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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17058.1 vs. uniprot
Match: D7G4I0_ECTSI (Senescence domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I0_ECTSI) HSP 1 Score: 662 bits (1708), Expect = 1.930e-229 Identity = 359/363 (98.90%), Postives = 359/363 (98.90%), Query Frame = 2
Query: 41 MASKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGTVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTGNVGGYVAQPAPPNPSSS 1129
M SKLPPP EKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATG VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSST NVGGYVAQPAPPNPSSS
Sbjct: 1 MTSKLPPPPEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGAVNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGKEFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGVIESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTATTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTSNVGGYVAQPAPPNPSSS 363
BLAST of mRNA_E-siliculosus-1a_M_contig9.17058.1 vs. uniprot
Match: A0A1X6P731_PORUM (Senescence domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P731_PORUM) HSP 1 Score: 70.5 bits (171), Expect = 7.540e-9 Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 2
Query: 680 AGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTRREAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEHAARSAGQIGLDGWRIFRFPTKLGVTTLVK 1027
AG V +V+T G +A S + +R AP S H L TG +A ++EAAD G+ +L +T G + A+YG A A AG + +R+ RFP+K G TT+VK
Sbjct: 251 AGALTGVGHRVATAVGGGLAESGAMRRAREAPPNSVGGVFHTALSTGCLAFANIYEAADETGRAILTTTATGTTALTDARYGPRAASVAHDAGLTAVSAYRVVRFPSKFGATTVVK 366
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 1092 |
| Model size | 2996 |
| Exons | 2 |
| Ec32 ortholog | Ec-07_000540.1 |
| Ec32 ortholog description | Senescence/spartin-associated |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936406.2815075-UTR-E-siliculosus-1a_M_contig9:1620629..1620669 | 1622936406.2815075-UTR-E-siliculosus-1a_M_contig9:1620629..1620669 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig9 1620630..1620669 + |
| 1696251063.7166162-UTR-E-siliculosus-1a_M_contig9:1620629..1620669 | 1696251063.7166162-UTR-E-siliculosus-1a_M_contig9:1620629..1620669 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig9 1620630..1620669 + |
| 1622936406.366406-UTR-E-siliculosus-1a_M_contig9:1622465..1624329 | 1622936406.366406-UTR-E-siliculosus-1a_M_contig9:1622465..1624329 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig9 1622466..1624329 + |
| 1696251063.748106-UTR-E-siliculosus-1a_M_contig9:1622465..1624329 | 1696251063.748106-UTR-E-siliculosus-1a_M_contig9:1622465..1624329 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig9 1622466..1624329 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936406.297242-CDS-E-siliculosus-1a_M_contig9:1620669..1621293 | 1622936406.297242-CDS-E-siliculosus-1a_M_contig9:1620669..1621293 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 1620670..1621293 + |
| 1696251063.7268949-CDS-E-siliculosus-1a_M_contig9:1620669..1621293 | 1696251063.7268949-CDS-E-siliculosus-1a_M_contig9:1620669..1621293 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 1620670..1621293 + |
| 1622936406.3537047-CDS-E-siliculosus-1a_M_contig9:1621997..1622465 | 1622936406.3537047-CDS-E-siliculosus-1a_M_contig9:1621997..1622465 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 1621998..1622465 + |
| 1696251063.7379212-CDS-E-siliculosus-1a_M_contig9:1621997..1622465 | 1696251063.7379212-CDS-E-siliculosus-1a_M_contig9:1621997..1622465 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 1621998..1622465 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17058.1 >prot_E-siliculosus-1a_M_contig9.17058.1 ID=prot_E-siliculosus-1a_M_contig9.17058.1|Name=mRNA_E-siliculosus-1a_M_contig9.17058.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=364bp
MASKLPPPSEKQPPLGDLPAGVPYEAILTAVGTLAEQSPSAGGGVSATGT VNVIQGRVDENPEAGFFGFLSVENLNVPLVSTSRSSRVGPGVYRVCIPGK EFLLTLDQRTEPPIVEGMENVLRWFTAFEGDEMPRGVTPAGVKATGVKGV IESAGVAGAAMIMRVGEALNASIKERTEAKLAAQADQPAKKVKLGGAVTA TTLTGARKVVGAGAGVAAAVIDKVSTVAGNAVANSSIVANSRGAPAGSTR REAHDMLVTGAVALGRVWEAADGQGKLLLESTGDGMGRIAGAKYGSEAEH AARSAGQIGLDGWRIFRFPTKLGVTTLVKGAVKGATAAGSQSSSTGNVGG YVAQPAPPNPSSS* back to topmRNA from alignment at E-siliculosus-1a_M_contig9:1620630..1624329+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig9.17058.1 ID=mRNA_E-siliculosus-1a_M_contig9.17058.1|Name=mRNA_E-siliculosus-1a_M_contig9.17058.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3700bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1620630..1624329+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) AGAAGCGCGCACCGTCATCATCCCACCAAGAGGACCAACCATGGCGAGCA
AGCTGCCGCCGCCATCGGAGAAACAGCCGCCTCTGGGCGACCTGCCCGCG
GGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTACCCTGGCGGAGCA
GTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGGACGGTGAACGTGA
TCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTTCTTCGGCTTCCTG
TCCGTCGAGAACCTCAACGTCCCGCTCGTGTCGACGTCCCGGTCCTCGCG
CGTCGGCCCGGGCGTCTACCGCGTGTGCATCCCGGGCAAGGAGTTCCTGC
TCACGCTGGACCAGCGCACGGAGCCCCCGATCGTCGAGGGCATGGAGAAC
GTCCTGCGGTGGTTCACGGCCTTCGAGGGGGACGAGATGCCCCGCGGCGT
CACGCCCGCAGGTGTCAAGGCCACCGGCGTCAAGGGCGTGATCGAGAGCG
CAGGCGTGGCCGGAGCGGCGATGATCATGCGGGTGGGCGAGGCGCTGAAC
GCGAGCATCAAGGAGCGGACCGAGGCCAAGCTGGCGGCGCAGGCCGACCA
GCCGGCGAAGAAGGTCAAGCTGGGCGGGGCGGTGACCGCCACCACGCTGA
CCGGGGCGCGCAAGGTGAGAACTGTACTACTGTACTGCCGTAGGTGACCA
AAGATATCACACCCCCTGGACCGATTTTCAATGCTCGAATACTCCACAGT
AGAATGAGTGGCGGGGCCGCGTTGGAACTGTCTCGTCGAGAGCTTTCCAA
AAACGCACCATTTGAATGTGGAGTAACCGAGCTTTGAACACCAGCCGAAG
GGGGGTGGTATCTTGTGTCATGTCACCTTTGGTGTGTAGCCCTCTTGCCT
AGAGCCGAAGTAGTCATGGCCGCCTTGGACGGCTGGACTGCGATGCTGGC
ACTAAGTGAGCACGCCTCTTGCCGTTTTTTCTTGGAGGACACGCGTGACT
TGGCACTTTTTTTACGACAAAAGACTCTGGGTTTTCGGGGCTCTGAAAAA
ATCCCGCGCTCGCTCCCTGCGGCATTTCGGAACTTACGGGCAGCTTTCAT
GCGCGCGTCTTGGCGGCTGGTATGTACTGTTGTGGTTCCCGGGTTTTTGT
CGGTTCAACTGGCATGGCTTCGTTGAGGCGTGCTCTTCACCTGTCTATTC
CGTAGACGGATTTCAGTGTTTCAAGCCTTCCTTGAAACGTGCACTCGCTT
CCAGCAATATGTCGTGCAACCTGCGAAAACTCGAGAGTTGTAGCTAGTTG
GACAAGTCTTCGAATACCGAAAAACACCTGCTGTCGTTTCACATTGCATT
CCCGCCTGCCTGTTGCAGGTCGTCGGCGCCGGCGCCGGCGTCGCCGCGGC
CGTCATCGACAAGGTGTCCACAGTGGCCGGAAACGCCGTGGCAAACAGCA
GCATTGTGGCGAACTCGCGAGGCGCTCCCGCGGGTTCCACGAGACGCGAG
GCCCACGACATGCTCGTCACCGGGGCGGTGGCGCTCGGCCGAGTCTGGGA
GGCGGCAGACGGCCAGGGGAAGCTGCTGCTGGAGTCGACCGGCGACGGCA
TGGGACGGATCGCGGGAGCCAAGTACGGGTCGGAGGCGGAGCACGCGGCG
AGGTCGGCCGGCCAGATCGGGTTGGACGGGTGGCGGATCTTCCGGTTCCC
GACGAAGCTAGGGGTGACGACGCTCGTCAAGGGAGCCGTGAAGGGCGCTA
CGGCCGCCGGCTCGCAGTCGTCCTCCACGGGCAATGTGGGGGGGTATGTC
GCTCAGCCTGCACCACCGAACCCCTCCAGTAGCTAGGAACCTGGAGCGAG
AAAAAATTGCGACGTGCTGAGCTTGGTGGGCTTGGAAGATTACCGGGGTA
TCTCTTCTTCAGTGCGTGTACCGTCGAAGACTTCCGGGGGCATGTTTCGG
CCAGTTCCCGTCGGCTTCCAGTCGATACAATAGCTGCAACGCGTGGCTGC
TGGAGTCGACTTCGGTTGGGCGGTAGTTAATTGCGTCCCTAAGAAACAAG
GCGAACGTGCGGTGCTCGTTCGAAGTTTAAGATGGCCGCTGGTCTTGCCC
TACACAACAGTATCGACAGGACAAGTAGTGTGTATTGAATGGGTGATAGA
TTTATTGTTTCGACGTCTTTCTAGCGAGAGGAGGCGATAGCAAGGAACGT
AAACGTTACGATTGTAATCGTACTGGATATCCAGTCTATATATTAGGTGA
CCTCTAGAATGTTTGGGAACCGGGGGCTTGCGAAGCGAGATTCTTGGACG
TGTCAAATTTGTTTGCCTGTTCTGTGCGAAAGCATTCGCGCTGGGTATGC
GCGGCTGGCAGCAAGTTGTGCGCTGGTCGTAGTAATGTTTTTATATCGTG
TACGTTTTGTGTTTCCGCTTGCCTGTGGTCTAGGCTATGTCCGATTTTGT
TGAGGTAGGAGTGCTTGTTCCGAAGTCTTGGCTTCCGTCGCCGTCGGACG
CAAGCTTTGTTTTCTTGTTTCGTTGTCCTCGATACGCCGAAATATCTTAT
GTGATTTGTGGAGACGGGTAACGCATCACTTGCCTGCCTGCTTTGTCTTT
GAACCGGTAACGTCTATACCGTCGTCGCCAGAAACGTGAATGGGCACGTC
GCCGGGCATGGCCGTGGTATGGCTGGCACTAGGGTGTACCGACACGTCAC
TGCACCAGGCATTTTACGCAGCGCGATTTTGATCGTACAATAGGGAATCA
TGTCTAATGGGGAACGTGTTTCTTATTATGAAAGCCAACGGCATGTGCAT
GATGAGCACCTGTTGAGGCCAGAAGGTGGATGCTGTGGATGTGCGCAGTA
GACGAAATAGGAGATGATTTCCAAGTCAGCTTCGGCCGTCAGTCGAATCT
TTAGAAGCGCCACCCCTTCCATCATTCGACGTTGGAGAACAGCCGTTGTT
TGTGTTCCTTGGCCTGGAATGGCACGTTGATAGCGGAATGAGTAGAGTCT
CCTCTTCGTAGGCCTCCCGCCACTTGCAGGCTGCCCTCTGGCCTGTAACG
CTGGGCACAAAAAACTGTGTTCGCCCCGGGGCTCGTCGGTGTTCTGCTTC
TTGCAAAGATCGCCCCGTTGCCTCGGTTGTTAGTCCTAGGAGAATGGGTC
TTCGCGAAACACCGTTCGCATATGACAGGGTGCTAATAGGAAACAAAGGG
TGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTCCGAAATCTCCTTCCGGCG
ATTCCCTTGCCTTTCCTATTTTTGTCTGTTGATTGTTGATTTTTCGCAGC
TTCTTTCTCCACGAAGGGCCCAAGTTGCACCCATCGCACACTTTTCCCAC
GTGTCTTTCCTTCATGGGTTCGTGAATGTTTTATCGCAGATCAATGATGG
TGTAAACACCCGACAACGTTGTTGCCAACGAGCTAAGTATTGCGCCCGTG
GGCTGTGCTTGCGCTTTTGCGTATAGTGCCTGCCTGGATTTCCTCTGGGG
TTGCCACCGTAATTTCGTTTTGAGAGATTGCCCCTCTACCTCTCTCTCGT
GCAGACACTGGGGGTGGGGGGTCGATTTGCAACATGTACTACAGTACTCT
GTAGTCTAATGCTCTACCGAGCAACCATGATTGGGTGGTTGATTTTTTAC
GCGCACTGCGTGGGAAACCAAAGCAACAACAACAGGGCAAGGAGAACTCT
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1620630..1624329+ >mRNA_E-siliculosus-1a_M_contig9.17058.1 ID=mRNA_E-siliculosus-1a_M_contig9.17058.1|Name=mRNA_E-siliculosus-1a_M_contig9.17058.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2184bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1620630..1624329+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGCGAGCAAGCTGCCGCCGCCATCGGAGAAACAGCCGCCTCTGGGCGA CCTGCCCGCGGGGGTCCCGTACGAGGCCATCCTCACCGCGGTGGGTACCC TGGCGGAGCAGTCCCCGTCGGCGGGCGGCGGGGTTTCCGCCACGGGGACG GTGAACGTGATCCAGGGGAGGGTGGACGAGAACCCCGAGGCCGGCTTCTT CGGCTTCCTGTCCGTCGAGAACCTCAACGTCCCGCTCGTGTCGACGTCCC GGTCCTCGCGCGTCGGCCCGGGCGTCTACCGCGTGTGCATCCCGGGCAAG GAGTTCCTGCTCACGCTGGACCAGCGCACGGAGCCCCCGATCGTCGAGGG CATGGAGAACGTCCTGCGGTGGTTCACGGCCTTCGAGGGGGACGAGATGC CCCGCGGCGTCACGCCCGCAGGTGTCAAGGCCACCGGCGTCAAGGGCGTG ATCGAGAGCGCAGGCGTGGCCGGAGCGGCGATGATCATGCGGGTGGGCGA GGCGCTGAACGCGAGCATCAAGGAGCGGACCGAGGCCAAGCTGGCGGCGC AGGCCGACCAGCCGGCGAAGAAGGTCAAGCTGGGCGGGGCGGTGACCGCC ACCACGCTGACCGGGGCGCGCAAGATGGCGAGCAAGCTGCCGCCGCCATC GGAGAAACAGCCGCCTCTGGGCGACCTGCCCGCGGGGGTCCCGTACGAGG CCATCCTCACCGCGGTGGGTACCCTGGCGGAGCAGTCCCCGTCGGCGGGC GGCGGGGTTTCCGCCACGGGGACGGTGAACGTGATCCAGGGGAGGGTGGA CGAGAACCCCGAGGCCGGCTTCTTCGGCTTCCTGTCCGTCGAGAACCTCA ACGTCCCGCTCGTGTCGACGTCCCGGTCCTCGCGCGTCGGCCCGGGCGTC TACCGCGTGTGCATCCCGGGCAAGGAGTTCCTGCTCACGCTGGACCAGCG CACGGAGCCCCCGATCGTCGAGGGCATGGAGAACGTCCTGCGGTGGTTCA CGGCCTTCGAGGGGGACGAGATGCCCCGCGGCGTCACGCCCGCAGGTGTC AAGGCCACCGGCGTCAAGGGCGTGATCGAGAGCGCAGGCGTGGCCGGAGC GGCGATGATCATGCGGGTGGGCGAGGCGCTGAACGCGAGCATCAAGGAGC GGACCGAGGCCAAGCTGGCGGCGCAGGCCGACCAGCCGGCGAAGAAGGTC AAGCTGGGCGGGGCGGTGACCGCCACCACGCTGACCGGGGCGCGCAAGGT CGTCGGCGCCGGCGCCGGCGTCGCCGCGGCCGTCATCGACAAGGTGTCCA CAGTGGCCGGAAACGCCGTGGCAAACAGCAGCATTGTGGCGAACTCGCGA GGCGCTCCCGCGGGTTCCACGAGACGCGAGGCCCACGACATGCTCGTCAC CGGGGCGGTGGCGCTCGGCCGAGTCTGGGAGGCGGCAGACGGCCAGGGGA AGCTGCTGCTGGAGTCGACCGGCGACGGCATGGGACGGATCGCGGGAGCC AAGTACGGGTCGGAGGCGGAGCACGCGGCGAGGTCGGCCGGCCAGATCGG GTTGGACGGGTGGCGGATCTTCCGGTTCCCGACGAAGCTAGGGGTGACGA CGCTCGTCAAGGGAGCCGTGAAGGGCGCTACGGCCGCCGGCTCGCAGTCG TCCTCCACGGGCAATGTGGGGGGGTATGTCGCTCAGCCTGCACCACCGAA CCCCTCCAGTAGCTAGGTCGTCGGCGCCGGCGCCGGCGTCGCCGCGGCCG TCATCGACAAGGTGTCCACAGTGGCCGGAAACGCCGTGGCAAACAGCAGC ATTGTGGCGAACTCGCGAGGCGCTCCCGCGGGTTCCACGAGACGCGAGGC CCACGACATGCTCGTCACCGGGGCGGTGGCGCTCGGCCGAGTCTGGGAGG CGGCAGACGGCCAGGGGAAGCTGCTGCTGGAGTCGACCGGCGACGGCATG GGACGGATCGCGGGAGCCAAGTACGGGTCGGAGGCGGAGCACGCGGCGAG GTCGGCCGGCCAGATCGGGTTGGACGGGTGGCGGATCTTCCGGTTCCCGA CGAAGCTAGGGGTGACGACGCTCGTCAAGGGAGCCGTGAAGGGCGCTACG GCCGCCGGCTCGCAGTCGTCCTCCACGGGCAATGTGGGGGGGTATGTCGC TCAGCCTGCACCACCGAACCCCTCCAGTAGCTAG back to top
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