mRNA_E-siliculosus-1a_M_contig9.16993.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16993.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16993.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A6H5KT20_9PHAE (FtsJ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT20_9PHAE)

HSP 1 Score: 453 bits (1165), Expect = 1.120e-152
Identity = 324/446 (72.65%), Postives = 331/446 (74.22%), Query Frame = 1 
Query:   13 LPGRKGLRRLATTTAXXXXXXXXREISLLDLHMARGFSGSAKSNSNKGKANGGGQARGGG--VAHKQRQGRPGAGKSGAGGTAVGRATKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLLSARERLQPSPGNERPKRDEQRALPLQPPGATVAESGEERADLRRDDTKLRSSDGCSVDDGSVSDGVDEEEAFLLRGTSSSRTLLPRPEQPSTDSLQHLFLAGG-NGDPATAAAKRNAADGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRASVVLSDMAPSFSGDRDTDQARVAALVLDALAACLGDEASRRREPP 1341
            L GRKGLRRLATTTA XXXXXXXR ISLLDLH+ARGFSGSAKS                   VAHKQRQ RPGAGK+GAGG A GRATKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDR                                                                RGG AVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIF LLSARERLQP+PGNERPK DEQR LPLQPP  T AESG+ERADLRRDDTKLRSSDG  VDDGS SDGV EE+AFLLRGTS+SRTLLPRPEQPSTDSL+HLFLAGG N DPAT           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRASVVLSDMAPSFSGDRDTDQ RVAALVLDALAACLGDEASRR EPP
Sbjct:    3 LRGRKGLRRLATTTAAXXXXXXXRAISLLDLHIARGFSGSAKSXXXXXXXXXXXXXXXXXXXVAHKQRQKRPGAGKNGAGGAAGGRATKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDR----------------------------------------------------------------RGGEAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFSLLSARERLQPAPGNERPKLDEQRVLPLQPPEVTAAESGKERADLRRDDTKLRSSDGYGVDDGSASDGVGEEDAFLLRGTSASRTLLPRPEQPSTDSLEHLFLAGGGNRDPATXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRASVVLSDMAPSFSGDRDTDQGRVAALVLDALAACLGDEASRRSEPP 383
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A7C2LRX8_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LRX8_9HYPH)

HSP 1 Score: 97.8 bits (242), Expect = 1.020e-19
Identity = 72/177 (40.68%), Postives = 92/177 (51.98%), Query Frame = 1 
Query:  232 KSGAGG---------TAVGRATKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLL 735
            +SGAGG         TA GR+   GSS  W++R L DPYV+ A   G  SRAAFKL+EI+ RH +L+ G RVVDLGAAPGGWS VAA                                      R+ AAE +G+      VVA+DLL ME  +PGV+ ++ DF  A+  +R+  LL
Sbjct:    6 RSGAGGRRRLAMRLRTAKGRS---GSSQRWLQRQLNDPYVAEAKRRGYRSRAAFKLMEIDARHRLLAPGLRVVDLGAAPGGWSQVAAE-------------------------------------RVRAAEGRGQ------VVAIDLLPMEP-IPGVEVVQLDFLSADAPARLTALL 135
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A0D6JFQ9_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JFQ9_9HYPH)

HSP 1 Score: 97.8 bits (242), Expect = 1.460e-19
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 1 
Query:  280 SSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLL 735
            SS  W+ R L DPYV+AA   G  SRAA+KL+EI+D+H +L  G RV+DLGAAPGGWS +AA                                      R++A + +G + G   VVA+D LD+E  LPGV  ++ DF D + E R+  +L
Sbjct:   32 SSARWLERQLNDPYVAAAKREGMRSRAAYKLLEIDDKHRILKPGQRVIDLGAAPGGWSQIAAD-------------------------------------RVKALDGQGDKRG--QVVAIDYLDVEP-LPGVDFVKMDFTDEDAEDRLKSML 143
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A833GDH3_9HYPH (Ribosomal RNA large subunit methyltransferase E n=2 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GDH3_9HYPH)

HSP 1 Score: 96.3 bits (238), Expect = 3.700e-19
Identity = 64/152 (42.11%), Postives = 79/152 (51.97%), Query Frame = 1 
Query:  280 SSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLL 735
            SS LW+ R L DPYV+ A   G  SRAA+KL+EI+D++  L AG RV DLGAAPGGWS VAA+ V AR                                     E KGR      VVA+DLLDM+A +PGV+ +  DF D +   R+  LL
Sbjct:   26 SSKLWLDRQLNDPYVARARREGYRSRAAYKLIEIDDKYRFLKAGCRVADLGAAPGGWSQVAAQRVGAR-------------------------------------EGKGR------VVAIDLLDMDA-IPGVEFLMLDFLDPDAPGRLKALL 133
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A1B1YRE1_9GAMM (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Immundisolibacter cernigliae TaxID=1810504 RepID=A0A1B1YRE1_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-18
Identity = 67/156 (42.95%), Postives = 79/156 (50.64%), Query Frame = 1 
Query:  268 TKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLL 735
            +K GSS  W+  H+ DPYV  A   G  SRA+FKL+EIN R  +L  G  VVDLGAAPGGWS VA+ IV   GPR                                     GR      V+AVDLL+M A LPGV+ I GDF DA V  ++ GLL
Sbjct:    2 SKAGSSRRWLHEHIADPYVRQAQAQGYRSRASFKLLEINQRDRLLQPGATVVDLGAAPGGWSQVASTIV---GPR-------------------------------------GR------VLAVDLLEM-ALLPGVEFILGDFGDAAVLEQMLGLL 110
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A836T9Y5_9GAMM (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Chromatiaceae bacterium TaxID=2049432 RepID=A0A836T9Y5_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 1.390e-18
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 1 
Query:  280 SSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLLSAR 744
            SS  WM+RHL D YV  A   G  SRAA+KL+EI +R  ++  G  VVDLGAAPGGWS +AAR+V  +G                                               V A+D+L+M+  +PGV+ ++GDFR+AEV  R+  LL  R
Sbjct:    6 SSHQWMQRHLNDEYVKRARREGYRSRAAYKLLEIQERDRIIKPGQVVVDLGAAPGGWSQIAARLVGPKGE----------------------------------------------VFAMDILEMDP-MPGVRFLQGDFREAEVMQRLMDLLGGR 113
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A450VLX3_9GAMM (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Candidatus Kentron sp. H TaxID=2126337 RepID=A0A450VLX3_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 1.940e-18
Identity = 59/155 (38.06%), Postives = 76/155 (49.03%), Query Frame = 1 
Query:  280 SSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLLSAR 744
            S+G W+ +H KDP+V  A EAG  SRAA+KL+EIN R G+   GD VVDLGAAPGGWS VA++ V                                              GG   ++A+D L M   LPGV ++ GD RD  V+S I  +L+ R
Sbjct:    3 STGNWITKHRKDPFVRDAREAGYRSRAAYKLLEINQRDGLFQRGDVVVDLGAAPGGWSQVASQQV----------------------------------------------GGAGRIIAIDRLPM-VPLPGVDSLEGDIRDRAVQSWIVEILAGR 110
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A3C1SSX2_9GAMM (23S rRNA methyltransferase (Fragment) n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3C1SSX2_9GAMM)

HSP 1 Score: 91.3 bits (225), Expect = 2.470e-18
Identity = 59/155 (38.06%), Postives = 76/155 (49.03%), Query Frame = 1 
Query:  280 SSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLLSAR 744
            SSG W+R H  D YV  A E G  SRA +KL+EI ++  +L  G  VVDLGAAPGGWS +AARIV  RG                                              +V+A+D+L +E  LPGV A++GDFR+A V  R+   L+ R
Sbjct:    6 SSGRWLREHFTDEYVLRAREEGYRSRAVYKLLEIQEKDRILHPGMTVVDLGAAPGGWSQLAARIVGERG----------------------------------------------LVIALDVLPVEP-LPGVTALQGDFREAAVLDRLLETLAVR 113
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: A0A1F4B6B8_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4B6B8_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 2.730e-18
Identity = 63/152 (41.45%), Postives = 78/152 (51.32%), Query Frame = 1 
Query:  280 SSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLL 735
            SS  W++RH+ DP+V  A E+G  SRAAFKL+EI+ R  +L  G RVVDLGAAPGGWS VAA  V                                            R GG  VVVAVDLL++ A + GV  +RGDFRDA V++ +   L
Sbjct:    5 SSQRWLQRHVTDPFVRRARESGRRSRAAFKLLEIDQRERLLRPGARVVDLGAAPGGWSQVAAERV--------------------------------------------RPGG--VVVAVDLLEI-APISGVTVLRGDFRDAAVQAAVAEAL 109
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Match: UPI001081FC87 (RlmE family RNA methyltransferase n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001081FC87)

HSP 1 Score: 93.6 bits (231), Expect = 3.210e-18
Identity = 65/162 (40.12%), Postives = 81/162 (50.00%), Query Frame = 1 
Query:  250 TAVGRATKGGSSGLWMRRHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGWSMVAARIVHARGPRTPQQGAGRRXXXXXXXXXXPALPPPLPEGRLEAAERKGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLL 735
            TA GR+T    S  W+ R L DPYV AA E G  SRAAFKL+E+++R G+L  G RVVDLGAAPGGW+ VA R     GP                                     KGR      VVA+DLL M+  LPG   ++GDF++ E E+ +   L
Sbjct:   19 TARGRST---GSQRWLERQLNDPYVRAAKEQGLRSRAAFKLIELDERFGLLRPGARVVDLGAAPGGWTQVAVRKA---GP-------------------------------------KGR------VVALDLLPMDP-LPGATVLQGDFQEPEAEAAVLAAL 130
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT20_9PHAE1.120e-15272.65FtsJ domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7C2LRX8_9HYPH1.020e-1940.68Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A0D6JFQ9_9HYPH1.460e-1938.82Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A833GDH3_9HYPH3.700e-1942.11Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A1B1YRE1_9GAMM1.060e-1842.95Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A836T9Y5_9GAMM1.390e-1837.42Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A450VLX3_9GAMM1.940e-1838.06Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A3C1SSX2_9GAMM2.470e-1838.0623S rRNA methyltransferase (Fragment) n=1 Tax=Cand... [more]
A0A1F4B6B8_9PROT2.730e-1841.45Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI001081FC873.210e-1840.12RlmE family RNA methyltransferase n=1 Tax=Crenalka... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:802248..806806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1341
Model size1341
Exons5
Ec32 orthologEc-07_001270.2
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko01000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelMethylocystaceae
COG Functional cat.J
EC2.1.1.166
EggNOG OGs1MW1C@1224,2TSBW@28211,36XU7@31993,COG0293@1,COG0293@2
EggNOG free text desc.FtsJ-like methyltransferase
KEGG koko:K02427
Preferred nameftsJ
Seed eggNOG ortholog1134912.AJTV01000013_gene567
Seed ortholog evalue5.6e-16
Seed ortholog score92.4
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16993.1prot_E-siliculosus-1a_M_contig9.16993.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 802248..806806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936387.2250524-CDS-E-siliculosus-1a_M_contig9:802247..8023751622936387.2250524-CDS-E-siliculosus-1a_M_contig9:802247..802375Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 802248..802375 +
1696251055.0319514-CDS-E-siliculosus-1a_M_contig9:802247..8023751696251055.0319514-CDS-E-siliculosus-1a_M_contig9:802247..802375Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 802248..802375 +
1622936387.2438817-CDS-E-siliculosus-1a_M_contig9:803969..8041531622936387.2438817-CDS-E-siliculosus-1a_M_contig9:803969..804153Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 803970..804153 +
1696251055.0547576-CDS-E-siliculosus-1a_M_contig9:803969..8041531696251055.0547576-CDS-E-siliculosus-1a_M_contig9:803969..804153Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 803970..804153 +
1622936387.2605033-CDS-E-siliculosus-1a_M_contig9:804740..8048441622936387.2605033-CDS-E-siliculosus-1a_M_contig9:804740..804844Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 804741..804844 +
1696251055.0643156-CDS-E-siliculosus-1a_M_contig9:804740..8048441696251055.0643156-CDS-E-siliculosus-1a_M_contig9:804740..804844Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 804741..804844 +
1622936387.279049-CDS-E-siliculosus-1a_M_contig9:805431..8056931622936387.279049-CDS-E-siliculosus-1a_M_contig9:805431..805693Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 805432..805693 +
1696251055.0729277-CDS-E-siliculosus-1a_M_contig9:805431..8056931696251055.0729277-CDS-E-siliculosus-1a_M_contig9:805431..805693Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 805432..805693 +
1622936387.2979383-CDS-E-siliculosus-1a_M_contig9:806143..8068061622936387.2979383-CDS-E-siliculosus-1a_M_contig9:806143..806806Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 806144..806806 +
1696251055.0819733-CDS-E-siliculosus-1a_M_contig9:806143..8068061696251055.0819733-CDS-E-siliculosus-1a_M_contig9:806143..806806Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 806144..806806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16993.1

>prot_E-siliculosus-1a_M_contig9.16993.1 ID=prot_E-siliculosus-1a_M_contig9.16993.1|Name=mRNA_E-siliculosus-1a_M_contig9.16993.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=447bp
MFKTLPGRKGLRRLATTTAATATTTTTREISLLDLHMARGFSGSAKSNSN
KGKANGGGQARGGGVAHKQRQGRPGAGKSGAGGTAVGRATKGGSSGLWMR
RHLKDPYVSAAVEAGAPSRAAFKLVEINDRHGVLSAGDRVVDLGAAPGGW
SMVAARIVHARGPRTPQQGAGRRGGGSRGGGAPPALPPPLPEGRLEAAER
KGRRGGGAVVVAVDLLDMEADLPGVQAIRGDFRDAEVESRIFGLLSARER
LQPSPGNERPKRDEQRALPLQPPGATVAESGEERADLRRDDTKLRSSDGC
SVDDGSVSDGVDEEEAFLLRGTSSSRTLLPRPEQPSTDSLQHLFLAGGNG
DPATAAAKRNAADGLPPPPDHRHGDAAASAAGKGPQLQPPPRRRDPPPPT
RASVVLSDMAPSFSGDRDTDQARVAALVLDALAACLGDEASRRREPP
back to top

mRNA from alignment at E-siliculosus-1a_M_contig9:802248..806806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16993.1 ID=mRNA_E-siliculosus-1a_M_contig9.16993.1|Name=mRNA_E-siliculosus-1a_M_contig9.16993.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4559bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:802248..806806+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTTAAAACATTGCCAGGTCGAAAGGGGCTCCGTCGGCTGGCGACAAC
TACAGCAGCAACAGCAACCACCACCACCACCCGAGAAATATCGCTACTGG
ACCTGCACATGGCACGGGGGTTCTCCGGGTGAGAGAGTTCACGGTCTCCA
AGACCCGGGTTGTCGACAACTGAGGAGGGTCGGTGGTTGCCAGGGCCGGT
GTGTTAAGTTGGTAGCTGCAAGGAACAAGAACTTTCAGGACAGTTGTGCC
CGGACGCGTCTCATGGATTGTTCGACTGGGTCGTCCGAAGTCGAGGAAGA
GGCTCATCGGGAAAAACAATTACGATCGGAAACACCGCCTCTTCCGCCCG
GAGCCGAAGAGGTCGGGGAACCTCTCCAAGGGCATTTCATTGAAGAGCAT
ACACCCACAATAAGTGAACCTCAGCAAGAGCTCGGCTGGTAGATTAGTTT
ACTGCCATGTTTTTGTCCAACAGTCCCGTCCAAGCGGCAGCAAGGGATTT
GCAGAGAAGTACTGCTGTCGCGAGCTAATGCGCGTTTCGTTCAGGTGTCC
TCCAAGGATGCCAGCTTCGGGCGAGGAAAAGCTTTTTATGGCTTTCACGT
GGGAAACTATCCACTTTGGGACCGTGCATAAGGAGTCATGTCATGTAGAC
TTGGGCATGCAATCTTGAGTGTTCGTTGCGCCGGAAGCCGAAGGTGTGGC
TGAACGTGTGATCAGTCAAGCTTCCATGCATGGCGTTCTGAAGATAAAAC
CTTGTTGGCTCTTGCAGTTGAGTGCTGTGGATCACGCCTTGTGGCTTAGT
AGTACTATGGCAGCATTCGCTCCCTCAATACACGCAAGATTTGTGACCTG
GGTGAAATATGTTCACGTCCAAACACCTGCACCGCGATCAAAGTTTGATT
CCAGCATTTCTTCGTCGACGCCAACAAGGACACCGGCTTCCCTCGTCAGG
GGGAGGCCCGAATCGCAGTAAGTATTTACCCACTACAAAGGGGCTGGCAG
TTTCCTTCGTTGAGATTTAGCAAAGGAGAGGGTCTCGGAAGAGAGAGAGA
CAAGAGAGGGGCCAGGGAGACCAAGCCCGAGGGTCTCGGATTCCCCAGCT
CCGCAGGTGGCGCCAAGAGGGACGCATCCACAGTCGGGGTTCTTACTGAT
CAACCATCAGCAAGGATCGTATCGCATCTTGGTCCTACTTTTGTATGTGC
AACAACCGTTACAGCATTTCTACACCAGTCATGCACATTCCAGCGAAGGG
CAATCCCCCCCGAAGCTCAACTGCAGCGATGGTGTGCTTTTTTTAGTGGC
GTGCCGTAAGGATGCGAGTCTATGCACGTGTCGGAGGCATCGAGCGATGC
GTAGTTCCAGCAAGAACGAATGATTTAGTTCGATTTCCGCACCGGTATCG
GCGTTATCACACCCCGGTGCGATGTCACCGATACCGAGTGGTTCCGATAG
ACTTGCGCGATGCTCGTACCCGCATCATTCGCAACGTGGAGCAGAGGCCG
AATAACGTAAGAAACGGGCAGACCAGCCTTTGATTCGCTACGGGGGGAGA
GGAGAAAACAATAAGTCGCACGGGACGCGGAATGCGTCATGATACTCACG
GCATCATCGGTCCTGCACAACAGCAAGCCCGGGGCCCCGACGTATTGTGC
AAACAACCCCCCCCCCCCTACCTTCTCCCGCGCAACGGTCGAGCCTCCCT
TTTTTTTGCGGTTGTTCGTCAGGTCGGCGAAATCAAACAGCAACAAGGGC
AAGGCTAATGGCGGAGGCCAAGCCCGAGGAGGAGGAGTTGCTCACAAGCA
AAGGCAAGGGCGACCGGGAGCAGGCAAGAGCGGAGCGGGGGGGACGGCGG
TTGGGCGGGCGACCAAGGGGGGGTCGTCCGGGCTCTGGATGAGACGCCAC
CTCAAGGTTTGCGCTCCTTCCTTTGGAGGCGTCGTCTTTCGTTCGCACCG
AGTTTCCGTTTCGGCTCGCCCTCGTGTTTTGAGCCCATGCCTCTAGTATC
CGTTGCGCACATGCTCCACTATTTATTTTCTCTGTTGCCTCACCGTGTGC
CTCTAGCCCGTTTCATGTGGTTTGGGTCGTGTTTCTCGCGCTCTTGACCA
TTTGGTCGTTCCGGGTTCTCTCTTTCCGTTGTCTGACCTGTGGGCCAACC
CCTCCTCAAGGTAACCGGTTATTTGGTTGTCCGGAGATGTTGTATGGGGG
AGCTGGGAAGCTTCACATTAGCGTTGCCGTATGGACAGGTGCTTGTTCGG
GGCTGCTCTGTTCTTTCGGCATCTGCGCGATAGAGTAGTCCATCTTCGTG
GAGGATGACAGCACTGAATTCAAGCGGAAAATCCTTGACTTGGTAGCTAA
CCCGGGGAAATAGCTGCCCGCCCGTAGGGGTGTCTATGGACGAATTTAGG
GTATATTCTTTTGTTGTTCACCCGTGCTCTAGAATGCTCGCGCGCTTCGG
GTGACCAACGTCAACAACAGCAGTGAATCGTGGATCGACGCAGGATCCTT
ACGTGTCGGCGGCGGTCGAAGCGGGCGCTCCCTCCCGCGCGGCCTTCAAG
CTGGTTGAGATCAACGACAGGCACGGGGTACTATCGGCGGGAGACCGGTA
AGCGAGAGCAACTCCCCCCCAACAGCCTCACCCTGACACACGCCGGTATA
ATGCGAAATAGCACGTGATGTCGTTTTCTTTCGTGCGCAAACCCGAGCCT
TCTCCCTTCCCCGCTTCGAAATGGTAGAGTTGCTGTTGTCAAGCCTGTTG
ATGATGCTTGCTGTGCGGCGGGGTGGGTGCCAAAGTTGAACCTTCGTTAT
GTTTCGTGCTGAAAACCCACGATAGAGGGAAAGAGGGTACGGAATTTCTC
AGGCGAGCGGTAGGTTTTCGTTTTCAGGATGGAGACTCGCAGCTCGTCAC
ATCGGTATTCGCCCCATCCTTCCACCCCCTCGATAGCGAGTTTTCACGTC
TCTCTGGCAGGACTAATGAGATTTTTTTCGCGAAATGGGCGCAGAACAAA
GTTTGCATTTGGCAGAAAGAATAAAAACACGAACGCGTTTGGGTGAGGTT
CGGCTTGCCTCTAGTAGGCGCCTAAACAAAGGATGCCTCTGTCACCCACA
CCAGAAATTCCAATGTGCATGCTCCGCCACCCCCCCACGACGCTCCCCCT
CCCCCGTCCCTTGCGTACCGCCTGGGCTGTTCAGAGTGGTAGATTTAGGA
GCAGCTCCGGGCGGCTGGTCCATGGTGGCCGCACGCATCGTTCACGCGCG
GGGACCTCGCACCCCTCAGCAGGGCGCCGGCCGTCGGGGGGGCGGCAGCA
GGGGGGGGGGGGCGCCCCCGGCGCTGCCGCCGCCCCTTCCCGAGGGGCGT
CTTGAGGCGGCGGAGAGAAAAGGCAGGCGTGGGGGGGGGGCGGTGGTGGT
GGCGGTGGATTTGCTTGACATGGAGGCGGACTTGCCTGGGGTGCAGGTAA
AGGCGAGATTGGTGCATACGGGGGCTCTCTGAAGGTTGCCGTCGTACATG
GGCTTTCTCGAGGTTGCAGGACTGCCGTGGGCACTGCCTCCTGTTGTGCT
TACGAGAAGGCGTTTTTTCGTGAATGGGGCACTTTTTCTTGCGATGAAGC
TTGAAGGCGTTGTTTCGCGCCCCCGAGTTTGTCGCGTCCCCGCCCATCGG
CATATCAACAATATTTGCATTGATTTACGTACAGGAGATCGTCCGGAAGG
TTTCGCGGTGGAACGTGCTCAAAACAACACCGGACATGACGATAACTTAC
AACCTAGTGTTAACCATTGCCCTTTGACAGCTCTGCCGACCCGCGCACAC
AAGAAAACCCGCCCTTCGACCAACCAACACCATGCCTCTTGCGACACCCT
TTCGCCCGACGGCAACGAAATAACATGTGGGGTAAATGCGTCTCAGGCGA
TCCGCGGAGACTTTCGTGACGCAGAGGTCGAGTCGAGGATCTTTGGCCTA
TTGTCGGCAAGGGAGCGGCTACAACCGTCGCCCGGAAACGAGCGGCCGAA
GCGGGACGAGCAGCGGGCGTTACCCCTGCAACCACCCGGGGCCACGGTGG
CGGAGAGCGGAGAAGAACGAGCCGATCTTCGTCGCGACGACACGAAGCTT
CGCAGCAGCGACGGTTGCAGCGTCGACGATGGTAGCGTTAGCGACGGCGT
TGACGAGGAGGAGGCGTTTCTTCTGCGGGGAACGTCGTCCTCTAGGACGC
TGCTCCCGCGGCCCGAGCAGCCTTCGACGGACAGCCTCCAACACTTGTTC
CTGGCAGGAGGAAACGGAGACCCCGCGACGGCGGCGGCGAAGAGAAACGC
GGCCGACGGGCTGCCACCGCCACCTGATCACCGCCATGGCGACGCCGCCG
CCTCCGCCGCCGGGAAAGGTCCCCAGCTGCAACCCCCCCCCCGTCGTCGT
GACCCGCCGCCGCCGACCCGTGCCAGCGTCGTGCTGTCGGACATGGCACC
GTCGTTCTCCGGAGATCGAGACACGGACCAAGCGAGGGTCGCGGCGCTTG
TCCTTGACGCCCTAGCGGCGTGCCTAGGGGATGAGGCGTCGAGGCGGAGA
GAGCCGCCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:802248..806806+

>mRNA_E-siliculosus-1a_M_contig9.16993.1 ID=mRNA_E-siliculosus-1a_M_contig9.16993.1|Name=mRNA_E-siliculosus-1a_M_contig9.16993.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2682bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:802248..806806+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTTAAAACATTGCCAGGTCGAAAGGGGCTCCGTCGGCTGGCGACAAC
TACAGCAGCAACAGCAACCACCACCACCACCCGAGAAATATCGCTACTGG
ACCTGCACATGGCACGGGGGTTCTCCGGATGTTTAAAACATTGCCAGGTC
GAAAGGGGCTCCGTCGGCTGGCGACAACTACAGCAGCAACAGCAACCACC
ACCACCACCCGAGAAATATCGCTACTGGACCTGCACATGGCACGGGGGTT
CTCCGGGTCGGCGAAATCAAACAGCAACAAGGGCAAGGCTAATGGCGGAG
GCCAAGCCCGAGGAGGAGGAGTTGCTCACAAGCAAAGGCAAGGGCGACCG
GGAGCAGGCAAGAGCGGAGCGGGGGGGACGGCGGTTGGGCGGGCGACCAA
GGGGGGGTCGTCCGGGCTCTGGATGAGACGCCACCTCAAGGTCGGCGAAA
TCAAACAGCAACAAGGGCAAGGCTAATGGCGGAGGCCAAGCCCGAGGAGG
AGGAGTTGCTCACAAGCAAAGGCAAGGGCGACCGGGAGCAGGCAAGAGCG
GAGCGGGGGGGACGGCGGTTGGGCGGGCGACCAAGGGGGGGTCGTCCGGG
CTCTGGATGAGACGCCACCTCAAGGATCCTTACGTGTCGGCGGCGGTCGA
AGCGGGCGCTCCCTCCCGCGCGGCCTTCAAGCTGGTTGAGATCAACGACA
GGCACGGGGTACTATCGGCGGGAGACCGGATCCTTACGTGTCGGCGGCGG
TCGAAGCGGGCGCTCCCTCCCGCGCGGCCTTCAAGCTGGTTGAGATCAAC
GACAGGCACGGGGTACTATCGGCGGGAGACCGAGTGGTAGATTTAGGAGC
AGCTCCGGGCGGCTGGTCCATGGTGGCCGCACGCATCGTTCACGCGCGGG
GACCTCGCACCCCTCAGCAGGGCGCCGGCCGTCGGGGGGGCGGCAGCAGG
GGGGGGGGGGCGCCCCCGGCGCTGCCGCCGCCCCTTCCCGAGGGGCGTCT
TGAGGCGGCGGAGAGAAAAGGCAGGCGTGGGGGGGGGGCGGTGGTGGTGG
CGGTGGATTTGCTTGACATGGAGGCGGACTTGCCTGGGGTGCAGAGTGGT
AGATTTAGGAGCAGCTCCGGGCGGCTGGTCCATGGTGGCCGCACGCATCG
TTCACGCGCGGGGACCTCGCACCCCTCAGCAGGGCGCCGGCCGTCGGGGG
GGCGGCAGCAGGGGGGGGGGGGCGCCCCCGGCGCTGCCGCCGCCCCTTCC
CGAGGGGCGTCTTGAGGCGGCGGAGAGAAAAGGCAGGCGTGGGGGGGGGG
CGGTGGTGGTGGCGGTGGATTTGCTTGACATGGAGGCGGACTTGCCTGGG
GTGCAGGCGATCCGCGGAGACTTTCGTGACGCAGAGGTCGAGTCGAGGAT
CTTTGGCCTATTGTCGGCAAGGGAGCGGCTACAACCGTCGCCCGGAAACG
AGCGGCCGAAGCGGGACGAGCAGCGGGCGTTACCCCTGCAACCACCCGGG
GCCACGGTGGCGGAGAGCGGAGAAGAACGAGCCGATCTTCGTCGCGACGA
CACGAAGCTTCGCAGCAGCGACGGTTGCAGCGTCGACGATGGTAGCGTTA
GCGACGGCGTTGACGAGGAGGAGGCGTTTCTTCTGCGGGGAACGTCGTCC
TCTAGGACGCTGCTCCCGCGGCCCGAGCAGCCTTCGACGGACAGCCTCCA
ACACTTGTTCCTGGCAGGAGGAAACGGAGACCCCGCGACGGCGGCGGCGA
AGAGAAACGCGGCCGACGGGCTGCCACCGCCACCTGATCACCGCCATGGC
GACGCCGCCGCCTCCGCCGCCGGGAAAGGTCCCCAGCTGCAACCCCCCCC
CCGTCGTCGTGACCCGCCGCCGCCGACCCGTGCCAGCGTCGTGCTGTCGG
ACATGGCACCGTCGTTCTCCGGAGATCGAGACACGGACCAAGCGAGGGTC
GCGGCGCTTGTCCTTGACGCCCTAGCGGCGTGCCTAGGGGATGAGGCGTC
GAGGCGGAGAGAGCCGCCGGCGATCCGCGGAGACTTTCGTGACGCAGAGG
TCGAGTCGAGGATCTTTGGCCTATTGTCGGCAAGGGAGCGGCTACAACCG
TCGCCCGGAAACGAGCGGCCGAAGCGGGACGAGCAGCGGGCGTTACCCCT
GCAACCACCCGGGGCCACGGTGGCGGAGAGCGGAGAAGAACGAGCCGATC
TTCGTCGCGACGACACGAAGCTTCGCAGCAGCGACGGTTGCAGCGTCGAC
GATGGTAGCGTTAGCGACGGCGTTGACGAGGAGGAGGCGTTTCTTCTGCG
GGGAACGTCGTCCTCTAGGACGCTGCTCCCGCGGCCCGAGCAGCCTTCGA
CGGACAGCCTCCAACACTTGTTCCTGGCAGGAGGAAACGGAGACCCCGCG
ACGGCGGCGGCGAAGAGAAACGCGGCCGACGGGCTGCCACCGCCACCTGA
TCACCGCCATGGCGACGCCGCCGCCTCCGCCGCCGGGAAAGGTCCCCAGC
TGCAACCCCCCCCCCGTCGTCGTGACCCGCCGCCGCCGACCCGTGCCAGC
GTCGTGCTGTCGGACATGGCACCGTCGTTCTCCGGAGATCGAGACACGGA
CCAAGCGAGGGTCGCGGCGCTTGTCCTTGACGCCCTAGCGGCGTGCCTAG
GGGATGAGGCGTCGAGGCGGAGAGAGCCGCCG
back to top