mRNA_E-siliculosus-1a_M_contig89.16902.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16902.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16902.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16902.1 vs. uniprot
Match: A0A6H5KJN5_9PHAE (DUF2451 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN5_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.760e-65
Identity = 120/146 (82.19%), Postives = 125/146 (85.62%), Query Frame = 1 
Query:    4 GGEELEAEEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAFEGLRQLVDLYLYCALTLFCPQWAID--ALYGFGDEELVPTPEEQEGLTALKSFLSRVSHDLSNPKPAANTGNNNGDGSRETSPAHSPERSSSTGGKDG 435
            GGEELEAEEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAF GLRQLVDLYLYCALTLFCP+WAID  +          P   ++ G TALKSFLSRVSHDLSNPK AA +GNNNGDGSRETSPAHSPERSSS GGKDG
Sbjct:   84 GGEELEAEEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAFGGLRQLVDLYLYCALTLFCPEWAIDGPSTASATRSWCRPRRSKRRGFTALKSFLSRVSHDLSNPKSAAGSGNNNGDGSRETSPAHSPERSSSAGGKDG 229
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16902.1 vs. uniprot
Match: A0A836CNI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.510e-25
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   25 EEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAFEGLRQLVDLYLYCALTLFCPQWAIDALYGFGDEELVPTPEEQEGLTALKSFLSRV 312
            E  RYGS WVVTQA+LNG+ARY GH LQ+M L+RP A  AF GL  L DLYLYC  TLF P   +  LYG G+E  +P   EQE    LK F+ RV
Sbjct: 1281 EVDRYGSKWVVTQAALNGIARYTGHYLQMMTLLRPVAGDAFRGLCGLADLYLYCVFTLFAPPARVAGLYGVGEERHMPLVSEQEEFVDLKDFMQRV 1376
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJN5_9PHAE1.760e-6582.19DUF2451 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CNI9_9STRA6.510e-2557.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:545362..548467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size624
Model size626
Exons5
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16902.1prot_E-siliculosus-1a_M_contig89.16902.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 545362..548467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936355.1936896-CDS-E-siliculosus-1a_M_contig89:545361..5455641622936355.1936896-CDS-E-siliculosus-1a_M_contig89:545361..545564Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 545362..545564 -
1696251040.2083242-CDS-E-siliculosus-1a_M_contig89:545361..5455641696251040.2083242-CDS-E-siliculosus-1a_M_contig89:545361..545564Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 545362..545564 -
1622936355.2059433-CDS-E-siliculosus-1a_M_contig89:545866..5460111622936355.2059433-CDS-E-siliculosus-1a_M_contig89:545866..546011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 545867..546011 -
1696251040.2209961-CDS-E-siliculosus-1a_M_contig89:545866..5460111696251040.2209961-CDS-E-siliculosus-1a_M_contig89:545866..546011Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 545867..546011 -
1622936355.2334404-CDS-E-siliculosus-1a_M_contig89:546746..5467991622936355.2334404-CDS-E-siliculosus-1a_M_contig89:546746..546799Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 546747..546799 -
1696251040.235959-CDS-E-siliculosus-1a_M_contig89:546746..5467991696251040.235959-CDS-E-siliculosus-1a_M_contig89:546746..546799Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 546747..546799 -
1622936355.2525544-CDS-E-siliculosus-1a_M_contig89:547386..5475741622936355.2525544-CDS-E-siliculosus-1a_M_contig89:547386..547574Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 547387..547574 -
1696251040.250015-CDS-E-siliculosus-1a_M_contig89:547386..5475741696251040.250015-CDS-E-siliculosus-1a_M_contig89:547386..547574Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 547387..547574 -
1622936355.2697484-CDS-E-siliculosus-1a_M_contig89:548432..5484671622936355.2697484-CDS-E-siliculosus-1a_M_contig89:548432..548467Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 548433..548467 -
1696251040.2607703-CDS-E-siliculosus-1a_M_contig89:548432..5484671696251040.2607703-CDS-E-siliculosus-1a_M_contig89:548432..548467Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 548433..548467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16902.1

>prot_E-siliculosus-1a_M_contig89.16902.1 ID=prot_E-siliculosus-1a_M_contig89.16902.1|Name=mRNA_E-siliculosus-1a_M_contig89.16902.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=208bp
GGGEELEAEEQRYGSGWVVTQASLNGVARYAGHALQIMALVRPAAPSAFE
GLRQLVDLYLYCALTLFCPQWAIDALYGFGDEELVPTPEEQEGLTALKSF
LSRVSHDLSNPKPAANTGNNNGDGSRETSPAHSPERSSSTGGKDGNASSS
RTPTTGDGDERRRRSSSGATRSAARRRGRSAAAPSPTATATAANSEAEGM
EREAAVST
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mRNA from alignment at E-siliculosus-1a_M_contig89:545362..548467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16902.1 ID=mRNA_E-siliculosus-1a_M_contig89.16902.1|Name=mRNA_E-siliculosus-1a_M_contig89.16902.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3106bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:545362..548467- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTGGTGGGGAAGAGCTCGAAGCAGAGGAACAGAGGTGAGTGGGCACCAA
ATAGTAACCACGGTCGGGGAGTCCGTAAGAGAGGGGGCTTGCTGTTGTAC
GTTGTCTGGAAGAAAGACGGCACCTTTTTTTCCCTCTCGGGGTGTGGAGC
TCGAAGTCGTTGGGCGGGAGTAGGGGAAGTGTCCGGCGGTCGTACGACGG
GGTTGCGAGGAGGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TACTGCTGTTGCTGTTGCTGTTGCTGCTTTTGTTTGTCTGTCGCCTTTCG
CTCGGGAAATCCGAGGCGTGTTGCATGCACGCAGACAAGAAAAATCGAGT
GGCAGTGAATGGCCGGCGCATTGTTGCGGTCGGTGTAGGCCGGGATCTTA
CTTCTCTTCTCTTCTCTTCTCCTCTCTTGACAGTTCGCGGGTTGGATCCC
GAAAGCCAAAGCTCTTTGTCTCCCGCCAAACATGGGGTTCGATCAACGGC
CGAAAGATGATATATATATATATTTTTTTTTGTCGTCACTTCAAGTCAGC
CCTCACAGCGCTTGTTGTGCCGTTTACTCCAACCCGTGGTCACACAGGAG
GGTAAGGATGCCAACTGCAATAATATGAGACCCCCTCCCGCCCAACTCCA
GCCGCGCAACCCTCCCCCTCGAGGGGGGAAACTACGGCAGCATTGGTAGA
TTTGCTCGCTGTGCGCAGTCGTTCTTGTATTGGAATCAGTCAGTGTGCTC
GAGAACAAACCCAAAAATATTGTTGACATGGGGTAGGGCTACGAACGTTT
GTAACAGTCGCGAGCAACTGCTTCGATTTTTTTTTTTTGTTGACTCCCAC
TACTTGTACGTGGTGGTTGATGGTCTGTTCTGTTTTTTCTCAGGTACGGG
TCGGGGTGGGTGGTGACCCAGGCCTCCCTGAACGGGGTGGCGAGGTACGC
CGGGCACGCGCTGCAGATCATGGCCCTCGTGCGGCCGGCGGCTCCTTCGG
CCTTCGAGGGGCTGAGGCAGCTGGTGGACTTGTACCTGTACTGCGCCCTC
ACGCTCTTCTGCCCGCAGTGGGCGATCGACGGTGTGTGATGCTGCCGCCG
CCGCTGTTGTCTCTGCTTCTGTTGCTGTTGCTGCTGCTGTCGTTGCTGCT
TCTTGTGTTATTGTTGCGTCCTAACGCTATTTCGCCCGCAGTGGGCGATT
GATGGTGTCTGCTGATACGTGAGCTGGTGCTGCTGGTGCTGCTGTTGTTG
CGCCTGCAAGTGTGCTTCTGCTGTTGTTGCGGTTGCTGTTGCTTCCGCTG
TATCCGTTGTTCGTTTTCTTGTCCTGTTGCCACGCCGTGCTCGAGAGACT
CCTTTCGATTTGAGCAGTTTTTGTTTTCGATAAGCCCAGATGAAGAAAGC
GCTTGCCCCCCCCCCTCCCTTCGCCTGTTTCAGCACGACGCTGCCGATAA
GAAGAAGGTTAGCGTGGTGTGCCTGTGCGCAAAAGAGGGCCGCGTATTCA
ATCGATTCATTTGGATGAAGTGGTCGCATTGTATGAATGTTCTCCTTTTC
CGTCCGCCGCCCCCCCACTTCCTCACCTTTTATTTTGTTTGTGTGGTCCT
GTCGATACTCGTCTGCTCCTCCGTCTGCTGCTGCCGCTGCTTCCGCTGCC
GCCCCAAACGTAACGCAGCCCTCTACGGCTTCGGCGACGAGGAGCTGGTG
CCGACCCCGGAGGAACAAGAGGTGCGTATACGTATACGTCCGCCGTTTCT
GGCGTAAAGCGTCTTTTTTGTGTCATTTTATTGTTTCGCAGTAGAAAGAC
CACCCTCGTTCTGTGAGTTTATGTGCACGACTATTCAATAATCAGATTAG
ATATATTTTGGTGAATGATTTGATGTTTAGGTTTTTAGTGTTGGTGACCG
ACTAGTGCTTCTGTTCGCCCTCCCACAGCTATTAAATGAAACAGAGGGTA
GAAATTTTGTTTGCTGTTGCGTCGGTGGCGAATATTCCACCAGGCCTGCC
GCCTCGCATCGTCAGCCACAAACTTTTCGTGCATGTATGCACCATTTGGC
ATCAACAGAATCCTTGGTTGAAACCATCGTTTTTGGAAGAGAGCACTCGG
GCGCTGCTGGAAAAGAAAAGCTGCCCTACCCAGTGGTGTCCCGCCGTCGT
TGACGTCCGTCTTCGAATACTCGATTTTTTAATACTCGTTTGTTTGGTCT
AGATCATTGTGTAGCGGTGCATGTTTCGTTAGTATGCAAGCCCCCCCGCA
CCCGCCGTGCCCCTCCTTCTGGCTCACAAGCTGTCGAGACTACACGGGCT
TAAAACAAGACCTTTGGCTCGAACAGAAGTTTTGGCACGAGCAATCATTC
CAGCCATCGTCTCGTGTATGTCCCTCGTGCCACAGACAGATAGAAATCAA
GGACACCCCCCCCCCCCGTCCTTACCTTGCCTTGCCTTCCCTTCCCCTCC
GCACAGGGCCTCACGGCTCTCAAGTCCTTCCTGTCCCGCGTCAGCCACGA
CCTCAGCAACCCCAAACCCGCCGCCAACACCGGCAACAACAACGGCGACG
GGTCGAGAGAGACGTCACCGGCACACAGCCCGGAAAGATCGTCGTCTACC
GGTGAGAGCATGTTCGTGCGCACACACGCTGTGATGGTGTTGATGGAGCC
TCTTCTCCTTGAGATTTCTTCAGAAGAAGGACAGCAGTACTGTTGTCTAA
CTCCTTCACCACCCCTGTCGGCAGGACCCTCTGATTAGAACGCGCTATAA
TAAGAGGCTTGCAGAAGAAGGGGAGCGGATGGCCGTCGGTGATCGGTCCT
GTGGGAACAATGCCCCGTCCTCTCGAGGTCAATGGTGTAACCGCTACGGC
ATGCAACACGTAGCAGTACCCCGCCCCCCCCCCTCCCTCCCTACTTCGCG
CAGGTGGGAAAGACGGCAACGCCAGCAGCAGCAGGACTCCCACCACCGGC
GACGGCGACGAAAGGCGGCGGCGGAGCAGCAGCGGTGCCACCAGGTCAGC
CGCGCGAAGACGAGGCCGCTCGGCTGCCGCGCCGTCTCCCACCGCCACCG
CCACCGCCGCTAACAGCGAAGCGGAGGGGATGGAAAGAGAGGCGGCGGTA
TCAACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:545362..548467-

>mRNA_E-siliculosus-1a_M_contig89.16902.1 ID=mRNA_E-siliculosus-1a_M_contig89.16902.1|Name=mRNA_E-siliculosus-1a_M_contig89.16902.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:545362..548467- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTGGTGGGGAAGAGCTCGAAGCAGAGGAACAGAGGGTGGTGGGGAAGAG
CTCGAAGCAGAGGAACAGAGGTACGGGTCGGGGTGGGTGGTGACCCAGGC
CTCCCTGAACGGGGTGGCGAGGTACGCCGGGCACGCGCTGCAGATCATGG
CCCTCGTGCGGCCGGCGGCTCCTTCGGCCTTCGAGGGGCTGAGGCAGCTG
GTGGACTTGTACCTGTACTGCGCCCTCACGCTCTTCTGCCCGCAGTGGGC
GATCGACGGTACGGGTCGGGGTGGGTGGTGACCCAGGCCTCCCTGAACGG
GGTGGCGAGGTACGCCGGGCACGCGCTGCAGATCATGGCCCTCGTGCGGC
CGGCGGCTCCTTCGGCCTTCGAGGGGCTGAGGCAGCTGGTGGACTTGTAC
CTGTACTGCGCCCTCACGCTCTTCTGCCCGCAGTGGGCGATCGACGCCCT
CTACGGCTTCGGCGACGAGGAGCTGGTGCCGACCCCGGAGGAACAAGAGC
CCTCTACGGCTTCGGCGACGAGGAGCTGGTGCCGACCCCGGAGGAACAAG
AGGGCCTCACGGCTCTCAAGTCCTTCCTGTCCCGCGTCAGCCACGACCTC
AGCAACCCCAAACCCGCCGCCAACACCGGCAACAACAACGGCGACGGGTC
GAGAGAGACGTCACCGGCACACAGCCCGGAAAGATCGTCGTCTACCGGGC
CTCACGGCTCTCAAGTCCTTCCTGTCCCGCGTCAGCCACGACCTCAGCAA
CCCCAAACCCGCCGCCAACACCGGCAACAACAACGGCGACGGGTCGAGAG
AGACGTCACCGGCACACAGCCCGGAAAGATCGTCGTCTACCGGTGGGAAA
GACGGCAACGCCAGCAGCAGCAGGACTCCCACCACCGGCGACGGCGACGA
AAGGCGGCGGCGGAGCAGCAGCGGTGCCACCAGGTCAGCCGCGCGAAGAC
GAGGCCGCTCGGCTGCCGCGCCGTCTCCCACCGCCACCGCCACCGCCGCT
AACAGCGAAGCGGAGGGGATGGAAAGAGAGGCGGCGGTATCAACGGTGGG
AAAGACGGCAACGCCAGCAGCAGCAGGACTCCCACCACCGGCGACGGCGA
CGAAAGGCGGCGGCGGAGCAGCAGCGGTGCCACCAGGTCAGCCGCGCGAA
GACGAGGCCGCTCGGCTGCCGCGCCGTCTCCCACCGCCACCGCCACCGCC
GCTAACAGCGAAGCGGAGGGGATGGAAAGAGAGGCGGCGGTATCAACG
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