mRNA_E-siliculosus-1a_M_contig9.17073.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17073.1 vs. uniprot
Match: D7G4J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J8_ECTSI) HSP 1 Score: 549 bits (1415), Expect = 1.910e-188 Identity = 310/366 (84.70%), Postives = 317/366 (86.61%), Query Frame = 1
Query: 544 MSTACLSATESGYFSFDQQIHTSIVPHELDAEGGIDIDYQITYGWRSSCTWARAEYTDSNGQEQAEEDSGCFGLAEKELLDDTEAVLAGGRSMDADTGLAVALGHAVAAAVSSIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGSESESGSVLSSWTGG 1641
MSTACLSATESGYFSFDQQIHTS VP ELDAEGGIDIDYQITYGWRSSCTW RAEYT+SNG+E+A+EDSGCFGLAEKEL D+TEAVLAGGRSMDADTGLAVALGHAVAAAV+SIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHP ATAAAMSGLG XXXXXXXXX PAGSESE+GSVLSSWTGG
Sbjct: 1 MSTACLSATESGYFSFDQQIHTSHVPDELDAEGGIDIDYQITYGWRSSCTWVRAEYTESNGEEKAKEDSGCFGLAEKELEDETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPPATAAAMSGLGX---------------------------------------XXXXXXXXXESASPAGSESENGSVLSSWTGG 327
BLAST of mRNA_E-siliculosus-1a_M_contig9.17073.1 vs. uniprot
Match: A0A6H5JHQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ9_9PHAE) HSP 1 Score: 192 bits (488), Expect = 5.040e-52 Identity = 110/127 (86.61%), Postives = 110/127 (86.61%), Query Frame = 1
Query: 1102 VIDVTIMVVVGMLACQDEEVDAAIATPQ----------------YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLGAG 1434
VIDVTIMVVVGMLACQDEEVDAAIATPQ YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLG G
Sbjct: 12 VIDVTIMVVVGMLACQDEEVDAAIATPQIDTPRAVRLNSYLVFQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLGPG 138 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17073.1 >prot_E-siliculosus-1a_M_contig9.17073.1 ID=prot_E-siliculosus-1a_M_contig9.17073.1|Name=mRNA_E-siliculosus-1a_M_contig9.17073.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=403bp MIFRRPIRDVVEERHGSRTCGVHVFLFYILALGAVLAMSTACLSATESGYback to top mRNA from alignment at E-siliculosus-1a_M_contig9:1735290..1746022+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.17073.1 ID=mRNA_E-siliculosus-1a_M_contig9.17073.1|Name=mRNA_E-siliculosus-1a_M_contig9.17073.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10733bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1735290..1746022+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1735290..1746022+ >mRNA_E-siliculosus-1a_M_contig9.17073.1 ID=mRNA_E-siliculosus-1a_M_contig9.17073.1|Name=mRNA_E-siliculosus-1a_M_contig9.17073.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2418bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1735290..1746022+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |