mRNA_E-siliculosus-1a_M_contig9.16926.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16926.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16926.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16926.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.190e-40
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:  109 SGGDTSDTSVAGGDVSSLHGDEAPSVPGGGVYGSRQHCDAFADNSDHSDDDGGGNTNVWSDGVFESSGNSTPGAAGRVRA 348
            SGGDTSDTSVAGG+VSSLHGDE PS+PGGGVYGSRQHCDAFADNSDHSDDDGGGNTNVWSDGVFESSGNSTPGAAGRVRA
Sbjct: 1643 SGGDTSDTSVAGGEVSSLHGDEVPSIPGGGVYGSRQHCDAFADNSDHSDDDGGGNTNVWSDGVFESSGNSTPGAAGRVRA 1722
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16926.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 7.590e-40
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:   19 SGDGTSSSSFSXXXXXXXXXXXXXXXXXXGSGGDTSDTSVAGGDVSSLHGDEAPSVPGGGVYGSRQHCDAFADNSDHSDDDGGGNTNVWSDGVFESSGNSTPGAAGRVRAA 351
            SGDGTSSSS  XXXXXXXXXXXXXXXXXX SGGDTSDTSVAGG+VSSLHGDEAPS+PGG VYGSRQHCDAFADNSDHSDD GGGNTNVWSDGVFESSGNSTPGAAGRVRAA
Sbjct:  986 SGDGTSSSSXXXXXXXXXXXXXXXXXXXXXSGGDTSDTSVAGGEVSSLHGDEAPSIPGGRVYGSRQHCDAFADNSDHSDD-GGGNTNVWSDGVFESSGNSTPGAAGRVRAA 1095
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE1.190e-4096.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQY7_ECTSI7.590e-4093.69TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:40815..41180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size366
Model size367
Exons1
Ec32 orthologEc-07_002130.1
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759
EggNOG free text desc.determination of stomach left/right asymmetry
Seed eggNOG ortholog2880.D8LQY7
Seed ortholog evalue9.6e-35
Seed ortholog score152.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936373.3470883-CDS-E-siliculosus-1a_M_contig9:40814..411801622936373.3470883-CDS-E-siliculosus-1a_M_contig9:40814..41180Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 40815..41180 +
1696251048.3713953-CDS-E-siliculosus-1a_M_contig9:40814..411801696251048.3713953-CDS-E-siliculosus-1a_M_contig9:40814..41180Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 40815..41180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16926.1prot_E-siliculosus-1a_M_contig9.16926.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 40815..41180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16926.1

>prot_E-siliculosus-1a_M_contig9.16926.1 ID=prot_E-siliculosus-1a_M_contig9.16926.1|Name=mRNA_E-siliculosus-1a_M_contig9.16926.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=122bp
SYSSSDSGDGTSSSSFSSSSLWSSSTVFSGSRPTSGSGGDTSDTSVAGGD
VSSLHGDEAPSVPGGGVYGSRQHCDAFADNSDHSDDDGGGNTNVWSDGVF
ESSGNSTPGAAGRVRAAATAAA
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mRNA from alignment at E-siliculosus-1a_M_contig9:40815..41180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16926.1 ID=mRNA_E-siliculosus-1a_M_contig9.16926.1|Name=mRNA_E-siliculosus-1a_M_contig9.16926.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:40815..41180+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTTATTCTTCCTCGGACAGCGGGGACGGCACGTCCTCGTCGTCCTTCTC
GTCGTCCTCGCTGTGGTCGTCCTCGACCGTGTTTTCGGGGTCCCGCCCGA
CCTCCGGGAGCGGCGGCGACACCAGCGACACCAGCGTCGCCGGCGGCGAC
GTGTCGAGCCTCCACGGCGACGAGGCCCCCTCCGTCCCGGGCGGGGGGGT
TTACGGCAGCCGGCAGCACTGCGACGCGTTCGCCGACAACAGCGACCACA
GCGACGACGACGGCGGCGGCAACACAAACGTCTGGAGCGACGGCGTGTTC
GAGAGCAGCGGGAATAGCACCCCCGGAGCGGCCGGAAGGGTTCGTGCCGC
CGCCACCGCCGCCGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:40815..41180+

>mRNA_E-siliculosus-1a_M_contig9.16926.1 ID=mRNA_E-siliculosus-1a_M_contig9.16926.1|Name=mRNA_E-siliculosus-1a_M_contig9.16926.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:40815..41180+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTTATTCTTCCTCGGACAGCGGGGACGGCACGTCCTCGTCGTCCTTCTC
GTCGTCCTCGCTGTGGTCGTCCTCGACCGTGTTTTCGGGGTCCCGCCCGA
CCTCCGGGAGCGGCGGCGACACCAGCGACACCAGCGTCGCCGGCGGCGAC
GTGTCGAGCCTCCACGGCGACGAGGCCCCCTCCGTCCCGGGCGGGGGGGT
TTACGGCAGCCGGCAGCACTGCGACGCGTTCGCCGACAACAGCGACCACA
GCGACGACGACGGCGGCGGCAACACAAACGTCTGGAGCGACGGCGTGTTC
GAGAGCAGCGGGAATAGCACCCCCGGAGCGGCCGGAAGGGTTCGTGCCGC
CGCCACCGCCGCCGCCTCTTATTCTTCCTCGGACAGCGGGGACGGCACGT
CCTCGTCGTCCTTCTCGTCGTCCTCGCTGTGGTCGTCCTCGACCGTGTTT
TCGGGGTCCCGCCCGACCTCCGGGAGCGGCGGCGACACCAGCGACACCAG
CGTCGCCGGCGGCGACGTGTCGAGCCTCCACGGCGACGAGGCCCCCTCCG
TCCCGGGCGGGGGGGTTTACGGCAGCCGGCAGCACTGCGACGCGTTCGCC
GACAACAGCGACCACAGCGACGACGACGGCGGCGGCAACACAAACGTCTG
GAGCGACGGCGTGTTCGAGAGCAGCGGGAATAGCACCCCCGGAGCGGCCG
GAAGGGTTCGTGCCGCCGCCACCGCCGCCGCC
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