mRNA_E-siliculosus-1a_M_contig90.17131.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig90.17131.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI) HSP 1 Score: 335 bits (859), Expect = 8.120e-101 Identity = 273/276 (98.91%), Postives = 273/276 (98.91%), Query Frame = 1
Query: 115 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFDSLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 942
MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFD LVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAA XXXXXXXXXXXXXXXXXXXXXXXXXAA XXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE
Sbjct: 1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFDGLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAARXXXXXXXXXXXXXXXXXXXXXXXXXAAAXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 276
BLAST of mRNA_E-siliculosus-1a_M_contig90.17131.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE) HSP 1 Score: 328 bits (840), Expect = 9.040e-96 Identity = 256/276 (92.75%), Postives = 258/276 (93.48%), Query Frame = 1
Query: 115 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAARTLNMAADPRFDSLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXXAYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 942
MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKR SAARTLNMAADPRFDSLVDRVETAAKAP ES+PVFKSQEADAPATIAEVKEQV XXXXXXXXX AYDSAVSVGSVGLQV EGLAVLAAVPAILTALNKQKATQERK+KNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAA XXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE
Sbjct: 1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRLSAARTLNMAADPRFDSLVDRVETAAKAPVESVPVFKSQEADAPATIAEVKEQVAPXXXXXXXXXRPPSVLAAGSGQAYDSAVSVGSVGLQVVEGLAVLAAVPAILTALNKQKATQERKEKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAARXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXXXXXXXXXXXXXXRREASRKEREIRMAAKAAEE 276 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig90.17131.1 >prot_E-siliculosus-1a_M_contig90.17131.1 ID=prot_E-siliculosus-1a_M_contig90.17131.1|Name=mRNA_E-siliculosus-1a_M_contig90.17131.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=734bp LLSTAILLYPGDSCCAQRERNRPLVVRPLLSAVFPEKNMGKSGRTLLVALback to top mRNA from alignment at E-siliculosus-1a_M_contig90:235794..244193+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig90.17131.1 ID=mRNA_E-siliculosus-1a_M_contig90.17131.1|Name=mRNA_E-siliculosus-1a_M_contig90.17131.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8400bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:235794..244193+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:235794..244193+ >mRNA_E-siliculosus-1a_M_contig90.17131.1 ID=mRNA_E-siliculosus-1a_M_contig90.17131.1|Name=mRNA_E-siliculosus-1a_M_contig90.17131.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4404bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:235794..244193+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |