mRNA_E-siliculosus-1a_M_contig90.17131.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17131.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17131.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17131.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 8.120e-101
Identity = 273/276 (98.91%), Postives = 273/276 (98.91%), Query Frame = 1
Query:  115 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFDSLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 942
            MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFD LVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAA XXXXXXXXXXXXXXXXXXXXXXXXXAA XXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFDGLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAARXXXXXXXXXXXXXXXXXXXXXXXXXAAAXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 276          
BLAST of mRNA_E-siliculosus-1a_M_contig90.17131.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 9.040e-96
Identity = 256/276 (92.75%), Postives = 258/276 (93.48%), Query Frame = 1
Query:  115 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFDSLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 942
            MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKR SAARTLNMAADPRFDSLVDRVETAAKAP ES+PVFKSQEADAPATIAEVKEQV  XXXXXXXXX            AYDSAVSVGSVGLQV EGLAVLAAVPAILTALNKQKATQERK+KNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAA XXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRLSAARTLNMAADPRFDSLVDRVETAAKAPVESVPVFKSQEADAPATIAEVKEQVAPXXXXXXXXXRPPSVLAAGSGQAYDSAVSVGSVGLQVVEGLAVLAAVPAILTALNKQKATQERKEKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAARXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 276          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKJ5_ECTSI8.120e-10198.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMY3_9PHAE9.040e-9692.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:235794..244193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size2202
Model size2202
Exons9
Ec32 orthologEc-16_003190.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936418.9738922-CDS-E-siliculosus-1a_M_contig90:235793..2360951622936418.9738922-CDS-E-siliculosus-1a_M_contig90:235793..236095Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 235794..236095 +
1696251069.8184135-CDS-E-siliculosus-1a_M_contig90:235793..2360951696251069.8184135-CDS-E-siliculosus-1a_M_contig90:235793..236095Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 235794..236095 +
1622936418.9946847-CDS-E-siliculosus-1a_M_contig90:237709..2378391622936418.9946847-CDS-E-siliculosus-1a_M_contig90:237709..237839Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 237710..237839 +
1696251069.828614-CDS-E-siliculosus-1a_M_contig90:237709..2378391696251069.828614-CDS-E-siliculosus-1a_M_contig90:237709..237839Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 237710..237839 +
1622936419.0097382-CDS-E-siliculosus-1a_M_contig90:238318..2384631622936419.0097382-CDS-E-siliculosus-1a_M_contig90:238318..238463Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 238319..238463 +
1696251069.8393188-CDS-E-siliculosus-1a_M_contig90:238318..2384631696251069.8393188-CDS-E-siliculosus-1a_M_contig90:238318..238463Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 238319..238463 +
1622936419.0298629-CDS-E-siliculosus-1a_M_contig90:238979..2391431622936419.0298629-CDS-E-siliculosus-1a_M_contig90:238979..239143Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 238980..239143 +
1696251069.8566625-CDS-E-siliculosus-1a_M_contig90:238979..2391431696251069.8566625-CDS-E-siliculosus-1a_M_contig90:238979..239143Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 238980..239143 +
1622936419.051231-CDS-E-siliculosus-1a_M_contig90:239747..2398071622936419.051231-CDS-E-siliculosus-1a_M_contig90:239747..239807Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 239748..239807 +
1696251069.868991-CDS-E-siliculosus-1a_M_contig90:239747..2398071696251069.868991-CDS-E-siliculosus-1a_M_contig90:239747..239807Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 239748..239807 +
1622936419.0702035-CDS-E-siliculosus-1a_M_contig90:240492..2405751622936419.0702035-CDS-E-siliculosus-1a_M_contig90:240492..240575Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 240493..240575 +
1696251069.8815022-CDS-E-siliculosus-1a_M_contig90:240492..2405751696251069.8815022-CDS-E-siliculosus-1a_M_contig90:240492..240575Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 240493..240575 +
1622936419.084946-CDS-E-siliculosus-1a_M_contig90:241127..2422771622936419.084946-CDS-E-siliculosus-1a_M_contig90:241127..242277Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 241128..242277 +
1696251069.89793-CDS-E-siliculosus-1a_M_contig90:241127..2422771696251069.89793-CDS-E-siliculosus-1a_M_contig90:241127..242277Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 241128..242277 +
1622936419.1017065-CDS-E-siliculosus-1a_M_contig90:242785..2428691622936419.1017065-CDS-E-siliculosus-1a_M_contig90:242785..242869Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 242786..242869 +
1696251069.912104-CDS-E-siliculosus-1a_M_contig90:242785..2428691696251069.912104-CDS-E-siliculosus-1a_M_contig90:242785..242869Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 242786..242869 +
1622936419.118145-CDS-E-siliculosus-1a_M_contig90:244109..2441931622936419.118145-CDS-E-siliculosus-1a_M_contig90:244109..244193Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 244110..244193 +
1696251069.9253497-CDS-E-siliculosus-1a_M_contig90:244109..2441931696251069.9253497-CDS-E-siliculosus-1a_M_contig90:244109..244193Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 244110..244193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17131.1prot_E-siliculosus-1a_M_contig90.17131.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 235794..244193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17131.1

>prot_E-siliculosus-1a_M_contig90.17131.1 ID=prot_E-siliculosus-1a_M_contig90.17131.1|Name=mRNA_E-siliculosus-1a_M_contig90.17131.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=734bp
LLSTAILLYPGDSCCAQRERNRPLVVRPLLSAVFPEKNMGKSGRTLLVAL
LALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFD
SLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVAPAATKVVAEQR
PPSASAAGSGQAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQ
ERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAR
IEEERQESVRQMVLEAQVKKQAEEAAAAKVAAEEAAAEKAASDARREASR
KEREIRMAAKAAEEAKAAEEAKAKQEAAAAKAAEEAKAAEEAKAAEEAKA
AEEAKAAEEAKAAEEAKAAEEAKAAEEAKAAEEAKAAEEAKAAEEAKAAA
EAKAAEEAKAAAEAKAAEEAKAAAEAKAAEEAKAAAEAKAAEEAKAAAEA
KAAEEAEAKAAEEAKAAAEAKAAADAKAAEEAEAKAAEDAKAAEEAEAAA
EAKAISIQLAQAEKAKAAKAAEAKAAEEAKEAEAKAISRQLAQAEKAKAA
KAAEAKAAEEAKEAEAKAISRQLAQAEEAKAAKAAEAKAAEEAKEAEAKA
ISRQLAQAEEAKAAKAAEAKAEEEAKEAEAKAISRQLAQAEEAKAAAEAK
AAAEAKAAADAKAGEEAKAAADLKAKQEAQEKEAKAPAEAMAAKVENEQE
APVRPSSLPPSDARSVFFREWYSAGLRGADDGAF
back to top

mRNA from alignment at E-siliculosus-1a_M_contig90:235794..244193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17131.1 ID=mRNA_E-siliculosus-1a_M_contig90.17131.1|Name=mRNA_E-siliculosus-1a_M_contig90.17131.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8400bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:235794..244193+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCCTGTCTACTGCTATCTTGCTGTACCCGGGTGACTCCTGTTGTGCCCA ACGAGAGAGAAACAGGCCTCTTGTTGTGCGCCCCCTTCTTTCTGCCGTCT TTCCAGAGAAAAACATGGGAAAGTCAGGGCGGACGCTGTTGGTGGCGCTC CTTGCGCTGCTGGTGTCGCCGGATGTGCTGGGCTTCAGCTTGAGCCCGGC GGGAGCGCGCAGATCAAGGCAGCAGCACCAACGGGCACCTAGGGGGAAGA GGTCGTCAGCGGCGAGGACCTTGAACATGGCGGCAGACCCGCGCTTCGAC AGGTGAGCTCGGCCTTCTCCGCACGCCGGGTAGCGGTGTCATTGCATGAG TAAGACCATGTGGGGAGTTTGTATGTGTCGACACGTCGGCCGCACGATTT TCAGGAGGAGCGTTCATGTGCCCGCTTGCATTCGGCCGGGGGTGTTGTGC TTGTGTCGTTGCGCCCTCCTGAGTATCACGGCTGTCCTGCGTGCCGCGTG CGTCACATAAGCGGGCGTCTGTCCCGAGGCAAGTCATGCACGATTTTGTT TCGCACATGTCTGTTGATTGTCCATTCAACAACACTCGACTGCTACAATG TAGTAGTCGCCTTGCAGCTGTCCTTGGGCGCTCCTACACAGCCGCTCGAG CGCATACGGGACCATATGGCAGCGATCTATTTACATTGCAGACGCATGTT ACAACTTGGGGCGACCGTAACCAAATCACTAAGATTTGTCTTCGTTTCGG GTTTACCCGCTTTCTGCCTGCTCACAGCAGCAGTGACCCCCATGGCAACC CGCGTCTCCTTAGAACAGCAAGCACATTTACACACACCGGCAAAATAAAT GTGAAGGTGAATATCGTACATATCTACAACTCAACGTACAGCGCGGAGTA GCCTGTTATCAAGGGCTGCTGCGTTGATCGCGCTGAGTACATGCGACACG CCGACGGCCAATTCGAGCGCGCGGACAGGGGTGGTTGATATACCTTCGAA TCTTAGCTAAAAAATTGCCGGTTGCGGCGACAACAGAGGCGTAGTCGCAT GCACCATCTCACCCCCCACAAGAAAAATACTTCGAATGGAAAATAGTCCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAATCCCGCCTGCGGGTGT GTGAGACACGCATTCTTAACTCTGAAAGGTCTCTCTGCGTACATAGCCGA CCACAAGCACCATCAAAACGCGTGCGGATAGACGGTCAGTGGGGGTGTTG CAGAGAGCATAGCGGGATACTGACGCTCCGCCGGAGGCTTTTGTTGGGTA CTACAGCGTGTGATGGGTTTGTTCCTGCATCTCTCGCAGGTGGGAGTTGC GATTTGTCCTTAACGGTGATGAAACCCTACACCCCAGCAGGCTCGAGGTG TTCATGCGCGGTCGCTCACGAGTTTCTACGCACCCTATTATAGACGGCGT TGCTTCTCTTGCTGGAAGCTCCGATCCGTTCTTAGCTGACGGCCTGATTT TTTATCGTTCAAGTTGCACCTATTTTGAACACCCAATTTCAATGACCCTT GGGACTGCTGCCTCGCGGCACGCGACCGGCCGTTGGCTTTGGACATCGAA CATTTTGAGTACATAGCAACTTCTACAGCAACCCACCTAGCGCTCAAAGT TAATGTTGACACGCTAGCAGAAATAATTCCCAGCTGCGGGCGGTGGGCGA TGTGGGTGCCGCACGGCCATCGTGCCAACCGCATGCGGTCCAGCGAGCGG TAATGCCAAGAACACGAGGTCAGTTGATGGGAGGTGGGAAAGGGACGTAG TCCCAACTCCGGGAACCTCTATTTGGGTGCCATTTGTTACCATTTGAGGC CTGACCACGTATACACCCCATCTAAACACTTGTGGCCCTCCCCTGTGTCG CCCCCCGAAACGAAAGCCTCGTCGATCGCGTGGAAACCGCGGCGAAGGCC CCAAGGGAATCCATCCCCGTTTTCAAGAGCCAGGAGGCGGACGCGCCCGC CACAATCGCGGAGGTTAAGGAGCAGGTGGCCCCAGCAGCAACGAAGGTGA CAGCGGTCGTCGCCTGTTCGTAGTCGAACGCTTGCAATTTGTGATTGTTT TCAACGCAGCTCTTTTTTTGTTGACGCGCAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAAGAGGCCGGCGCCTGCGAAATGGGGTGCTGCTGCCATACC ACCCCTTGTGTGCTTGACTCCCGACGGCTCTTCGCACACCCTGTTGGTTG GCGGATAGTTTCCAGTTATTCGAGCGGTTTTTAGGGCGGTTCCCTTTTTT TCGAAGCATGGGTACAATCCCTTGGAGAAACGTGTGCATTCTCGTTCGAA ACATGGGCTGCTGCTGTGCTCGGGCCACAGAGCTTTTTCTCCAAAAACTG ATGATCGAGAGCAAGAAACGCGCGGGTAATCGGTCGCCAAAATTGTTTGT CCCACACAATCCTTCAACCGTATTTTTTTTGGACGATTTGCGACAACCGC TGCCCGCGCGCGGTGTCTGGTCCAGGTCGTCGCGGAGCAGCGACCCCCCT CAGCTTCGGCGGCGGGTAGCGGCCAGGCCTACGACAGCGCCGTGTCCGTC GGGTCGGTGGGGCTGCAGGTGGCGGAGGGGCTCGCGGTGCTGGCCGCCGT CCCTGCCATCCTCACTGCTCGTGAGTTGTTGTTGCCCCCTAATAGGCGTT GTGATTGCTGATTTTTGTGTGGTAGGTGCGTCGCGCGTTGTGATTGGTGT TGAGTTTTTCTGGCCGCTCGTTTCGTGTCGCGACGGCTGTTGTCTCCGTC GGTCTTGTGGGCTGCAGACGGGCGGGTTTTTCTCTGGCACGTGTTGGTAT GGTGCCAGAAATGGGGGGTAGTGAAGCATTTGCCGCGGGCGGGCCTTGCT GTTGTCGCGTCTGGAAGCGAAGCGAACGCTACCGCTCAAGGCAAAGCAGT GGTGGGACCGGCGACTATCAAACGCTGCCTACCGTCTCATGAACAAATTT CACCCACTACAACCTTTTTCTCAGCGCATGTAGCTCAACGCGACCCACTC CTCAGCCGCGCCGCACCGCACCCAACCCGGCTCCTCACCAGCAACACCCG CGCACCTAACCAACGAAAACTCTCGCGCGGTTAACAAGACCTAACCGCAC CGTACCGTCTGCAAATCGCCCTAAACTCTCGCGCAGTGAACAAGCAGAAG GCGACGCAGGAGCGTAAGGACAAGAATCAGGCAAGGGCCGACGAGCTCGC CAAGGGCCGTCAGGCCAGGGCAGATGCCAAGGCGGCCGCTCTCGCCCAGG CCGCCATCGACCGCAAGGAAAAGCAGGAGGGCATCGCCCAACGCATCGAG GTTGGTTTTGAGTTTTTTTTCGCACATGTACGAGACGGTGGTGATAGCTG CTGCGTGAAGCGGATTTGGAGTTTAGGTGTTGCCACTTGAGACAAGACAC ACGCCTGAGACTGGGTTGCGCGCGAGTGGGCGAAGCAGAGGCAACACCAG AGAATATTTATTTGGCGTGCTATGACCGAACCTGCTCAAGGATGTTTGCG CCTCGCTTCAAAACCATTAGTAGGGCGGAATGGTGTATTTTTTTTAACAG AATGTCAGGATATGTCTGCTCTCATCTTCCCGCCCACCCACCCCTCCCCC CTTTAGTCATTCTATTGGCGTTGTGTGGCATGCCGTGATTTATCGATTTA TCTACACCAAAGGGGCGATGGAAGGGTTGGCGGAGCAAACAAGGCATGGG AGTGGGCATCAACGATGATCCTCCAGATCGTCCTCCTCGATATGCGCATG CACCATTCGGCGCACTTGTAAATAGCGCCGTCGACTTTTTGCCAACTCTC GCCCGCTGTCTGGCGCGCTCTCCCGTTAACGTTCCTTGTCTCCGGCCGTT CCGTTCCCGTCCTCCAACCTATCGTTCTGTCGCTGCCGCCGCCGGTACAA ACAGGCGGCGCGCATCGAAGAAGAGCGGCAGGAATCGGTCAGGCAGATGG TCTTGGAAGCCCAGGTGCGTTTATAACGGGCTACGGCCACATCGGCAGTA CGGCCGACCTATCTCCAGCGCGCGTTCGGAATCATGTTTTTGCCCAGAAT TTTTTTCCGCACATGGCCGGTACTACTGCTGTACATCACGCGGATTGTGT TGTTTTGTTGTTTTTCTCACATTAGCTCTATAGGCCACAAAAATGGGGAG CTCGTGGTCGCAAAAAACCGGCACATACGACGCCGCGGGGAAACTAAACA ACAATAGGGTGCAAACCACTCGGAAGAAGAAAACAAAATGATAAAAAAGA AAAGAACAGCCACGCCACCGACCGGTCGAGAAAAGCGCCCTAGGAAACCG ATCAAAATAAAACAAAGAGTGCATGGAACCATGAGTGTTCGGCGACGCGC TTGATTCCTTTTCGATTTGCTCCTGTGGGGGTCTTGTGCCCGCTCACTGT ACATGACGCGGAACGTTGTGGTGACATCGTGAGTGTTCGGCGACGCGCTG GATTATTTTTGGATATGTGCTCTGTGGACCTTAGCGCCGACACCGCCGCC GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAATTCTGTTGTACCTT TTTTGGTCCGTGTCGCTGCCGCTTCTGTCGCTAACGCTGCTGCACCTTTT TTTGGCCTTGTGCTGCATGCTTGCCGCGTGATGTACGGTATGCCGCCAGG TGAAGAAGCAGGCTGAGGAGGCAGCCGCTGCTAAGGTTGCCGCCGAGGAA GCGGCTGCCGAGAAGGCGGCGTCGGATGCTAGGTCAGTCAGCCCGTTTGC GGCTCCCGTCGACCCGTTTTGCACGTGTCTCGTGGACAATCGGCGTTGTG TTGTCAAGTGTGATGCCGATCGTGTTGTCGAGTGCATGTGTGTCTTTGTT GCTAGCCTCGAACGCGCTAACCGGCTGACCAACGAAACTGCGTCAGTGCA AGTTGGTGAATATCAAGGTCCTGCAAGGGGGGCCAAAATTCGTGTGTGTG TTTTGCCTGGCACCGGTCTACGTACGCACCTCTCAGTATGCCATGCGTGT TTGGCGCACACATCGGCCGGGGTCACAGCGGTCGAGGGCCATGTGTGTAT CGATGCTGGTTCTTTTTAGCAGTATGGCAGCATGATTTTTTTTTGGTGAT GCGGCTTGGGTCTTCTCGCGTTCGACAAAGGAACGGGTGACCCAACCGTA TGTATATTTTTTCGCTGAGGGCTGTGTCTCCACTCTAACCCGAAGTCACA GATCTTCAAAAACCCGCCAACCCATTGCACTCTTGGCAAGACCGCCGAAA TTGGCCGACACAACGCTTCCCTCTACTTTGATAGGAGGGAGGCTAGCAGG AAGGAACGCGAGATCAGGATGGCGGCGAAGGCCGCTGAGGAAGCCAAGGC TGCGGAGGAAGCCAAGGCAAAGCAGGAAGCCGCGGCCGCTAAGGCTGCTG AAGAAGCTAAGGCTGCGGAGGAAGCTAAGGCTGCGGAGGAAGCCAAGGCT GCCGAAGAAGCCAAGGCTGCTGAGGAAGCCAAGGCTGCCGAAGAAGCCAA GGCTGCGGAGGAAGCCAAGGCTGCCGAAGAAGCCAAGGCTGCCGAGGAAG CCAAGGCTGCCGAAGAAGCCAAGGCTGCGGAGGAAGCCAAGGCTGCAGCG GAAGCTAAGGCCGCCGAGGAAGCCAAGGCTGCAGCAGAAGCTAAGGCCGC CGAGGAAGCCAAGGCTGCAGCGGAAGCTAAGGCCGCCGAGGAAGCCAAGG CTGCAGCGGAAGCTAAGGCCGCCGAGGAAGCCAAGGCTGCAGCGGAAGCT AAGGCTGCTGAAGAAGCCGAAGCCAAGGCCGCCGAAGAAGCCAAGGCCGC CGCGGAAGCAAAGGCTGCTGCGGACGCAAAGGCTGCTGAAGAAGCTGAAG CCAAAGCTGCTGAAGATGCCAAGGCTGCTGAGGAAGCCGAGGCCGCCGCG GAAGCCAAGGCTATATCTATTCAGCTGGCTCAGGCTGAGAAAGCCAAGGC CGCCAAGGCTGCCGAAGCCAAGGCTGCCGAAGAAGCTAAGGAAGCTGAAG CTAAGGCTATCTCTCGTCAGTTAGCTCAGGCTGAGAAAGCCAAGGCCGCC AAGGCTGCCGAAGCCAAGGCTGCCGAAGAAGCTAAGGAAGCTGAAGCCAA GGCTATCTCTCGTCAGTTAGCCCAGGCTGAGGAAGCCAAGGCCGCCAAGG CAGCGGAAGCCAAGGCTGCCGAAGAAGCTAAGGAAGCTGAAGCCAAGGCT ATCTCTCGTCAGTTAGCCCAGGCTGAGGAAGCCAAGGCCGCCAAGGCAGC GGAAGCCAAGGCTGAGGAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCT CTCGTCAGTTAGCCCAGGCTGAGGAAGCCAAGGCTGCAGCGGAAGCCAAG GCCGCTGCGGAAGCAAAGGCTGCTGCGGACGCTAAGGCTGGCGAAGAAGC TAAGGCTGCGGCGGACCTGAAGGCGAAGCAAGAGGTGGGTGCGTTTGTTC TCGTTTCGGCGGCGGAGGCTTCTCTTTCTTCATGCTGTCCACAGGAAGCC AACTAATTGTTTCCGCGCGGGGGGCAGGGGGGCAGCGCACCACCTCCACG GCAAACCCATTCCCCTGCCTCAGATATTTGTCTTCACTTGTTTTTTAACA GCTGATTGTGCCAAGCAGATCACGCCCGTCAGTGCTGGGCATTCTATGCA ACTAATCGTTTCGCACATTCTTTCGAGCGCTGGCTGCGGTCGCAATCAAC ACCACGTCACCTCAGCCACCCAAGATACCGTATCGCCATTTTTTTTTTTT TTATGTGTTTGATGTGTGTTTTTTCCTGTACTGTTTTTTTCCGGGTGCTG CGGTCTCAATCGACAGGATATTCACCGAAGGCACCGCTCTTCTGTTCATG TGTATTGTCACTTTTTACTTTCCTGTGAGTATATAACTTGTTGACAATTC GCCCGAAACACTCCATGGTTGGTTGGTCTTTGCCATTTCCAGGCCCAGGA GAAGGAGGCCAAGGCCCCTGCCGAGGCTATGGCCGCCAAGGTCGAGAACG AACAGGAAGCGCCGGTAAGACCAAGCGTGCCTCATCGCGGGGTCGCCACG AGATGCCCAGAGGACTGGCTTTGCGGGGGGGTTTATTGTTTGTCTGTGAA ATACAGATTGGGGGTTTCGTATCCCAAACCCCAGTTCACACCGACACTGT CTCCTAAATTTATTTGAGTGTACCTTCTTAGGGTAAGTTACCTGTGACCA CGGGAATCGACCGCGTCAAGTGTTGGATCGGTACGGACGTATGAAGGTAC TGAGTAGAGAGAGATCAGAACGGTTTTTAATGTGAAGACAACAACAACTA AAACCAAGCTTGAATGCCCTCGCGAAGGGTGCTGTGCCCAGAAGGAGGGG GGGTGCGATAGGCGAGTCATTTTTTGTGCACAGCACACGAAAGCGGTGCC TCTTTTGAGGAGTAGGCAAGGCGATGATGATACGGCAGTAGTCTGCGCGA GGGCGTCAAGCTTGGTTTTGGTTGGGGGTTAGGGATAGGGGTACGAAAAA ACCCTCTCTATTTCATAGATTGATAGTATTATCCCCACGAAGGCGGCCGT GGTGGCGTGTTTCGACAGGGGGTGCGTGTTGGGTCGTCAAAAGGCCAGGA TACGCACAGGTAACGCCCGCCGCCCTATCGCCGGCCAAGCGTGACCCTGG CACATGTCGGTTCGTCGTCGCCCCTCGTTCATAGTGTGGTACTGCATATT GCTGAGAGTCTGACGCTTTGCCCGGTTCCATGCCACTCCGACAGGGACAG ATGAATACTTTCGGCTCGAACACCTGCGCGCTGAAGAGCGATGCATGCCG TTGGCCGTTGCCTTTGGTTCCCCCCCTCCCCCCTCCTTTGTAGGGATGCG AGGTCAATGGCCTAACGACTACGGCATGCACGACTATGAGTACACCCCCC CTCCCCCCCTCGCTCCGCTCCTCTTGCCCTTCCTGCCGAACCTACCCCCC CCCCCTCTTCGGCGTGGTCCTCTCCTTGCCAGGGGGCTGCTGGCTTGACG GCGAGGAAGCTGCGCGCGCAGCAGAACGCCCGCACCGCAGCCGAAGCCGA GGCCAAGTCGGCGGCCTCCGCACCCAAGCACCCCCAGGGCGCCTGGAGCA ACGGGGCAGCGGCGGCGGCGGCGGCGGGGGACGGCGTTGAGGCGGACGGC GGGAGCGCGGGCGGGGCGGCGGCGGAGGTGGCGCCTTTGCCGGTGCGTGC TCCGTCTGGGCCTGTCGCCCCTCCTTCGTGAACGCTGTCTTTCTCCTGTC CGGTGTTTTTCGTTAGTCCCTACCCCCCTCCGACGCGCGGTCTGTGTTTT TCCGGGAGTGGTACTCGGCTGGCTTGCGGGGGGCGGATGATGGGGCATTT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:235794..244193+

>mRNA_E-siliculosus-1a_M_contig90.17131.1 ID=mRNA_E-siliculosus-1a_M_contig90.17131.1|Name=mRNA_E-siliculosus-1a_M_contig90.17131.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4404bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:235794..244193+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCCTGTCTACTGCTATCTTGCTGTACCCGGGTGACTCCTGTTGTGCCCA
ACGAGAGAGAAACAGGCCTCTTGTTGTGCGCCCCCTTCTTTCTGCCGTCT
TTCCAGAGAAAAACATGGGAAAGTCAGGGCGGACGCTGTTGGTGGCGCTC
CTTGCGCTGCTGGTGTCGCCGGATGTGCTGGGCTTCAGCTTGAGCCCGGC
GGGAGCGCGCAGATCAAGGCAGCAGCACCAACGGGCACCTAGGGGGAAGA
GGTCGTCAGCGGCGAGGACCTTGAACATGGCGGCAGACCCGCGCTTCGAC
AGCTCCTGTCTACTGCTATCTTGCTGTACCCGGGTGACTCCTGTTGTGCC
CAACGAGAGAGAAACAGGCCTCTTGTTGTGCGCCCCCTTCTTTCTGCCGT
CTTTCCAGAGAAAAACATGGGAAAGTCAGGGCGGACGCTGTTGGTGGCGC
TCCTTGCGCTGCTGGTGTCGCCGGATGTGCTGGGCTTCAGCTTGAGCCCG
GCGGGAGCGCGCAGATCAAGGCAGCAGCACCAACGGGCACCTAGGGGGAA
GAGGTCGTCAGCGGCGAGGACCTTGAACATGGCGGCAGACCCGCGCTTCG
ACAGCCTCGTCGATCGCGTGGAAACCGCGGCGAAGGCCCCAAGGGAATCC
ATCCCCGTTTTCAAGAGCCAGGAGGCGGACGCGCCCGCCACAATCGCGGA
GGTTAAGGAGCAGGTGGCCCCAGCAGCAACGAAGCCTCGTCGATCGCGTG
GAAACCGCGGCGAAGGCCCCAAGGGAATCCATCCCCGTTTTCAAGAGCCA
GGAGGCGGACGCGCCCGCCACAATCGCGGAGGTTAAGGAGCAGGTGGCCC
CAGCAGCAACGAAGGTCGTCGCGGAGCAGCGACCCCCCTCAGCTTCGGCG
GCGGGTAGCGGCCAGGCCTACGACAGCGCCGTGTCCGTCGGGTCGGTGGG
GCTGCAGGTGGCGGAGGGGCTCGCGGTGCTGGCCGCCGTCCCTGCCATCC
TCACTGCTCGTCGTCGCGGAGCAGCGACCCCCCTCAGCTTCGGCGGCGGG
TAGCGGCCAGGCCTACGACAGCGCCGTGTCCGTCGGGTCGGTGGGGCTGC
AGGTGGCGGAGGGGCTCGCGGTGCTGGCCGCCGTCCCTGCCATCCTCACT
GCTCTGAACAAGCAGAAGGCGACGCAGGAGCGTAAGGACAAGAATCAGGC
AAGGGCCGACGAGCTCGCCAAGGGCCGTCAGGCCAGGGCAGATGCCAAGG
CGGCCGCTCTCGCCCAGGCCGCCATCGACCGCAAGGAAAAGCAGGAGGGC
ATCGCCCAACGCATCGAGTGAACAAGCAGAAGGCGACGCAGGAGCGTAAG
GACAAGAATCAGGCAAGGGCCGACGAGCTCGCCAAGGGCCGTCAGGCCAG
GGCAGATGCCAAGGCGGCCGCTCTCGCCCAGGCCGCCATCGACCGCAAGG
AAAAGCAGGAGGGCATCGCCCAACGCATCGAGGCGGCGCGCATCGAAGAA
GAGCGGCAGGAATCGGTCAGGCAGATGGTCTTGGAAGCCCAGGCGGCGCG
CATCGAAGAAGAGCGGCAGGAATCGGTCAGGCAGATGGTCTTGGAAGCCC
AGGTGAAGAAGCAGGCTGAGGAGGCAGCCGCTGCTAAGGTTGCCGCCGAG
GAAGCGGCTGCCGAGAAGGCGGCGTCGGATGCTAGGTGAAGAAGCAGGCT
GAGGAGGCAGCCGCTGCTAAGGTTGCCGCCGAGGAAGCGGCTGCCGAGAA
GGCGGCGTCGGATGCTAGGAGGGAGGCTAGCAGGAAGGAACGCGAGATCA
GGATGGCGGCGAAGGCCGCTGAGGAAGCCAAGGCTGCGGAGGAAGCCAAG
GCAAAGCAGGAAGCCGCGGCCGCTAAGGCTGCTGAAGAAGCTAAGGCTGC
GGAGGAAGCTAAGGCTGCGGAGGAAGCCAAGGCTGCCGAAGAAGCCAAGG
CTGCTGAGGAAGCCAAGGCTGCCGAAGAAGCCAAGGCTGCGGAGGAAGCC
AAGGCTGCCGAAGAAGCCAAGGCTGCCGAGGAAGCCAAGGCTGCCGAAGA
AGCCAAGGCTGCGGAGGAAGCCAAGGCTGCAGCGGAAGCTAAGGCCGCCG
AGGAAGCCAAGGCTGCAGCAGAAGCTAAGGCCGCCGAGGAAGCCAAGGCT
GCAGCGGAAGCTAAGGCCGCCGAGGAAGCCAAGGCTGCAGCGGAAGCTAA
GGCCGCCGAGGAAGCCAAGGCTGCAGCGGAAGCTAAGGCTGCTGAAGAAG
CCGAAGCCAAGGCCGCCGAAGAAGCCAAGGCCGCCGCGGAAGCAAAGGCT
GCTGCGGACGCAAAGGCTGCTGAAGAAGCTGAAGCCAAAGCTGCTGAAGA
TGCCAAGGCTGCTGAGGAAGCCGAGGCCGCCGCGGAAGCCAAGGCTATAT
CTATTCAGCTGGCTCAGGCTGAGAAAGCCAAGGCCGCCAAGGCTGCCGAA
GCCAAGGCTGCCGAAGAAGCTAAGGAAGCTGAAGCTAAGGCTATCTCTCG
TCAGTTAGCTCAGGCTGAGAAAGCCAAGGCCGCCAAGGCTGCCGAAGCCA
AGGCTGCCGAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCTCTCGTCAG
TTAGCCCAGGCTGAGGAAGCCAAGGCCGCCAAGGCAGCGGAAGCCAAGGC
TGCCGAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCTCTCGTCAGTTAG
CCCAGGCTGAGGAAGCCAAGGCCGCCAAGGCAGCGGAAGCCAAGGCTGAG
GAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCTCTCGTCAGTTAGCCCA
GGCTGAGGAAGCCAAGGCTGCAGCGGAAGCCAAGGCCGCTGCGGAAGCAA
AGGCTGCTGCGGACGCTAAGGCTGGCGAAGAAGCTAAGGCTGCGGCGGAC
CTGAAGGCGAAGCAAGAGGAGGGAGGCTAGCAGGAAGGAACGCGAGATCA
GGATGGCGGCGAAGGCCGCTGAGGAAGCCAAGGCTGCGGAGGAAGCCAAG
GCAAAGCAGGAAGCCGCGGCCGCTAAGGCTGCTGAAGAAGCTAAGGCTGC
GGAGGAAGCTAAGGCTGCGGAGGAAGCCAAGGCTGCCGAAGAAGCCAAGG
CTGCTGAGGAAGCCAAGGCTGCCGAAGAAGCCAAGGCTGCGGAGGAAGCC
AAGGCTGCCGAAGAAGCCAAGGCTGCCGAGGAAGCCAAGGCTGCCGAAGA
AGCCAAGGCTGCGGAGGAAGCCAAGGCTGCAGCGGAAGCTAAGGCCGCCG
AGGAAGCCAAGGCTGCAGCAGAAGCTAAGGCCGCCGAGGAAGCCAAGGCT
GCAGCGGAAGCTAAGGCCGCCGAGGAAGCCAAGGCTGCAGCGGAAGCTAA
GGCCGCCGAGGAAGCCAAGGCTGCAGCGGAAGCTAAGGCTGCTGAAGAAG
CCGAAGCCAAGGCCGCCGAAGAAGCCAAGGCCGCCGCGGAAGCAAAGGCT
GCTGCGGACGCAAAGGCTGCTGAAGAAGCTGAAGCCAAAGCTGCTGAAGA
TGCCAAGGCTGCTGAGGAAGCCGAGGCCGCCGCGGAAGCCAAGGCTATAT
CTATTCAGCTGGCTCAGGCTGAGAAAGCCAAGGCCGCCAAGGCTGCCGAA
GCCAAGGCTGCCGAAGAAGCTAAGGAAGCTGAAGCTAAGGCTATCTCTCG
TCAGTTAGCTCAGGCTGAGAAAGCCAAGGCCGCCAAGGCTGCCGAAGCCA
AGGCTGCCGAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCTCTCGTCAG
TTAGCCCAGGCTGAGGAAGCCAAGGCCGCCAAGGCAGCGGAAGCCAAGGC
TGCCGAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCTCTCGTCAGTTAG
CCCAGGCTGAGGAAGCCAAGGCCGCCAAGGCAGCGGAAGCCAAGGCTGAG
GAAGAAGCTAAGGAAGCTGAAGCCAAGGCTATCTCTCGTCAGTTAGCCCA
GGCTGAGGAAGCCAAGGCTGCAGCGGAAGCCAAGGCCGCTGCGGAAGCAA
AGGCTGCTGCGGACGCTAAGGCTGGCGAAGAAGCTAAGGCTGCGGCGGAC
CTGAAGGCGAAGCAAGAGGCCCAGGAGAAGGAGGCCAAGGCCCCTGCCGA
GGCTATGGCCGCCAAGGTCGAGAACGAACAGGAAGCGCCGGTAAGACCAA
GCGCCCAGGAGAAGGAGGCCAAGGCCCCTGCCGAGGCTATGGCCGCCAAG
GTCGAGAACGAACAGGAAGCGCCGGTAAGACCAAGCTCCCTACCCCCCTC
CGACGCGCGGTCTGTGTTTTTCCGGGAGTGGTACTCGGCTGGCTTGCGGG
GGGCGGATGATGGGGCATTTTCCCTACCCCCCTCCGACGCGCGGTCTGTG
TTTTTCCGGGAGTGGTACTCGGCTGGCTTGCGGGGGGCGGATGATGGGGC
ATTT
back to top