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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16977.1 vs. uniprot
Match: A0A6H5JDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ5_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.670e-71 Identity = 180/193 (93.26%), Postives = 183/193 (94.82%), Query Frame = 1
Query: 1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKELSKSGFSFRHPDAPPPFDDXXXXXXXXXXXXXXXXXXXXXXXXX-LSDAEASMVDEDTAMGDVGDAGEXXXXXXXXXXXXXXXXXXXXXXXXGGRNTASELAAKLKKKRRQAKRRNYVEFPAHEN 576
MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKE+SKSGFSFRHPDAPPPFDD XXXXXXXXXXXXXXXXXXX LSDAEASMVDEDTAMGD GD GEXXXXXXXXXXXXXXXXXXXXXXXXG RNTAS++AAKLKKKRRQAKRRNYVEFPAHEN
Sbjct: 1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPPFDDDKNEATXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAGDGGEXXXXXXXXXXXXXXXXXXXXXXXXGERNTASDVAAKLKKKRRQAKRRNYVEFPAHEN 193
BLAST of mRNA_E-siliculosus-1a_M_contig9.16977.1 vs. uniprot
Match: D7G0M3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M3_ECTSI) HSP 1 Score: 189 bits (481), Expect = 7.230e-54 Identity = 171/299 (57.19%), Postives = 172/299 (57.53%), Query Frame = 1
Query: 1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKELSKSGFSFRHPDAPPPFDDXXXXXXXXXXXXXXXXXXXXXXXXX-LSDAEASMVDEDTAMGDVGDAGEXXXXXXXXXXXXXXXXXXXXXXXXGGRNTASELAAKLKKKRRQAKRRNYVEFPAHEN*QDNHPAFLYTCVDDACAALLG*KDNVEQAFPP*LSHILFWGEGYSCICMP*SLDH*PRIPLMPKMERYVGFSPAHGTFHKDDLEAGHDPCVSYGKPDMAWVEWAS 894
MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKE+SKSGFSFRHPDAPP FDD XXXXXXXXXXXXXXXXXXXXXXX LSDAEASMVDEDTAMGD AGE XXXXXX XXXXXX GGRNTASEL DDLEAGHDPCV GKPDM WVEWAS
Sbjct: 1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDDDNXXXXXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGD---AGEEDAGGGPXXXXXXDGVSXXXXXXEGGRNTASEL---------------------------------------------------------------------------------------------------------DDLEAGHDPCVCCGKPDMPWVEWAS 191
BLAST of mRNA_E-siliculosus-1a_M_contig9.16977.1 vs. uniprot
Match: A0A835Z2D3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D3_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.170e-17 Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKELSKSGFSFRHPDAPP 249
MAKSIRSKVKKRNR +MRK G+PH +++QA+CTA++Q++V + +G + KLKG+L AQA NP E+SK +F+HP A P
Sbjct: 1 MAKSIRSKVKKRNRADMRKQYGEPHAQQIQAKCTARLQETVQYHSGPGINKLKGLLNKAQAENPLQPEVSKHSHTFKHPYAKP 83
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 579 |
| Model size | 1559 |
| Exons | 4 |
| Ec32 ortholog | Ec-07_001560.1 |
| Ec32 ortholog description | Uncharacterised protein family UPF0642 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936383.6688333-UTR-E-siliculosus-1a_M_contig9:592620..593600 | 1622936383.6688333-UTR-E-siliculosus-1a_M_contig9:592620..593600 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig9 592621..593600 - |
| 1696251053.2638664-UTR-E-siliculosus-1a_M_contig9:592620..593600 | 1696251053.2638664-UTR-E-siliculosus-1a_M_contig9:592620..593600 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig9 592621..593600 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936383.6847405-CDS-E-siliculosus-1a_M_contig9:593600..593675 | 1622936383.6847405-CDS-E-siliculosus-1a_M_contig9:593600..593675 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 593601..593675 - |
| 1696251053.2758417-CDS-E-siliculosus-1a_M_contig9:593600..593675 | 1696251053.2758417-CDS-E-siliculosus-1a_M_contig9:593600..593675 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 593601..593675 - |
| 1622936383.6958702-CDS-E-siliculosus-1a_M_contig9:594456..594699 | 1622936383.6958702-CDS-E-siliculosus-1a_M_contig9:594456..594699 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 594457..594699 - |
| 1696251053.2856429-CDS-E-siliculosus-1a_M_contig9:594456..594699 | 1696251053.2856429-CDS-E-siliculosus-1a_M_contig9:594456..594699 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 594457..594699 - |
| 1622936383.7107067-CDS-E-siliculosus-1a_M_contig9:595706..595831 | 1622936383.7107067-CDS-E-siliculosus-1a_M_contig9:595706..595831 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 595707..595831 - |
| 1696251053.2957504-CDS-E-siliculosus-1a_M_contig9:595706..595831 | 1696251053.2957504-CDS-E-siliculosus-1a_M_contig9:595706..595831 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 595707..595831 - |
| 1622936383.7228491-CDS-E-siliculosus-1a_M_contig9:596848..596984 | 1622936383.7228491-CDS-E-siliculosus-1a_M_contig9:596848..596984 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 596849..596984 - |
| 1696251053.3073752-CDS-E-siliculosus-1a_M_contig9:596848..596984 | 1696251053.3073752-CDS-E-siliculosus-1a_M_contig9:596848..596984 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig9 596849..596984 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.16977.1 >prot_E-siliculosus-1a_M_contig9.16977.1 ID=prot_E-siliculosus-1a_M_contig9.16977.1|Name=mRNA_E-siliculosus-1a_M_contig9.16977.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=193bp
MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVT KLKGMLTAAQAANPPSKELSKSGFSFRHPDAPPPFDDDDEATAPAPSPSR NARGRTRGRARSLSDAEASMVDEDTAMGDVGDAGEGDAGGGPAGGGGGDG VSGGAKGGEGGRNTASELAAKLKKKRRQAKRRNYVEFPAHEN* back to topmRNA from alignment at E-siliculosus-1a_M_contig9:592621..596984- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig9.16977.1 ID=mRNA_E-siliculosus-1a_M_contig9.16977.1|Name=mRNA_E-siliculosus-1a_M_contig9.16977.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4364bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:592621..596984- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGCCAAGAGTATTCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT
GCGCAAGAACGTAGGCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGCA
CCGCGAAGATCCAGAAGTCCGTCGCGTTTAGCGCAGGTGGGTTGCATCGC
GGCCTTTACAGCGTTGAGGTGCCGGGTGCTCTTTAGGCTGAGGTCTTAAG
GCTCGGCGTGGGAGAGGGGGGGTGTACTCATAGCCGTGCATGCTGTAGTC
GTTAGGCCATTTACCTGGCATGAAGACAACAACAACAACAACAACTAGGG
TTAGCCGAGACGGAGCACGCCGAGTTCTCACCGGACCACGGGTGTACTGT
ATATGACACAAGATAACACACCCCCTGGACCGATTTTCAGAGCTCGATTT
CTCCTCGACGAATAGGATGCATGAATGAAACGATACGTTTTCGGAAAGCT
CTCAACGAGACGGTTTCAACGCCCCCGTTTTCGGCGCTGTGACTCTTTCT
GCTGTTGAGAAATCGAGCTTTGAAAATCGGTCCAGCGGGTGTGTTATCTT
GTGTCATATACGGTATGTGGGTCCGGGTGCCGGCAATGCGGCGTATCGGG
ATGTTGTGTGTGATGTTGTTGGACGGCTTGTTGAATACCGTAAACGGAGT
GGCACACATTGGATCACAGCAGTAGATGGGAACCGTTTTTCATGAACTTA
GCTGTCTGTGTACTTGAACCGCACGAGCGTGTTGCGCTCTGTTTCCGTTC
TCGCTGGTCTCACTTTTTTCCCTTGAGACACGCTTTACATTTACTCCACC
TTGCTACTGTACATGTCCACCCTTAGCAGCAGCGAGTTCGATAGACACGG
AAGGCGCAGGGCATCTGATGAGCTTCGGTTTTCTTTGGGCCCGGACCTGT
GTTGCTCATCCCGGTTATTCCGTGCGCCTTGCGCTACCTTCACTGCCGCC
AGTTCTTGCGCCTGTCCGTCAATCCGACATGGGTTTGTAGCTACAACTCG
TGATCCCGGGTGTGGTTTGCCTCGTGACCATGGCTACATACTCGAACGAT
CCCCACAACTTTTGCGGGCAAGTTCGTTTTTGACCGTGGCTCTTGTTTGT
GCGTGCGTGGTTTTCCTCGTGCGGCGCGGCGCGCACACCCCACCCACCAC
CAGGCGAGAGCGTGACGAAGCTCAAGGGCATGCTGACCGCGGCGCAGGCG
GCCAACCCACCGTCCAAGGAGCTTTCCAAGAGCGGGTTCTCTTTCCGGCA
CCCTGACGCGCCCCCTCCGTTCGACGACGTGGGTACCTTCAATTACCGCT
GCTGTAGATAGCCGCTCGAGTATCTGAGTTGTGTGTCTTGCCTCATTTAT
TGGACGACTCTTGTTTATTTTCCTGTTCTCGGTTCCTCTGCATAGCCAAC
CTACTTTTCACCTTGCCTCTGTAGCTGAGCATCTATCTTCAGAGCCCCGC
AGTGTTCCCGATTGGTGGTTTTTATTCGAAAGGAAAGTTTTTTATGGCAG
GTGAAAAATCCCTGGTCGACCGGTGACGTCACAACCGGGGAGTGTGACGT
CACTCTCCGGGATAAACTATTTCGAGAGTGTCAGATTGACGCGTGGACGT
TCCTGACGCCAGACAGGCTAGTCGCCACTCACATGTCTTTTGCGTGCACG
CCTTAATTATTGGGGGGCCTTGTGCAAGGCGAGAGAGACGCTCTCGACCC
AACGACCGCACTGTCGTCCCTCAAGTAGCGATCCCGCCCGGCAGTCAGAC
TCCTCGCCTGGTCAGGGACACCGTGACGCCGACAACGGGCCGTTCGAGAT
GCGCCTTGGAACGGTCGTTTGCTGCCGCCACCGTGTCGCCGAGCCAGGCG
TCGAATGCTGCTTTACTGCCGGCGCCGACGCTGCTCGGGGAATGAACTTA
CCTCGCATGCCGACGCACCGCTCGAGAATACTTCAAAAAGCAGCTGGAGA
TTGGTTGGAGTGGCCGATGCCGAGAAGGCGGCGAAGTGATGGACAGGCCG
TCAACCTAGGCAAATCCTTCGCGACACCTTGTTGAATCCTCACGTCCTCG
CTGATCCCCTGCGTGCGCAAATCCGTGGGAGTCACTTGTTTTTGTTTCGC
CTTTTTTTTTCTTTCGGCGGTCACGCTCGTGAGTCTTGATTCTTAATTTC
TCCCATTTTTGCGATTGATCCTGCTTCCCTCTCTCTCACTCTCGCTCTCT
CGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCGCTCGCTCTCTCGCT
CTTTCCCCCTTCCCTTTGTCTTTCCCCGGCTCCAGGATGACGAAGCGACG
GCACCGGCGCCGTCCCCGTCGCGAAACGCCCGCGGCCGCACCCGAGGGCG
AGCGAGGAGCCTCTCCGACGCCGAAGCCTCCATGGTCGACGAGGACACGG
CCATGGGAGATGTGGGAGATGCTGGCGAGGGGGATGCTGGCGGGGGACCC
GCGGGCGGCGGGGGGGGGGACGGGGTCAGTGGGGGTGCAAAGGGCGGCGA
GGGGGGACGAAACACGGCCTCTGAACTGGTGAGATTTTGTAGAAGATCGG
GATTAACTGCTTCTGCGGGGGGCCCCTGTGTTTCGCCCCCTCCCCCCGGT
GTTTTTGCAGCTGACGGACGTAACTCCAATTGCTCAAAGTCGGCGATTAC
GCGTACGTAACATCTTCACGTAACACCTTCCAGTCGCAGTAGCCGACGAC
ATGACTGAGATTTTGTGTCGTGCTCCCGGGGGCTCCGCCGTTTCGCGTTG
GATTTCTTCGTAGGCAAGCGGCGGTGCCCGGCCACGAAATTGTCTGTCTG
GTGCATACGCAGCGGCAACCACGCAAAAATAATGCAATGGAAAAACTTTG
CAGTTTTTGGCGTGTGGAACACATCTGACCACGTGGCGGACGTATACTAG
CACCCCCCTTGAAACGACGCCCAGGAGACCGTGGATCGACTCGACGCCAG
CCGTTCGGGTTCCGGTCAACACTTTTCTTGCTGTCTAGCAAACAATAATA
ACGCTTCTGAATAGGGGGGAAGCAATAAGGAGGTGACAATAGTGTCCGTG
ACGTCTGTCAAGGGTGGATGATCCCCTCTCTCTCTCGTCACATTCAATTG
TCGACACCGTCCTGTGCATATCTCGGGTGCATACATTACAGGCGGGTCAT
GCTTCCCCCAACCTTTGGACTTCTTTTTATTGTTCTCGCTGCTTCTGAGG
CTTACTCCTGACGCTTGCCTCATTTTTTATTGTTACCACGCCTTACCTCC
ATGCGCTTTACCACCGCCTTTGACACTGTCAAACCTGGATGTCAATGTCT
TGTGCGCAGGCCGCGAAGCTCAAGAAGAAGCGTCGACAAGCCAAGAGGAG
AAATTACGTCGAGTTCCCCGCACACGAAAATTGACAAGACAACCACCCTG
CATTCCTGTATACGTGCGTGGACGATGCATGCGCCGCGCTCCTGGGTTAA
AAGGACAACGTGGAGCAGGCGTTTCCTCCGTGACTGAGCCACATTTTGTT
TTGGGGCGAGGGGTACTCATGTATATGCATGCCGTAGTCGTTAGACCATT
GACCTCGCATCCCTTTAATGCCGAAGATGGAGCGATATGTCGGGTTTTCG
CCGGCCCACGGTACGTTTCACAAGGATGACCTAGAAGCTGGTCATGATCC
TTGCGTTAGCTATGGCAAGCCAGATATGGCATGGGTTGAATGGGCATCCC
TGGGGTAGCTGGCCGGACATAACCTGGTGGAGTGTGTATCGCAGGTGTCA
TCTTTTTCTATTTTGATGTGGCAGCAGTAGTGGTGGACGATGTGCTTCTA
CAATATTGTAGGCGCCATTTCCTTTTTCATTGCTCCTCGGTCGATTAGCT
GCTGGATTGTTGTCCTTGACGACAGCAAGTGTGCCATACCTAGTTTGCAC
GTTTACCCGCAAGAGTAATATGAAGCACGATCGCAGCTACTGTGGGTATG
AGAGCTGATTCCTAAGAGGGTGGACGGCGCTATTTGCAGAGAACATTAAA
TGCCGCAGAGAAAACGTGCGAAGTGCTTGATGATTCTTGTTGGTCAATAC
CAAAGCGCGGCTAATTTTGATTGGCCAAACGGTTCGAGAATTACTTCGTC
TTGAAGCGGCTATCACCCCTGGCTATCACCCCCCTGTTCCTTTGGCCGGT
GCGTGAATGATCGATAGTCGTGTGCGGTTACCCGGTAAGATTCGCTTAAT
CATGGTGTTCGAACTTCAAACGCTGTTCGTCTTGAAACTATTCAGCCCTT
CGCGGAGTAAACCTTCGCCGTGTTGCCAAGCTTGAGCGGTTTGTCGGCCG
GTGGATGGTGGCTGGGCAACAGGCCAGACGACGACATCATACCGCCACTG
CTGTGTCGACGAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:592621..596984- >mRNA_E-siliculosus-1a_M_contig9.16977.1 ID=mRNA_E-siliculosus-1a_M_contig9.16977.1|Name=mRNA_E-siliculosus-1a_M_contig9.16977.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1158bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:592621..596984- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGGCCAAGAGTATTCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT GCGCAAGAACGTAGGCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGCA CCGCGAAGATCCAGAAGTCCGTCGCGTTTAGCGCAGATGGCCAAGAGTAT TCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGATGCGCAAGAACGTAG GCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGCACCGCGAAGATCCAG AAGTCCGTCGCGTTTAGCGCAGGCGAGAGCGTGACGAAGCTCAAGGGCAT GCTGACCGCGGCGCAGGCGGCCAACCCACCGTCCAAGGAGCTTTCCAAGA GCGGGTTCTCTTTCCGGCACCCTGACGCGCCCCCTCCGTTCGACGACGCG AGAGCGTGACGAAGCTCAAGGGCATGCTGACCGCGGCGCAGGCGGCCAAC CCACCGTCCAAGGAGCTTTCCAAGAGCGGGTTCTCTTTCCGGCACCCTGA CGCGCCCCCTCCGTTCGACGACGATGACGAAGCGACGGCACCGGCGCCGT CCCCGTCGCGAAACGCCCGCGGCCGCACCCGAGGGCGAGCGAGGAGCCTC TCCGACGCCGAAGCCTCCATGGTCGACGAGGACACGGCCATGGGAGATGT GGGAGATGCTGGCGAGGGGGATGCTGGCGGGGGACCCGCGGGCGGCGGGG GGGGGGACGGGGTCAGTGGGGGTGCAAAGGGCGGCGAGGGGGGACGAAAC ACGGCCTCTGAACTGGATGACGAAGCGACGGCACCGGCGCCGTCCCCGTC GCGAAACGCCCGCGGCCGCACCCGAGGGCGAGCGAGGAGCCTCTCCGACG CCGAAGCCTCCATGGTCGACGAGGACACGGCCATGGGAGATGTGGGAGAT GCTGGCGAGGGGGATGCTGGCGGGGGACCCGCGGGCGGCGGGGGGGGGGA CGGGGTCAGTGGGGGTGCAAAGGGCGGCGAGGGGGGACGAAACACGGCCT CTGAACTGGCCGCGAAGCTCAAGAAGAAGCGTCGACAAGCCAAGAGGAGA AATTACGTCGAGTTCCCCGCACACGAAAATTGAGCCGCGAAGCTCAAGAA GAAGCGTCGACAAGCCAAGAGGAGAAATTACGTCGAGTTCCCCGCACACG AAAATTGA back to top
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