mRNA_E-siliculosus-1a_M_contig9.17020.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17020.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17020.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1130065..1131473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size720
Model size1410
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936372.3982332-CDS-E-siliculosus-1a_M_contig9:1130064..11307841622936372.3982332-CDS-E-siliculosus-1a_M_contig9:1130064..1130784Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1130065..1130784 +
1696251047.9288845-CDS-E-siliculosus-1a_M_contig9:1130064..11307841696251047.9288845-CDS-E-siliculosus-1a_M_contig9:1130064..1130784Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 1130065..1130784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936372.422388-UTR-E-siliculosus-1a_M_contig9:1130784..11314731622936372.422388-UTR-E-siliculosus-1a_M_contig9:1130784..1131473Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1130785..1131473 +
1696251047.945359-UTR-E-siliculosus-1a_M_contig9:1130784..11314731696251047.945359-UTR-E-siliculosus-1a_M_contig9:1130784..1131473Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 1130785..1131473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17020.1prot_E-siliculosus-1a_M_contig9.17020.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 1130065..1130784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17020.1

>prot_E-siliculosus-1a_M_contig9.17020.1 ID=prot_E-siliculosus-1a_M_contig9.17020.1|Name=mRNA_E-siliculosus-1a_M_contig9.17020.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=240bp
VVWPTSLQQLGFYGNFDQPIVGVVWPASLQQLVFNGNFDQSIVGVVWPVS
LQQLSFGNAFNQPIVGVVWPVSLQQLWFSLNFDQPIVGVVWPVSLQRLRF
GWRFNKPIVGVVWPTSLQQLGFYGSFDQSIVGVVWPTSLQQLGFYGNFDQ
PIVGVVWPVSLQHLSFGWNFNQPIVAVVWPASLKQLSFGDNFDQPIVGVV
WPASVTELSFGKSFNQPVVNVVWPSALQVLSFGAGLSNP*
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mRNA from alignment at E-siliculosus-1a_M_contig9:1130065..1131473+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17020.1 ID=mRNA_E-siliculosus-1a_M_contig9.17020.1|Name=mRNA_E-siliculosus-1a_M_contig9.17020.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1409bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1130065..1131473+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCGTGTGGCCGACCTCCCTGCAGCAGCTAGGGTTTTACGGCAATTTCGA
CCAGCCCATCGTCGGAGTTGTGTGGCCGGCCTCCTTGCAGCAACTAGTCT
TTAACGGCAATTTCGACCAGTCCATCGTCGGAGTCGTGTGGCCGGTCTCC
CTGCAGCAGCTATCGTTTGGGAATGCCTTCAACCAGCCCATCGTCGGAGT
CGTGTGGCCGGTCTCCCTTCAGCAGTTATGGTTTAGTTTGAACTTCGACC
AGCCCATCGTCGGAGTCGTGTGGCCGGTCTCCCTTCAGCGGTTAAGGTTT
GGTTGGCGGTTCAACAAGCCCATCGTGGGAGTCGTGTGGCCGACCTCCCT
GCAGCAGCTAGGGTTTTACGGCAGTTTCGACCAGTCCATCGTCGGAGTCG
TGTGGCCGACCTCCCTGCAGCAGCTAGGGTTTTACGGCAATTTCGACCAG
CCCATCGTCGGAGTTGTGTGGCCGGTCTCCCTTCAGCACCTATCGTTTGG
TTGGAACTTCAACCAGCCTATCGTCGCAGTCGTGTGGCCGGCCTCCTTGA
AGCAGCTATCGTTTGGTGACAACTTCGACCAGCCCATCGTCGGAGTCGTG
TGGCCGGCGTCCGTGACGGAGTTATCATTTGGGAAATCCTTTAACCAGCC
CGTGGTCAACGTCGTGTGGCCGTCCGCCCTGCAGGTGTTATCATTCGGGG
CTGGGTTGAGCAACCCGTGAATGAAGTGATGTGGCCGCCCTCTTTACTAA
GGGTGAGTTGCGGCGGAGATATTCTCCTTTAAAGGTCTCGAGACGCGCTC
TCCGGTTGTGAAGGTCCCAATATGGCAAGGTAGCGCAGGGAGGGCATGGT
TGGGGGGAGGGGGGAAGAACGTACCGAGTAAAATCACCTCGCCCTGGGGT
CGAACATTGTTTAGGGAACAAGACAGATTGGTGTCCCTCGCAACGTGCGC
GTGTCCCTCCGCCTCTTCTGCTTCAAAGTCAACCTCGCCTTTGGCGACAT
AGTTGACGTCCGTCGCTCAGGGACAACCCGCGGTTACGGATTTCGTCCCA
ATCGGGGCCGGAGCGATGGGCGTCAGCTCTACACCCGATCGCGAGGTTGA
ATTTGAAGCTGGAGGCCCGGAGGCGGTGGTTGGAGGAGTAACATAGAACT
ACGTACGTACGGTTGTATGCGCGGCGTTTCGCGGGTTGGTTCGTGTCTTA
TTGACGGGTGTGAAAAAAGAAAGGACCATTCATCTCGCGCTATGGGCTCG
TATCTTGTTCAGGGAACGAGCGAACGTGGATTTCCTCGCTTCATGTAGGG
GGTCTTCCAAGCGTTGTTCGTCGAAGGAAAGCCATCTGAAACTGAAAGTC
ATGCCGGCCGCGTGGTCTTTGGAACAACGATCGGCAACGCGGGTGGGAAA
GCAACACGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:1130065..1131473+

>mRNA_E-siliculosus-1a_M_contig9.17020.1 ID=mRNA_E-siliculosus-1a_M_contig9.17020.1|Name=mRNA_E-siliculosus-1a_M_contig9.17020.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1440bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:1130065..1131473+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCGTGTGGCCGACCTCCCTGCAGCAGCTAGGGTTTTACGGCAATTTCGA
CCAGCCCATCGTCGGAGTTGTGTGGCCGGCCTCCTTGCAGCAACTAGTCT
TTAACGGCAATTTCGACCAGTCCATCGTCGGAGTCGTGTGGCCGGTCTCC
CTGCAGCAGCTATCGTTTGGGAATGCCTTCAACCAGCCCATCGTCGGAGT
CGTGTGGCCGGTCTCCCTTCAGCAGTTATGGTTTAGTTTGAACTTCGACC
AGCCCATCGTCGGAGTCGTGTGGCCGGTCTCCCTTCAGCGGTTAAGGTTT
GGTTGGCGGTTCAACAAGCCCATCGTGGGAGTCGTGTGGCCGACCTCCCT
GCAGCAGCTAGGGTTTTACGGCAGTTTCGACCAGTCCATCGTCGGAGTCG
TGTGGCCGACCTCCCTGCAGCAGCTAGGGTTTTACGGCAATTTCGACCAG
CCCATCGTCGGAGTTGTGTGGCCGGTCTCCCTTCAGCACCTATCGTTTGG
TTGGAACTTCAACCAGCCTATCGTCGCAGTCGTGTGGCCGGCCTCCTTGA
AGCAGCTATCGTTTGGTGACAACTTCGACCAGCCCATCGTCGGAGTCGTG
TGGCCGGCGTCCGTGACGGAGTTATCATTTGGGAAATCCTTTAACCAGCC
CGTGGTCAACGTCGTGTGGCCGTCCGCCCTGCAGGTGTTATCATTCGGGG
CTGGGTTGAGCAACCCGTGAGTCGTGTGGCCGACCTCCCTGCAGCAGCTA
GGGTTTTACGGCAATTTCGACCAGCCCATCGTCGGAGTTGTGTGGCCGGC
CTCCTTGCAGCAACTAGTCTTTAACGGCAATTTCGACCAGTCCATCGTCG
GAGTCGTGTGGCCGGTCTCCCTGCAGCAGCTATCGTTTGGGAATGCCTTC
AACCAGCCCATCGTCGGAGTCGTGTGGCCGGTCTCCCTTCAGCAGTTATG
GTTTAGTTTGAACTTCGACCAGCCCATCGTCGGAGTCGTGTGGCCGGTCT
CCCTTCAGCGGTTAAGGTTTGGTTGGCGGTTCAACAAGCCCATCGTGGGA
GTCGTGTGGCCGACCTCCCTGCAGCAGCTAGGGTTTTACGGCAGTTTCGA
CCAGTCCATCGTCGGAGTCGTGTGGCCGACCTCCCTGCAGCAGCTAGGGT
TTTACGGCAATTTCGACCAGCCCATCGTCGGAGTTGTGTGGCCGGTCTCC
CTTCAGCACCTATCGTTTGGTTGGAACTTCAACCAGCCTATCGTCGCAGT
CGTGTGGCCGGCCTCCTTGAAGCAGCTATCGTTTGGTGACAACTTCGACC
AGCCCATCGTCGGAGTCGTGTGGCCGGCGTCCGTGACGGAGTTATCATTT
GGGAAATCCTTTAACCAGCCCGTGGTCAACGTCGTGTGGCCGTCCGCCCT
GCAGGTGTTATCATTCGGGGCTGGGTTGAGCAACCCGTGA
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