mRNA_E-siliculosus-1a_M_contig9.16927.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16927.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16927.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16927.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 7.500e-52
Identity = 125/137 (91.24%), Postives = 126/137 (91.97%), Query Frame = 1 
Query:   16 GNTGTAAPASHLTEASSTMVLPGNLSSTASFVLSPASREAQQQHVELQLPAKLGGXXXXXXXXXXXXXXX-LAAAEAAPLGRMDLRGGAGAGPAAPFMANFDRALSENTSSSDEGGEDDLNLAAAGXDGGGKDSAGT 423
            GNTGTAAPASHLTEASSTMVLP NLSSTASFVLSPASREA+QQHVELQLPAKLGGXXXXXXXXXXXX    LA AEAAPLGRMDLRGGAGAGPAAPFMANFDRALSENTSSSDEGGEDDLNLAAAG    G DSAGT
Sbjct: 1864 GNTGTAAPASHLTEASSTMVLPENLSSTASFVLSPASREAKQQHVELQLPAKLGGXXXXXXXXXXXXDGRGLAVAEAAPLGRMDLRGGAGAGPAAPFMANFDRALSENTSSSDEGGEDDLNLAAAG----GNDSAGT 1996
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16927.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.440e-42
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:   19 NTGTAAPASHLTEASSTMVLPGNLSSTASFVLSPASREAQQQHVELQLPAKLGGXXXXXXXXXXXXXXX-LAAAEAAPLGRMDLRGGAGAGPAAPFMANFDRALSENTSSS 348
            NTGTAAPASHLTEASSTMVLPGNLSSTASFVLSPASREAQQQHVELQLPAKLG XXXXXXXXXXXXXXX LAAAEAAPLGRMDLRGGAGAGPAAPFMANFDRALSENTSSS
Sbjct: 1256 NTGTAAPASHLTEASSTMVLPGNLSSTASFVLSPASREAQQQHVELQLPAKLGXXXXXXXXXXXXXXXXXLAAAEAAPLGRMDLRGGAGAGPAAPFMANFDRALSENTSSS 1366
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE7.500e-5291.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQY7_ECTSI1.440e-4298.20TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:41565..41998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size432
Model size434
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759
EggNOG free text desc.determination of stomach left/right asymmetry
Seed eggNOG ortholog2880.D8LQY7
Seed ortholog evalue1.4e-37
Seed ortholog score162.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936373.3937304-CDS-E-siliculosus-1a_M_contig9:41564..419961622936373.3937304-CDS-E-siliculosus-1a_M_contig9:41564..41996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 41565..41996 +
1696251048.3820403-CDS-E-siliculosus-1a_M_contig9:41564..419961696251048.3820403-CDS-E-siliculosus-1a_M_contig9:41564..41996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 41565..41996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16927.1prot_E-siliculosus-1a_M_contig9.16927.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 41565..41996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16927.1

>prot_E-siliculosus-1a_M_contig9.16927.1 ID=prot_E-siliculosus-1a_M_contig9.16927.1|Name=mRNA_E-siliculosus-1a_M_contig9.16927.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=144bp
NNTGGGNTGTAAPASHLTEASSTMVLPGNLSSTASFVLSPASREAQQQHV
ELQLPAKLGGGGGAREDDGGGDGRRLAAAEAAPLGRMDLRGGAGAGPAAP
FMANFDRALSENTSSSDEGGEDDLNLAAAGGDGGGKDSAGTAKG
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mRNA from alignment at E-siliculosus-1a_M_contig9:41565..41998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16927.1 ID=mRNA_E-siliculosus-1a_M_contig9.16927.1|Name=mRNA_E-siliculosus-1a_M_contig9.16927.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=434bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:41565..41998+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACAACACTGGCGGCGGCAACACCGGAACCGCCGCCCCCGCCTCGCACCT
GACGGAAGCATCATCGACGATGGTGCTGCCCGGGAATCTCAGCAGCACGG
CGTCGTTTGTCTTGTCCCCCGCCAGCCGCGAGGCTCAGCAGCAGCATGTG
GAGCTACAGCTCCCGGCCAAGCTCGGCGGCGGTGGCGGCGCGCGCGAGGA
CGACGGGGGCGGGGACGGCCGGAGGCTGGCGGCGGCTGAGGCCGCGCCCC
TCGGAAGGATGGACCTCCGTGGTGGCGCCGGCGCCGGCCCAGCGGCGCCT
TTCATGGCCAACTTCGACCGCGCACTGAGCGAGAACACGAGCAGCTCGGA
CGAGGGGGGCGAAGACGACTTAAACCTTGCCGCCGCCGGCGGCGACGGCG
GCGGCAAGGACTCTGCCGGCACCGCCAAGGGCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:41565..41998+

>mRNA_E-siliculosus-1a_M_contig9.16927.1 ID=mRNA_E-siliculosus-1a_M_contig9.16927.1|Name=mRNA_E-siliculosus-1a_M_contig9.16927.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:41565..41998+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AACAACACTGGCGGCGGCAACACCGGAACCGCCGCCCCCGCCTCGCACCT
GACGGAAGCATCATCGACGATGGTGCTGCCCGGGAATCTCAGCAGCACGG
CGTCGTTTGTCTTGTCCCCCGCCAGCCGCGAGGCTCAGCAGCAGCATGTG
GAGCTACAGCTCCCGGCCAAGCTCGGCGGCGGTGGCGGCGCGCGCGAGGA
CGACGGGGGCGGGGACGGCCGGAGGCTGGCGGCGGCTGAGGCCGCGCCCC
TCGGAAGGATGGACCTCCGTGGTGGCGCCGGCGCCGGCCCAGCGGCGCCT
TTCATGGCCAACTTCGACCGCGCACTGAGCGAGAACACGAGCAGCTCGGA
CGAGGGGGGCGAAGACGACTTAAACCTTGCCGCCGCCGGCGGCGACGGCG
GCGGCAAGGACTCTGCCGGCACCGCCAAGGGCAACAACACTGGCGGCGGC
AACACCGGAACCGCCGCCCCCGCCTCGCACCTGACGGAAGCATCATCGAC
GATGGTGCTGCCCGGGAATCTCAGCAGCACGGCGTCGTTTGTCTTGTCCC
CCGCCAGCCGCGAGGCTCAGCAGCAGCATGTGGAGCTACAGCTCCCGGCC
AAGCTCGGCGGCGGTGGCGGCGCGCGCGAGGACGACGGGGGCGGGGACGG
CCGGAGGCTGGCGGCGGCTGAGGCCGCGCCCCTCGGAAGGATGGACCTCC
GTGGTGGCGCCGGCGCCGGCCCAGCGGCGCCTTTCATGGCCAACTTCGAC
CGCGCACTGAGCGAGAACACGAGCAGCTCGGACGAGGGGGGCGAAGACGA
CTTAAACCTTGCCGCCGCCGGCGGCGACGGCGGCGGCAAGGACTCTGCCG
GCACCGCCAAGGGC
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