mRNA_E-siliculosus-1a_M_contig9.16955.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16955.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16955.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16955.1 vs. uniprot
Match: D7FZC4_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZC4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 3.010e-45
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = -3 
Query:  431 SDKPWMVRVFRKFGSRNGDGGSMPEVKEAGEDVKTELCAGDVAAEAGINEHDVAERRPEVAPVSLVGCRSARSNPVLTPPFMGCGKRRKMMDATTTLPTTGLL 739
            SDKPWMVRVFRKFGSRNG  GSMPEVKEAGE+VK ELC GDVA+EAGI+EHDVAERRPEVAPV L GCRS RSNPVLTPPFMGCGKRRKMMDAT+TLPTTG+L
Sbjct:  497 SDKPWMVRVFRKFGSRNG--GSMPEVKEAGENVKAELCDGDVASEAGIDEHDVAERRPEVAPVPLDGCRSTRSNPVLTPPFMGCGKRRKMMDATSTLPTTGIL 597
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16955.1 vs. uniprot
Match: A0A6H5JBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.580e-19
Identity = 59/102 (57.84%), Postives = 63/102 (61.76%), Query Frame = -3 
Query:  431 DKPWMVRVFRKFGSRNGDGGSMPEVKEAGEDVKTELCAGDVAAEAGINEHDVAERRPEVAPVSLVGCRSARSNPVLTPPFMGCGKRRKMMDATTTLPTTGLL 736
            DKPWMVR+ RK GSRNG  GSMPE   AGE VK ELC GD  +EAG++EHDVAER               R       PFMGC KRRKMMDA TT  TTG L
Sbjct: 1308 DKPWMVRIVRKLGSRNG--GSMPEATGAGECVKRELCDGDAVSEAGMDEHDVAER--------------GRGTSASVSPFMGCRKRRKMMDALTTGATTGKL 1393
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16955.1 vs. uniprot
Match: D7FZC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 9.050e-19
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 3 
Query:  672 MDPPSPLREPNLRNTRTIHGLSLACRVQTSAFEVPRTPKTASRVQPGELHLSRRIRTIPSVA 857
            MDP   LR+PNLR  RTI GLSLACRVQTSAFEV +TPK   RVQPGELHLSRRI TIPSVA
Sbjct:    1 MDPS--LRDPNLRTIRTIQGLSLACRVQTSAFEVAQTPKIGRRVQPGELHLSRRIWTIPSVA 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZC4_ECTSI3.010e-4588.35EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZC4... [more]
A0A6H5JBR8_9PHAE8.580e-1957.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZC3_ECTSI9.050e-1979.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:378570..381917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size456
Model size3348
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16955.1prot_E-siliculosus-1a_M_contig9.16955.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 378974..379429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936379.530911-UTR-E-siliculosus-1a_M_contig9:378569..3789731622936379.530911-UTR-E-siliculosus-1a_M_contig9:378569..378973Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 378570..378973 +
1696251051.356886-UTR-E-siliculosus-1a_M_contig9:378569..3789731696251051.356886-UTR-E-siliculosus-1a_M_contig9:378569..378973Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 378570..378973 +
1622936379.5715144-UTR-E-siliculosus-1a_M_contig9:379429..3819171622936379.5715144-UTR-E-siliculosus-1a_M_contig9:379429..381917Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 379430..381917 +
1696251051.3789985-UTR-E-siliculosus-1a_M_contig9:379429..3819171696251051.3789985-UTR-E-siliculosus-1a_M_contig9:379429..381917Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig9 379430..381917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936379.547079-CDS-E-siliculosus-1a_M_contig9:378973..3794291622936379.547079-CDS-E-siliculosus-1a_M_contig9:378973..379429Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 378974..379429 +
1696251051.3691335-CDS-E-siliculosus-1a_M_contig9:378973..3794291696251051.3691335-CDS-E-siliculosus-1a_M_contig9:378973..379429Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 378974..379429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16955.1

>prot_E-siliculosus-1a_M_contig9.16955.1 ID=prot_E-siliculosus-1a_M_contig9.16955.1|Name=mRNA_E-siliculosus-1a_M_contig9.16955.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=152bp
MVLLQRTYHNNPVVGNVVVASIIFRLFPQPMKGGVKTGLLRADLQPTRET
GATSGLLSATSCSLMPASAATSPAQSSVLTSSPASLTSGMDPPSPLREPN
LRNTRTIHGLSLACRVQTSAFEVPRTPKTASRVQPGELHLSRRIRTIPSV
A*
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mRNA from alignment at E-siliculosus-1a_M_contig9:378570..381917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16955.1 ID=mRNA_E-siliculosus-1a_M_contig9.16955.1|Name=mRNA_E-siliculosus-1a_M_contig9.16955.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:378570..381917+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGCGATGAACCGGGGTAGGTTTGAAACGTCCAGATCGCAATATTGCGTG
GCGAACAAAATTCCTAAAGGCGCTTCCTTCAACGTCAAAAATTACCACTC
TGAAAGAAAAGCACACATGATGGAGAGAACCAAAGCTGCTCACGCTGCTT
CGCTGTTCATGAGTCGTGCGTCTACCTTGCCTCTCTCGAACCATAACTAC
ACTACGTCGCAACGTTGACGCTGTCGTACCGGTGAGTGCTTGCGTTCCAC
CACGACAATATGGTTTCTGTCAAAAAGAATGAAACCCAGCTACCGGGCCT
AAATACATGAGCACGTACAACGCCGCAAGATTCTAAGAACAAGAATCGCC
GCGCTCCCTGAGTGACTGCACCAACATGGCGAGGCACGGCAGTGGACCTC
GAACATGGTGCTCCTCCAGCGTACCTATCACAATAATCCTGTCGTTGGTA
ACGTCGTCGTAGCGTCCATCATCTTTCGTCTTTTTCCGCAGCCCATGAAG
GGTGGGGTCAAAACTGGGTTGCTTCGTGCTGACCTGCAGCCGACCAGAGA
GACCGGTGCCACCTCAGGCCTTCTCTCCGCGACATCGTGCTCGTTAATGC
CTGCCTCTGCGGCGACATCCCCGGCGCAGAGTTCCGTCTTGACATCTTCT
CCGGCTTCCTTGACTTCAGGCATGGACCCACCATCACCATTGCGGGAGCC
AAATTTGCGAAACACTCGAACCATCCACGGTTTGTCGCTGGCGTGCCGGG
TGCAAACCTCCGCCTTCGAGGTACCACGAACGCCGAAAACCGCCAGCAGG
GTGCAACCCGGCGAGCTGCATCTCTCTCGACGGATACGGACCATTCCTTC
GGTAGCGTGACGCCCGCAAAACTCACCCTTCTTGTTGCCTGCCCTTCCGA
ACGATGGCCATTCATTGCACAATGGATGACTGCACCTCAGCCCTCTGACC
GCCACCATCCCCTCTGTGGCATGCGGTCCACAGAACTCCGGCCTTGTGAT
TGTCCACACCACATAGTAGCGTCTTGTTCTGGGGATTTCAGGCGTGACCT
GCAATGATACTCAGGTAGAAGGGCGCATGACTGCTGTACAGCAGTGGAAG
GCTGGGTGAATCGCGCAGTTGCTGTTGTAGCATCACCGTAGACCTCGATT
TTCGAAGAAGCACATCTTCAACAGGGTAGGAAAAAGTGAACACCATCTTC
TAACGATGCGACGTACGCCGGCACAGTTCAAACTCGAGGTTTCGGTGATT
GGGCCCAAATTTCAAGGAATTCCTGGAGATCAAGTTCGAAATGTGGGGAA
AAAAGGTTTATTCGCCACATACACCAGATGGATATTTCTTCCCGATGAAA
TCATGGGAGGGAACCCCAGCTCCCGATCATAATTTCATCAGGAAGGATCC
TCAGGACTCGTGCAAATGCGCTCTCCGCGGGAGTGCCACTGGAGTGCCGA
AGTATCACCAACGGTCAACATACTCGCCCCGCTACAAGCGGTATCGCCAA
AACGATCGGCACCTAACAGCACTGCCGCCGGCATGAATGACCAGTGGTGG
CGGACACACATCTACACTGGATAGTCCATCGGGCAGCGCGGTATGGATAG
GGGCTGAAGCACAGCAAAAAAACGGAGCGCCAACCATCCTCTCTTGTGGA
CACTTTATCATGATGTCAATCCGATGTCTCGTGTTTCGCTTGCTGGAGGC
GGCGCTCGTAATGTGTTTGCTTCCCGCGTCCCTCCCTCGGACATGGTCCG
GCAGAAGACACCATCAATGTCGTTCTGAGTCTCACATCAACAGGACCACC
GCCTGTCGCCTTCGCTCTCTGCTGCTGATACTGCTGCTGCTGCCACTCCC
CTATCGATCGTTCATCCATATTTTTGCCACTTGCACCATCGTGCGATTTG
CCAACGGCAAGAGGAGCGCATCGGGTAGGCAGACGTTGTCTGCTATTACA
TACTGTGTTGGATATCGAATCGAATATTTCGACGCATAGTATCGACTTCT
CGGGTCGATATCGGGCATCGAAGTGTCGGTATCGGGTATCAAGAATCGAA
GAATATGACCTTCTCGACCAAAAAAAAACATTTACATCCCGCGGAACTCT
CGACGTTCAACACGAGTCCCCTAAAGTTGCGCACCAACCCAACCCACAGC
TGCACCATGCGTCACACAGCACCTCACAGCTCAGTACCGCTCAACAGCAT
ACAGACATAGCTGCATGAGTGGCGTGAAGGAGGTCCAAAATTGCGTGGTA
TTCAACGAAAAGCGAGGAGCAAAGCAGCGGTAGAAAACAGTACAAGCGGC
TCTCCGTTCATAAACTCATTGTGAGAGCGTGGCTATCTACGATGAGCTAT
TGTTGTGATGTGCGATCATAACTGGAACCCGAGCCTCGAAGTACTCTCGG
TACTTCAAAAAAAGACGACACTCTAGCTGCATTTTCCGATTGTTGTGCAC
ACACATGCTTCGTGAAAAACGGTTGGCTTTGCACATCCGGTTTCGGAGGC
CTTGTTCATTGGTAATTTTGACGGGAAATGAAGCAATGTTGCTCTCATTT
TCGCGCTCGATATTGCATCGACAAGATTGAGTCGATATCCAAAACCAATG
TCTGCGCAGCTTGTCGTAGCCACTCAAGTTCGAACTTCCGAAGCGCGCGG
CTATGCCCTGGCCGATCAGGCATGCCTGAGATATTGCCCGAAGGCCTCTT
CTGTCAACCCTCTCAGGCATGCCTGACTTGGTGCCTGAGAGGGCGTTTCC
ATCAGAATATATTTGCCTGAGAACGCGTTCAGTTGTCCGACTGCTCCTAC
CTCAAGCCAGGCAGCTCCAGGCAGCAGAGAACAACAGCCACGACGACAAG
CCCCGCATGACCCGTCGGCATGGTTAAGAAATACTGGAAAACTTGAAGGT
AGTATACGTTTTGTTTCAGGTAAAAAGTTCAGGCGAATATCAGGCGTCTA
GGGCATGGAATTGTACGTCAGTTAAATGCCTTACACTTTGCCTGGGTCCA
TTTTTTTTCCAAAACAACGCCGTCGGCGTGCCTGATCGGCCCAGAGGCTT
AGTTTCACGTGGGCGGACACGTCATGATTTGGGGCGCGTAGGACGCACAT
ATTTTCGGTCCTCGCTCCTAGGCCGGCAAGATCACAACCTGAGGAGAATT
ACACAGCCAAAAGAATACGGAACCGGGCCCTACATGAGGGCAATTATTAT
GTTGACCGGAAGAAATAAAAAGAAAACATCAATAAATGTTTGAGGGGTAG
AGGCAGGTAGATATCTGTCCTCCCACCTCACATGTCGATTATGCAGGACA
TTATGCACTGATGGCCACGCCGCCGAGGGGGAATCCCCCGAAAGATGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:378570..381917+

>mRNA_E-siliculosus-1a_M_contig9.16955.1 ID=mRNA_E-siliculosus-1a_M_contig9.16955.1|Name=mRNA_E-siliculosus-1a_M_contig9.16955.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:378570..381917+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGCTCCTCCAGCGTACCTATCACAATAATCCTGTCGTTGGTAACGT
CGTCGTAGCGTCCATCATCTTTCGTCTTTTTCCGCAGCCCATGAAGGGTG
GGGTCAAAACTGGGTTGCTTCGTGCTGACCTGCAGCCGACCAGAGAGACC
GGTGCCACCTCAGGCCTTCTCTCCGCGACATCGTGCTCGTTAATGCCTGC
CTCTGCGGCGACATCCCCGGCGCAGAGTTCCGTCTTGACATCTTCTCCGG
CTTCCTTGACTTCAGGCATGGACCCACCATCACCATTGCGGGAGCCAAAT
TTGCGAAACACTCGAACCATCCACGGTTTGTCGCTGGCGTGCCGGGTGCA
AACCTCCGCCTTCGAGGTACCACGAACGCCGAAAACCGCCAGCAGGGTGC
AACCCGGCGAGCTGCATCTCTCTCGACGGATACGGACCATTCCTTCGGTA
GCGTGAATGGTGCTCCTCCAGCGTACCTATCACAATAATCCTGTCGTTGG
TAACGTCGTCGTAGCGTCCATCATCTTTCGTCTTTTTCCGCAGCCCATGA
AGGGTGGGGTCAAAACTGGGTTGCTTCGTGCTGACCTGCAGCCGACCAGA
GAGACCGGTGCCACCTCAGGCCTTCTCTCCGCGACATCGTGCTCGTTAAT
GCCTGCCTCTGCGGCGACATCCCCGGCGCAGAGTTCCGTCTTGACATCTT
CTCCGGCTTCCTTGACTTCAGGCATGGACCCACCATCACCATTGCGGGAG
CCAAATTTGCGAAACACTCGAACCATCCACGGTTTGTCGCTGGCGTGCCG
GGTGCAAACCTCCGCCTTCGAGGTACCACGAACGCCGAAAACCGCCAGCA
GGGTGCAACCCGGCGAGCTGCATCTCTCTCGACGGATACGGACCATTCCT
TCGGTAGCGTGA
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