQRRWYIQATCATSGQGLYEGLDWLSSNISTK 180
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Match: A0A2C9UQV1_MANES (ADP-ribosylation factor n=4 Tax=fabids TaxID=91835 RepID=A0A2C9UQV1_MANES)

HSP 1 Score: 194 bits (492), Expect = 5.210e-57
Identity = 93/186 (50.00%), Postives = 131/186 (70.43%), Query Frame = 1 
Query:  262 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARIEEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKK 819
            MG  +SRL+ +L   KE R+L++GLD AGKT++LY L L E V T+PT+GFN+E VEY N+  T+WDVGGQ K+R LWR+YF +T  LIF+VDS+D+ RI EARDE+  +L +  +    T+L+  NKQD+P A+    + D++GL+S     LR+R WY+QS CA +G+G++ GLDWL   +  K
Sbjct:    1 MGLAISRLLKLLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLNEDELRDA-TLLVFANKQDLPNAMTVSEITDKLGLHS-----LRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKJ9_ECTSI2.670e-13397.93Arf2B, ARF family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
D8LKJ1_ECTSI7.410e-9269.35Arf2A, ARF family GTPase n=1 Tax=Ectocarpus silicu... [more]
UPI001929E3301.490e-5950.81ADP-ribosylation factor 1-like n=1 Tax=Dioscorea c... [more]
A0A8B7CCW4_PHODC5.470e-5849.74ADP-ribosylation factor 1-like n=2 Tax=Phoenix dac... [more]
A0A2H9ZX41_9ASPA6.820e-5850.00ADP-ribosylation factor n=3 Tax=Orchidaceae TaxID=... [more]
A0A3S3Q2S8_9MAGN6.820e-5849.47ADP-ribosylation factor n=1 Tax=Cinnamomum micrant... [more]
A0A7J6A7S4_AMEME2.350e-5747.98Uncharacterized protein n=2 Tax=Siluroidei TaxID=1... [more]
A0A7C8ZII1_OPUST2.620e-5749.73ADP-ribosylation factor n=3 Tax=Pentapetalae TaxID... [more]
A0A1R3GES4_COCAP3.200e-5750.54ADP-ribosylation factor n=1 Tax=Corchorus capsular... [more]
A0A2C9UQV1_MANES5.210e-5750.00ADP-ribosylation factor n=4 Tax=fabids TaxID=91835... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:272136..278101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size582
Model size1200
Exons6
Ec32 orthologEc-16_003240.1
Ec32 ortholog descriptionArf2B, ARF family GTPase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG1100@1,KOG0070@2759
EggNOG free text desc.GTP binding
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
KEGG koko:K07937,ko:K07977
Seed eggNOG ortholog2880.D8LKJ9
Seed ortholog evalue1.5e-106
Seed ortholog score392.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17137.1prot_E-siliculosus-1a_M_contig90.17137.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 272493..277840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936425.455179-UTR-E-siliculosus-1a_M_contig90:272135..2724921622936425.455179-UTR-E-siliculosus-1a_M_contig90:272135..272492Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 272136..272492 -
1696251072.6321955-UTR-E-siliculosus-1a_M_contig90:272135..2724921696251072.6321955-UTR-E-siliculosus-1a_M_contig90:272135..272492Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 272136..272492 -
1622936425.6992686-UTR-E-siliculosus-1a_M_contig90:277840..2781011622936425.6992686-UTR-E-siliculosus-1a_M_contig90:277840..278101Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 277841..278101 -
1696251072.7104983-UTR-E-siliculosus-1a_M_contig90:277840..2781011696251072.7104983-UTR-E-siliculosus-1a_M_contig90:277840..278101Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 277841..278101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936425.5165884-CDS-E-siliculosus-1a_M_contig90:272492..2725881622936425.5165884-CDS-E-siliculosus-1a_M_contig90:272492..272588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 272493..272588 -
1696251072.6478162-CDS-E-siliculosus-1a_M_contig90:272492..2725881696251072.6478162-CDS-E-siliculosus-1a_M_contig90:272492..272588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 272493..272588 -
1622936425.535628-CDS-E-siliculosus-1a_M_contig90:273620..2737191622936425.535628-CDS-E-siliculosus-1a_M_contig90:273620..273719Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 273621..273719 -
1696251072.6568215-CDS-E-siliculosus-1a_M_contig90:273620..2737191696251072.6568215-CDS-E-siliculosus-1a_M_contig90:273620..273719Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 273621..273719 -
1622936425.5788538-CDS-E-siliculosus-1a_M_contig90:274033..2742231622936425.5788538-CDS-E-siliculosus-1a_M_contig90:274033..274223Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 274034..274223 -
1696251072.6652744-CDS-E-siliculosus-1a_M_contig90:274033..2742231696251072.6652744-CDS-E-siliculosus-1a_M_contig90:274033..274223Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 274034..274223 -
1622936425.5949645-CDS-E-siliculosus-1a_M_contig90:274920..2750151622936425.5949645-CDS-E-siliculosus-1a_M_contig90:274920..275015Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 274921..275015 -
1696251072.6738439-CDS-E-siliculosus-1a_M_contig90:274920..2750151696251072.6738439-CDS-E-siliculosus-1a_M_contig90:274920..275015Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 274921..275015 -
1622936425.6640768-CDS-E-siliculosus-1a_M_contig90:275856..2759101622936425.6640768-CDS-E-siliculosus-1a_M_contig90:275856..275910Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 275857..275910 -
1696251072.6887941-CDS-E-siliculosus-1a_M_contig90:275856..2759101696251072.6887941-CDS-E-siliculosus-1a_M_contig90:275856..275910Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 275857..275910 -
1622936425.6837637-CDS-E-siliculosus-1a_M_contig90:277792..2778401622936425.6837637-CDS-E-siliculosus-1a_M_contig90:277792..277840Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 277793..277840 -
1696251072.7011821-CDS-E-siliculosus-1a_M_contig90:277792..2778401696251072.7011821-CDS-E-siliculosus-1a_M_contig90:277792..277840Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 277793..277840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17137.1

>prot_E-siliculosus-1a_M_contig90.17137.1 ID=prot_E-siliculosus-1a_M_contig90.17137.1|Name=mRNA_E-siliculosus-1a_M_contig90.17137.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=194bp
MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVG
FNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDEARI
EEARDEMFHVLRDPNMEGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAG
DNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKKNKRGAKR*
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mRNA from alignment at E-siliculosus-1a_M_contig90:272136..278101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17137.1 ID=mRNA_E-siliculosus-1a_M_contig90.17137.1|Name=mRNA_E-siliculosus-1a_M_contig90.17137.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5966bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:272136..278101- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAATCGGGAGCCGCACATGATCACGATTATGATCCCGTGAATTTCCACCA
TCTCCACACACACTCCACACACACGCGCACATTTCCATATCTCCACACTC
GAGACCCAAACGGCAGTACTGGCAACAACCCAAGCCCCCAGCCCCCAGAT
CACCCTCACCAGCACAATCGCCAGCACTTCCTGAAGCAGCAACGACCAGA
AGCTAACGACGACGCTCCCTGCTCTTTTCGTGGCCATCAAGGAATCAAGC
AAGCAGCACCCATGGGGCATGTGGTCTCTCGTCTCGTCCACATCCTCGGC
ACCCTCAAGGTGCGTGGTGGGAAGCGCACGACCGAGGAGACGACAGCACG
TGCCTTTTCTCTCTCCTCCGTATCTTGTGTGTCCATCGCCCACTGCTGTG
GTTCAATTTGTCCCTTCATGCTGGGGCCTGTCTCATGTCAGCGGCGATTT
ACGGTAGGGTGGCTTGTCGGAAGCTCCTTCGGCTGTAGTGGGGGGACCAC
GGGGAATTCTCTCGCCTTTTGGTTGATGGTGTGCATGTACACCCCCATCA
ATAGAAACTGCTGTCTGCTTCCCCTTCGCCTAAGACTCCTGCACTGCTGT
CTCCCTCCTCACGCCTGAGATCGCAAGGTCTGTCTGCAGTCTGTAGTTTC
AGCTCTCTTCCGAGCGAGATGCGTACCTGCGGCTCAAGGAACAGAACAGT
TTACGTGCATGCACGATACACCACCCCTGGGGTAGAGACGTCATGGCCGT
GCTGAACCTTTAAAATCGGGCTTCACGGTTCATGCATGGGTCTTACCCTA
GGTACATATATAGGTAACCCTCGCTCCTCGTGTTCTTATGGCTAACCGAG
CGTTGCAGCGAGATCAAGCTGTTGGGGTAGAACGAGGTACAGCAGTAAAC
GGCAACGGCAACGGCAACGGCAACTAACCACACGTCTATAATACATCAGA
TGATGACCACCCGCCGGCAAATTGGCGGAACTTTATCGAGCCGTTTTCAC
CCGACCGCCAAGAAACACGAACCACGCAGCCTCGTCGACATATATATGTA
CAAACGCCGTGGTATCCGTATCCGGCTCTACTGCTTAGCAGTAGAGTCTG
CATACATAGGTGGTGGGTGTTTGCGCGGGCGTGTGTGTGTCTTCAAAACC
GTTTGTTTGCCGTATGTTGTTCTTTGGATCTTTACGTTTTGTACTCTTTC
AACCGTCACTTGCAGCAACGTCTAAAGAGTCCAAAAATCTTCCCCGCCCC
CCCCCGCCCCCCGCCAGCCGATGAACAAACGACGTGTCGTGTCCTGTACC
ACACAATACTTGTAGGAAATCGACGATTGAAGTATAGTACGCCCAATTTT
GCGACCGGGAGCGAGTACCTGAGTGCGCTTGCGCCGGTTATTATGTTATT
TGACGTTGCAGCGCGGTATCGACGTTTGGTGAATGAACAACTTGGGGCGA
TGTCAAAACGCTCCATGCCGCTCACACAGGTTTTACTCGCACTCCTCGGC
CGGCGGTGGGTCCTAGCCGTGTACTTTTCAACCCGCCCCCTGATGCGTCG
TTTATTTTACAATAAAACTCTCAAAGAGCGAACAGAAAGCGCACACCTCA
CCCGTTTCCAGATACAGATGTCCAAACCCAAGAGAAACACAATGCCCAGA
AGGTGAGACAGGACAAAGCACTTGGGAAGGGCTGTACGGAATTATGTTAT
TGAGCATGTTTTGTCGGGAAAACTGCGCGTGTGAGCCCCGCTTCGCAACG
CGGATTTTCCAAAATATACGGAAACACTCGTCGTCTCAGCTTCGCTCCTC
CCTGTGGTAGTTGAGAGCCGGCGCGCTTCTGCCTCGAGTAACCACACTAC
GCGTCATTCGTTAGAAGATGGCGCGAGCGTAGACGTTTGGTCTACGCTCC
ACCACATAACTCGCGGTCGGTCATGGCCGCAACGATGGTGTACGTACGCA
ATATGCGGAGGAGGAAGTGGTCAGTCGATTCGGGTAGATAGATGCATGTG
GCTTCTTCGCTTGTTTTTTTTCTGTGGTGGGCATTACGGCGTACAGGAAG
GCGGTGGAGAACAGTTCACCGCCCCGAACCGTGACGTTTCTACACCTGCC
TGCTTGGCTACCGCCGCGAAACCTTCCCAAGCCCCCAACCTTTTCTTTGC
TGCTGCTCCTGTATCGTGTGACACGTTTTCTTTCCTGTCAGGAAAAGCGC
CTCCTGCTACTCGGGCTGGACAATGCGGGCAAAACTTCGCTCTTGGTGAG
ATGTATCCCATCCTATCATCGACGTCGTTTCAGCTTGTGGGCGATGGACG
GTAGTAGCGGGTCCAATTGATAACTTCAACAAGCAGTAACGACAATTGTG
TGCCACGATACACACGTGTACCTTAGAGGCATGGTGGATTGGATGTCATG
GATCCACGGGTTGGGACGTGGGTGCAATAGCTCAACCCACAAGTCGCATG
AAAATTCACTAGCTAGCTTTGCGCACTCTTGTCGAAATCAAACTCAATAC
GTAGCCTCATAAGTTCATAAACGTTTGGTCGGCGACCCCTGTTTTTGGAT
ATTGGTGTGTATCCGCATTGCTATTGAGCCCAATTGCAACACGCCGAAAC
ATATTTTCAGCCTGATCCCTTGCTTGAGACCGCTTTCCGCGCGGACACGT
TTGGTTTTTCAACTAAAACACGTTGTACACTGCTTTTTCGTGTTCCCCGT
TCGATGAGAGCTTTGCCGAAGACGTTGCCCTTTGAACAGTAGTTGTTCGG
GTTGAACTCCGGAGTCTTTTTTCATGTTTGAGCTTAAAAATTACGGTGCG
GTATCCCATGTCCTGCGCTTGTCGTGCCGACTGACTTGCGTCCTCTGCTG
AGCGAGGTTTTGGCTGCTGCGCCCCCTAACCCTTGCCCTCTAGCCCTAAC
CCCAATCCAAACCGTTTCATTCAGCCGCAGCAGCAACGGGAACGCCACCA
CCGACGAGAACAGTTGATAACGCACCGTCCACAACCCGCTCACAAGCACC
CTTACTTACTTTTGCGAAGCATTGGCCTATCGTTGCTGAAACTCTTTTTG
TCTCTTGGTGGTGGCACGCGACGACATCGACGACAGTACAATCTCCACCT
GAACGAGGCCGTGGGCACCGTTCCTACCGTTGGGTTCAACATGGAACAGG
TCGAGTACAACAACATGGTCATGACTATCTGGTGAGTGGCTCCTCTACGG
GAAGAGCAGCATGTATGAATACGGAGGATCTACTTTTTATCACCTGTTTT
GAAGTCTCTTTCCTTGGTGGTCATCCAGACGAAACAGTCATTACTGTGTC
GGTGTCGTCAGTGGCTATACGGCAATAGTAGTATCTATTTTCTGTACGCA
CGAGGACCTCCAGTACGTCTTCTGCAGCGTCTTGTCGAATTTAGTGGTCA
TCCGGACGAAGCGTGTTCTCTCGTGTAGCTCACCACGATACGATGACCTA
AGGTCCATCGGGAAAAAAAAACGGTCAACCACGGTGACGCTGTAGCTCTC
GCCTCACCCTCCATTTCCGGCAAACTGGGGGGTTCACCCCCCCCCAGCGT
CGCCGATCGTCCCCACGAAGGGATGTTCTTTGTTCACCGACAACCCCGTC
CGTTCTCGCCTCCCCCCCTTGGAGTTGCCAGGACTGGCAATTGGTCCATA
CCCACCAGGACTCCCTCCCCAGTGAGGGAGTGCTGGTAGGCTTCGGTGAT
GACACTCAAAATAGTTCCTTTCATTTTCCGCCAGAAACCGAGAGAAAGTG
TGACACACGAGAGCCAGCCCAAGATATCAGATCCCCTAAACGTTCTTTGG
CAGATATATATATATATATATGCACGTGCTGCTCCGCGCTTTGGTCTCTA
CTTGTACGTGCTTGTACGCCCGCGGCAGGGACGTCGGCGGCCAAGCCAAG
CTGCGGTCTCTCTGGCGGTACTACTTCGTCGACACCGACGCGCTGATCTT
CATGGTGGACTCTTCCGACGAGGCTCGCATCGAGGAAGCGAGGGACGAGA
TGTTTCACGTTCTTCGGGACCCCAACATGGAGGGCTGTCAGACTGTCCTC
ATCATGCTCAACAAGCAGGTGGATCTGCTGCTTGCTGTAGTACTACTGCT
GCTGCTGTAGGCCCGTTTTCGAAGTTTATTTCAAAACAAGGAGTTAAATC
TACCGGCTTTTTAGGACGGTTTCGTCAGGGCATGGCGGCGAAGAAGCGAT
TGCCTCGTGCAAGACGGACGACCTCCTCATCGTCCTCACCGGCGTGTGTA
TCCCTTCCCCATCGGGTGTTGCGAAGCACTGCCGGTGTACTCTGCGCCCC
TGGTGTACCCGGTGCTGTTGGCAGCATGAGCATGACATGTAGTCCCCTTG
CCGAAACCTGCGTCGCCCCTAAACGTTGCTAGGACGTCCCCGGTGCAGTC
GGTCCCGGCATCGTGATCGACAGGATGGGTCTCAACAGCGCGGGTGACAA
CCCACTGAGAGAACGCAACTGGTACATGCAGGTCAGTTCACGCTGCCAGA
GTCGAAAAGGTCACCAGATATGGGTGGGTGTGGCATCAACATCGTGCACG
CTTCGCGTTGTCGCAAACGAGCGATTTTTCGTCACCATCAGAACGCTCCC
AGGCTATTACGTAGATGGCACCAATACCACCGACTAACGTGAAAGTGGTG
GGTGTGCGCTGTGTTGATCTCGGGAAGACCGCGGGGTTACGGTACGGTAG
TGCTGTCAAAGCTCAGATGGACGCGTTCGTTCGTTCCGTGGAAGGCAAAC
ATGGCATGATCAGTGTCTCGCGTGAAGGGTGTTACAGCCATCTTGCAAGA
CTTTTATCTTTCGAGTGACGACGCTCCGTCTCCATCTTTGCGGCGAAGCA
TACCAACCTCGTTTCGCAGCCGTAAAAATGGTCGCCCTGTAGAAATGCAT
GACAATCGATGAAAGTCTGTTAATGAGGGGGGGTACTCATCGTCGTGCAT
GCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGA
GCACGCTGGGTGTTTACCGGACCAGGCTCTCACATCACCAAGCGCGAAGC
GCCGTGACGTATTCGGCGAGCCGCATGAAGGAGGGGGGGCAACTAGACCT
TGTGTTGCGAGCTTCGTGGGAGTTGGAGTCGTGCTAGCCGACCGGCGGGG
CACCTACGATCGGTCGCTCGAACAACAACACCCACTAGACTCGGGCTACC
GCTCGCTGTGCATTTTCAGCCTTTTCGTGTTCGCGTATTATGCGCGCGCA
TCCCCGCCAGCCCGCAGGCAGGCTTTGCTGGTGCATAGTGTACCCCCCTT
TGGAGCAGTCGACTTATGACCACGGAAGGCGTCCGTGTCAGTTGGACCAG
TACGGACATTAGAAGGTACTGAGCGGAGACCGGATCGATTTTTAGTGTGA
AGACAACATTAACAACAACAACTACAACAATAGTGCACGCGTGCGTGTCT
CTTAAGTTGTCGTTCCTCTTTTTGTTGTTGCTGTGCACCGCCTCCTCGTG
TGCGTCGCGACAGAGCTGCTGTGCCCTCACGGGCGAGGGGGTTTTCTATG
GGCTCGACTGGCTGTGCGAGGCGCTCAAGAAGAAGAACAAGAGGGGGGCG
AAGAGGTAACGAACGCCCGACCGATTGATTCGACGGGGACAAGATATACG
ACGAGATCCAGAAGAACCCGTCGGAACTAAAGAAAAAGCCTCCGTTGTGT
GCAGGAGAAATGTTCCGCACAAGCGTGACCAAGAAGAATGATAACTTCCT
TGCGTTTTTTTTTCTCACCCCCCACCGACGAGGTTTCGTTGGAGAGAAAC
TCTAGTTTAACGTTTGTCTCGGGGTGTGTGTGTGTGTGACGCGTCCTTAA
TAGTGCATCGTTTTGTTTGCACCCCGTGTAAGGGATATGTAGGTCTCACG
GTGCATTCGAAGACTTTTCGTTGGCGCTGAGGCACGTAGAACGCATCAGG
AAGAACACCTTCTCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:272136..278101-

>mRNA_E-siliculosus-1a_M_contig90.17137.1 ID=mRNA_E-siliculosus-1a_M_contig90.17137.1|Name=mRNA_E-siliculosus-1a_M_contig90.17137.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1164bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:272136..278101- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGCATGTGGTCTCTCGTCTCGTCCACATCCTCGGCACCCTCAAGAT
GGGGCATGTGGTCTCTCGTCTCGTCCACATCCTCGGCACCCTCAAGGAAA
AGCGCCTCCTGCTACTCGGGCTGGACAATGCGGGCAAAACTTCGCTCTTG
GAAAAGCGCCTCCTGCTACTCGGGCTGGACAATGCGGGCAAAACTTCGCT
CTTGTACAATCTCCACCTGAACGAGGCCGTGGGCACCGTTCCTACCGTTG
GGTTCAACATGGAACAGGTCGAGTACAACAACATGGTCATGACTATCTGT
ACAATCTCCACCTGAACGAGGCCGTGGGCACCGTTCCTACCGTTGGGTTC
AACATGGAACAGGTCGAGTACAACAACATGGTCATGACTATCTGGGACGT
CGGCGGCCAAGCCAAGCTGCGGTCTCTCTGGCGGTACTACTTCGTCGACA
CCGACGCGCTGATCTTCATGGTGGACTCTTCCGACGAGGCTCGCATCGAG
GAAGCGAGGGACGAGATGTTTCACGTTCTTCGGGACCCCAACATGGAGGG
CTGTCAGACTGTCCTCATCATGCTCAACAAGCAGGGACGTCGGCGGCCAA
GCCAAGCTGCGGTCTCTCTGGCGGTACTACTTCGTCGACACCGACGCGCT
GATCTTCATGGTGGACTCTTCCGACGAGGCTCGCATCGAGGAAGCGAGGG
ACGAGATGTTTCACGTTCTTCGGGACCCCAACATGGAGGGCTGTCAGACT
GTCCTCATCATGCTCAACAAGCAGGACGTCCCCGGTGCAGTCGGTCCCGG
CATCGTGATCGACAGGATGGGTCTCAACAGCGCGGGTGACAACCCACTGA
GAGAACGCAACTGGTACATGCAGGACGTCCCCGGTGCAGTCGGTCCCGGC
ATCGTGATCGACAGGATGGGTCTCAACAGCGCGGGTGACAACCCACTGAG
AGAACGCAACTGGTACATGCAGAGCTGCTGTGCCCTCACGGGCGAGGGGG
TTTTCTATGGGCTCGACTGGCTGTGCGAGGCGCTCAAGAAGAAGAACAAG
AGGGGGGCGAAGAGGTAAAGCTGCTGTGCCCTCACGGGCGAGGGGGTTTT
CTATGGGCTCGACTGGCTGTGCGAGGCGCTCAAGAAGAAGAACAAGAGGG
GGGCGAAGAGGTAA
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