mRNA_E-siliculosus-1a_M_contig9.16925.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16925.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI) HSP 1 Score: 1209 bits (3128), Expect = 0.000e+0 Identity = 754/933 (80.81%), Postives = 758/933 (81.24%), Query Frame = 1
Query: 1 SPMIGWAKAAGTGGTLEGRRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTALVSGSGXXXXXXXXWRRGEWGGGERLPSASSAMKTMEASGSNARSARRKSKGMGQASLSMWCNRAGGLNGPLSSVGRDTRGRFFWAGGATPAAXXXXXXXXXXXXRSTSTSSPNSRGSLLGGAGGPLPTALSGVNRGFNGGFWDSFSTAGSGFCSSGQFSQSFWGPGYGNGSARXXXXXXXXXXXXXXXXXXXXXGVPYVDHGSGYRFGSGSVGYAGGGDDGAXXVXXXXGVTRPSAKPNKPTAXXXXXXXXXPGTTXXXXADGRAVGGAAAAGLARRPLGGAADGERGTAASRPTSRGSSKGKGRRXXXXXXXXXXXXWEAPAAGGAAATATEEGKDGMTVAEAVERGRERERARAWEAEVEWRSALPARLEALAKLASMERIGEEPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLAYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCASARLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEARVNYLRXXXXXXXXXXXXXXXXXXXXXXXAVVVGEQGDYLTAENYHRLALEQRRKAGACGPDDFAPFCYNLALVVGTNARKGPPEKLDQGHREAKALMTEALMVYQRSLPPDHPETADCMDKLAAAVAMTGDLTGAEILHREXXXXXXXXXXXXXXXXXEVLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIRARDAVSICHSNSHSSSDRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSLPNSRGRNGFFASGG 2799
SPMIG AK AGTGG+ E RRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTALVSGSGXXXXXXXXWRRGEWGGGERLPSASSAMKTMEASGSNARSARRKSKG NGPLSSVGRDTRGRFFWAGGATPAA XXXXXXXX RSTSTSSPNSRGSLLGGA GPLPTALSGVNRGFNGGFWDSFSTAGSGFCSSGQFSQSFWGPGYGNGS XXXXXXXXXXXXXXXXXXXXXGVPYVD GSGYRFGSGSVGYA XXXXXXX GTT ADGRAVGG AAAGLARRPLGGAADG+RGTAASRPTSRGSSKGKGRRXXXXXXXXXXXX TATEEGKDGMTVAEA+ERGRERE AWEAEVEWRSALPARLEALAKLASMERIGEEPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYL YTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCASARLAHEEATLLCQWALHVREECLGPK LDTADTLRKLGGLLHRQGLLEEARVNYLR AVVVGEQGDYLTAENYHRLALEQRRKAGACGPDDFAPFCYNLALVVGTNARKGPPEKLDQGHREAKALMTEALMVYQRSLPPDHPETADCMDKLAAAVAMTGDLTGAEILHREXXXXXXXXXXXXXXXXX VLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR FDSVTSAGGSSLFGS+PNSRGRNGFFASGG
Sbjct: 2 SPMIGSAKVAGTGGS-EARRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTALVSGSGXXXXXXXXWRRGEWGGGERLPSASSAMKTMEASGSNARSARRKSKG----------------NGPLSSVGRDTRGRFFWAGGATPAAGGXXXXXXXXP-RSTSTSSPNSRGSLLGGARGPLPTALSGVNRGFNGGFWDSFSTAGSGFCSSGQFSQSFWGPGYGNGSVLXXXXXXXXXXXXXXXXXXXXXGVPYVDQGSGYRFGSGSVGYA--------------------------XXXXXXXXXCGWGTTTA--ADGRAVGGEAAAGLARRPLGGAADGKRGTAASRPTSRGSSKGKGRRXXXXXXXXXXXXXXXXXXXXXX-TATEEGKDGMTVAEAMERGREREXXXAWEAEVEWRSALPARLEALAKLASMERIGEEPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLVYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCASARLAHEEATLLCQWALHVREECLGPKDLDTADTLRKLGGLLHRQGLLEEARVNYLRARDVFVEVLGPDHEDVGSALNLLAVVVGEQGDYLTAENYHRLALEQRRKAGACGPDDFAPFCYNLALVVGTNARKGPPEKLDQGHREAKALMTEALMVYQRSLPPDHPETADCMDKLAAAVAMTGDLTGAEILHREXXXXXXXXXXXXXXXXXXVLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR-----------------------------------------------------------------------FDSVTSAGGSSLFGSVPNSRGRNGFFASGG 816
BLAST of mRNA_E-siliculosus-1a_M_contig9.16925.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE) HSP 1 Score: 1137 bits (2942), Expect = 0.000e+0 Identity = 796/1178 (67.57%), Postives = 806/1178 (68.42%), Query Frame = 1
Query: 1 SPMIGWAKAAGTGGTLEGRRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTALVSGSGXXXXXXXX---WRRGEWGGGERLPSASSAMKTMEASGSNARSARRKSKGMGQASLSMWCNRAGGLNGPLSSVGRDTRGRFFWAGGATPAAXXXXXXXXXXXXRSTSTSSPNSRGSLLGGAGGPLPTALSGVNRGFNGGFWDSFSTAGSGFCSSGQFSQSFWGPGYGNG------SARXXXXXXXXXXXXXXXXXXXXXGVPYVDHGSGYRFGSGSVGYAG------------------------------------------------------------------------------------------------------GG---------------------------------------DDGAXXVXXXXGVTRPSAKPNKPTAXXXXXXXXX----PGTTXXXXADGRAVGGAAAAGLARRPLGGAADGERGTAASRPTSRGSSKGKGRRXXXXXXXXXXXXWEAPAAGGAAATATEEGKDGMTVAEAVERGRERERARAWEAEVEWRSALPARLEALAKLASMERIGE-------------------------EPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLAYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCA-------------------------------------------------------------------SARLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEARVNYLRXXXXXXXXXXXXXXXXXXXXXXXAVVVGEQGDYLTAENYHRLALEQRRKAGACGPDDFAPFCYNLALVVGTNARKGPPEKLDQGHREAKALMTEALMVYQRSLPPDHPETADCMDKLAAAVAMTGDLTGAEILHREXXXXXXXXXXXXXXXXXEVLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIRARDAVSICHSNSHSSSDRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSLPNSRGRNGFFASG 2796
SPMIG AKAAGTGGT EGRRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTALVSG XXXXXXXX WRRGEWGGGERLPSASSAMKTMEASGSNARSARRKSKGMGQASLS +NGPLSSVGRDT+G+FFWAGGATPAA XXXXXXXXX RSTSTSSPNSRGSLLG AGGPLPTALSGVNRGFNGGFWDSFSTAGSGFCSSGQ+SQSFWGPGY SAR XXXXXXXXXXXXXXXXXX GVP+VD GSGYRF SG+VGYAG GG DDGA V GV RP AKPNKPTA XXXXXXXX PGTTXXXX D RAVGG AAAGLARRPLGGAADGERGTAAS PTSRGSSKGK XXXXXXXXXXXX E+GK+GMTVAEAV RGR AWEAEVEWRSALPARLEALAKLASMERIGE EPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLAYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCA SARLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEARVNYLR AVVVGEQGDYLTAENYHRLALEQRRKAGACGPDDFAPFCYNLALVVGTNARKGPPEKLDQGHREAKALMTEALMVYQRSLPPDHPETADCMDKLAAAVAMTGDLTGAEILHRE XXXXXXXX EVLFNLSAVVGAQRGRLGETENILR GKLHDIIRARDAVSICHSN+ S XXXXXXXXXXXXXXXXXXXXXXXXXXX YNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGS+PNSRGRNGFFASG
Sbjct: 65 SPMIGSAKAAGTGGTQEGRRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTALVSGXXXXXXXXXXXXXWRRGEWGGGERLPSASSAMKTMEASGSNARSARRKSKGMGQASLSY-------VNGPLSSVGRDTKGKFFWAGGATPAAGXXXXXXXXXP-RSTSTSSPNSRGSLLGVAGGPLPTALSGVNRGFNGGFWDSFSTAGSGFCSSGQYSQSFWGPGYXXXXXXXXXSARYGXXXXXXXXXXXXXXXXXXAGVPHVDQGSGYRFSSGNVGYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDKARSRVADPDSYRSGGGAAVVGGIPPLPTPAXXXXXXXXXXXXXXGKLQRRKNGRPPPAPAEDDGAGGVEI--GV-RPLAKPNKPTAAXXXXXXXXXXXXPGTTXXXXGD-RAVGGEAAAGLARRPLGGAADGERGTAASWPTSRGSSKGKXXXXXXXXXXXXXXXXXXXXXXXX--XXXEKGKEGMTVAEAVGRGRXXXXXXAWEAEVEWRSALPARLEALAKLASMERIGEGAFGQVGLTSCLRCLMLAVLPVVAAEPSELRKAWMWNDRPGVAKMLNDVADSMAAAGFHDQAADLFERCVEIYLAYTGPEGHGEIAEALNDLGYVLWDACANPVFIGQDVAEDMACTLMANAEEVFRLALFECGSCPGGDHPFAATCLSNLADCARLTWLTRHAALPPXXXXXXXXXRRAECLWSEEFFEISVVCAKYCSPPSPSPSPPCLLQPETTHSKIQSARLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEARVNYLRACDVFVEVLGPDHEDVGSALNLLAVVVGEQGDYLTAENYHRLALEQRRKAGACGPDDFAPFCYNLALVVGTNARKGPPEKLDQGHREAKALMTEALMVYQRSLPPDHPETADCMDKLAAAVAMTGDLTGAEILHREALSSMEXXXXXXXXRIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXXGKLHDIIRARDAVSICHSNNSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----YNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPNSRGRNGFFASG 1223 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.16925.1 >prot_E-siliculosus-1a_M_contig9.16925.1 ID=prot_E-siliculosus-1a_M_contig9.16925.1|Name=mRNA_E-siliculosus-1a_M_contig9.16925.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1102bp MIGWAKAAGTGGTLEGRRQRGLPPPSPLFSMSNQTSVFTPGAGTPRFMTAback to top mRNA from alignment at E-siliculosus-1a_M_contig9:30955..42900+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.16925.1 ID=mRNA_E-siliculosus-1a_M_contig9.16925.1|Name=mRNA_E-siliculosus-1a_M_contig9.16925.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=11946bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:30955..42900+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:30955..42900+ >mRNA_E-siliculosus-1a_M_contig9.16925.1 ID=mRNA_E-siliculosus-1a_M_contig9.16925.1|Name=mRNA_E-siliculosus-1a_M_contig9.16925.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6612bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:30955..42900+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |