mRNA_E-siliculosus-1a_M_contig89.16877.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16877.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16877.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16877.1 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 2.040e-131
Identity = 202/210 (96.19%), Postives = 205/210 (97.62%), Query Frame = 1 
Query:   91 MQATCIALLCAVVAMITCVEGFSTRPSLHTHRATTTASRSFQASRAGGRRSSQTRMFFDFGKKTESNARPMAGGTVKGGKKTKITQEVTPAQRRAQDKATAIRERSRKAA-RKSEGVFTPPQQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 717
            MQATCIALLCAVVAMITCVEGFSTRPSLHTHRA TTASRS QASRAG RRSSQTRMFFDFGKKTESNARPMAGGTVKGGKKTKITQ+VTPAQRRAQ+KATAIRERSRKA+ RKSEGVFTPP QFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK
Sbjct:    1 MQATCIALLCAVVAMITCVEGFSTRPSLHTHRAATTASRSLQASRAGSRRSSQTRMFFDFGKKTESNARPMAGGTVKGGKKTKITQDVTPAQRRAQEKATAIRERSRKASTRKSEGVFTPP-QFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16877.1 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.680e-33
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 1 
Query:  250 TRMFFDFGKKTESNA---RPMAGGTVKGGKKTKITQEVT---PA-QRRAQDKATAIRERSRKAARKSEGVFTPPQQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 717
            T+M F  G    ++A   RP AG T KG KKT +  + +   PA +RR + +A A ++ + KAA    GVF+P +Q+E F  AR  VPSG  + YW++IA +VPGQNA  CK++A  +LFE A GTK N+FGGY+ETIE  DYVD +AD+M K+  +F  GKK
Sbjct:   44 TQMVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAA--EAGVFSP-EQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16877.1 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.490e-30
Identity = 69/139 (49.64%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:  286 SNARPMAGGTVKGGKKTKITQEVT---PA-QRRAQDKATAIRERSRKAARKSEGVFTPPQQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKI 690
            +++RP AG T KG KKT +  + +   PA +RR + +A A ++ + KAA    GVF+P +Q+E F  AR  VPSG  + YW++IA +VPGQNA  CK++A  +LFE A GTK N+FGGY+ETIE  DYVD +AD+M K+
Sbjct:   14 ASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAA--EAGVFSP-EQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 148
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16877.1 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 4.820e-11
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  436 VFTPPQQFEAFKKARKEVPSGKGDAYWEKIAARV-PGQNAAACKRVAESMLFEAAVGTKSNYFGGYI----ETIETPDYVDPEADIMFKINKLFG 705
            VFT  +Q   F +ARKE+PSG GDAYW+K+A RV  G  A  CKR+A++ LF+ A GT SN+F  ++    E +E+    +  AD M ++   +G
Sbjct:   91 VFTD-KQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVESGYVDETAADPMTQMKNFWG 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSK3_ECTSI2.040e-13196.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZY5_9STRA7.680e-3347.85Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YSA5_9STRA8.490e-3049.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2X777_9EUKA4.820e-1143.16Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:222442..225553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size720
Model size722
Exons4
Ec32 orthologEc-09_001950.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D5NM@1,2SZ3Q@2759
Seed eggNOG ortholog2880.D8LSK3
Seed ortholog evalue5.6e-103
Seed ortholog score380.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16877.1prot_E-siliculosus-1a_M_contig89.16877.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 222442..225553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936360.727784-CDS-E-siliculosus-1a_M_contig89:222441..2225921622936360.727784-CDS-E-siliculosus-1a_M_contig89:222441..222592Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 222442..222592 +
1696251042.7363436-CDS-E-siliculosus-1a_M_contig89:222441..2225921696251042.7363436-CDS-E-siliculosus-1a_M_contig89:222441..222592Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 222442..222592 +
1622936360.7436757-CDS-E-siliculosus-1a_M_contig89:223843..2240251622936360.7436757-CDS-E-siliculosus-1a_M_contig89:223843..224025Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 223844..224025 +
1696251042.7505863-CDS-E-siliculosus-1a_M_contig89:223843..2240251696251042.7505863-CDS-E-siliculosus-1a_M_contig89:223843..224025Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 223844..224025 +
1622936360.7582214-CDS-E-siliculosus-1a_M_contig89:224748..2248681622936360.7582214-CDS-E-siliculosus-1a_M_contig89:224748..224868Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 224749..224868 +
1696251042.7619405-CDS-E-siliculosus-1a_M_contig89:224748..2248681696251042.7619405-CDS-E-siliculosus-1a_M_contig89:224748..224868Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 224749..224868 +
1622936360.7755153-CDS-E-siliculosus-1a_M_contig89:225286..2255531622936360.7755153-CDS-E-siliculosus-1a_M_contig89:225286..225553Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 225287..225553 +
1696251042.7733614-CDS-E-siliculosus-1a_M_contig89:225286..2255531696251042.7733614-CDS-E-siliculosus-1a_M_contig89:225286..225553Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 225287..225553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16877.1

>prot_E-siliculosus-1a_M_contig89.16877.1 ID=prot_E-siliculosus-1a_M_contig89.16877.1|Name=mRNA_E-siliculosus-1a_M_contig89.16877.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=240bp
RVSGQPPSQLTLCATLHLFSALFSFKNWTTMQATCIALLCAVVAMITCVE
GFSTRPSLHTHRATTTASRSFQASRAGGRRSSQTRMFFDFGKKTESNARP
MAGGTVKGGKKTKITQEVTPAQRRAQDKATAIRERSRKAARKSEGVFTPP
QQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAV
GTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK*
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mRNA from alignment at E-siliculosus-1a_M_contig89:222442..225553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16877.1 ID=mRNA_E-siliculosus-1a_M_contig89.16877.1|Name=mRNA_E-siliculosus-1a_M_contig89.16877.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3112bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:222442..225553+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGAGTGTCAGGCCAACCCCCATCACAACTCACTCTGTGTGCCACACTACA
TCTCTTCTCCGCTCTCTTCTCATTCAAAAACTGGACGACAATGCAAGCTA
CCTGTATCGCCCTGTTATGTGCTGTCGTGGCGATGATCACGTGTGTCGAA
GGTAAGCGAACTATGTCGACCAGTATCACCAACGGACGTACAGCACAGCT
GCGGAGCACTTCATGTCGAAGTTGTAAGAGCTGTCGTTGTGCGACCAGCA
TGCGCTGTACACCTGGGGTTCGTCTCGGCCAACCGCTATAGAATCAAGCT
GGCATTGACGCGCTAATGCCAGACCAGAACCCTTGCGCCAAGTTGGGGCA
CCTAGCCGACGATGGCGTGTGTTGGATGTGTGATGGGTAGACTACTGCTG
TAGACGATGCGGTCGCTCTACACACGTCCCGGAGAATATGGCATCTGTCC
TTAACATGTTTCTTCCATGCCTCACTGCCCCAAGACTCATTGGTACTCAG
TTAGACTATAAAGGTACCTCCACTGGGTGGAAACCCCATCGGGGCTCGCT
CGTCTTGTTTTGCTCAGTCAACCCCTAACCTGGCGTCACAAGCAGCTCAA
GAGCAAACCGAACTCTGACCGAACTCCGCATAATCCGGCCAGCAATGTCC
CATGGTGCATGTAGTTACTGCGCCTGTCTCACGCCTGAGTGTAGTATTAC
CACATCACCACCAAGTTTCGTCCAGCGTGGGATTTTCGCTGACATGTTTT
GCTTCCGAGGTTTGAAACACTTCTGGCTACGCACGAGGCGTCAGTGGTGC
ACCCCACTTGAGGTGTCCTCCCTGGACTATGATATACCACACGTCGCAAG
TGTGCAGTCGCGTTGACTACGTAGTCTACACAGCCAGTCTACAACAACAG
TACAGCACAAAGTACGTTCATGTGCATTCTCACGTAAGACTGCGTATACT
ATGTAAAATTTGCTTTCGGTTCGATGAAGGGTCGCTTGGCTCTTTGAGCC
CAAGGGCCCGTCCTGCTACCTGCATAAATCGTCATCTTGCATCCTGCCTT
TGACGACACGGCTGTGTTCTCACGAGCCCACTATGTAAAATTTGCTTTCG
GTTCGATGAAGGGTCGCTTGGCTCTTTGAGCCCAAGGGCCCGTCCTGCTA
CCTGCATAAATCGTCATCTTGCATCCTGCCTTTGACGACACGGCTGTGTT
CTCACGAGCCCACTCTGGAGGGATCACTTCCTTTTCTTGCCGATACTTGA
CGATTTCCGCATTATTTCAGATGCATTTGACGTGTTTATCTCAATGGTCT
TGATGCACTCCACTTCTGCTACGAACAGCTGCCGTTGCTTTGAAAGCAGA
TGTTCTCGTTCACGCATGAACTCGTCGACCCCGATAATTTGTTTGTCATC
AGGGTTTAGCACGCGACCAAGCCTACACACCCACCGAGCGACAACCACAG
CGTCAAGATCTTTTCAAGCGTCGCGAGCTGGCGGTCGCCGAAGCTCACAA
ACAAGAATGTTCTTCGACTTCGGGAAGAAGACAGAGTCGAACGCTAGACC
AATGGCTGGGGGGACTGTCAAGGGGGGGAAGAAGGTGAGATGAAGCATTT
CAGATTTAAGACTATGTGGAAGTTACGTTTGCTTTACGAATGCATCTGGA
ACGAATCTTTTTGTCTGTGAACCTGTCAAGTATCCATGCGGTGCTCGGTA
GCTGATTCAACTAGCATCACAGCTGCGGTACAATCATCCGTCGCCTTTTT
GGCGACCCCACGGCCAAATATCGAGTGTGGCCTTCGTCGGTTCACCACCA
TTCTGCCAGATTTGTTTTTCAGAGAAGATAATACATTTTCGCGTCTTGCC
TTGCCTGCTTGGGGGTGTTAACAGTTGTGGCCTAGAACTCCCCAGTCGGA
CCTGTGTGTAGACACATTCCGCCAACAGTTCTCAGCCGTGGCTAGCCACG
GCGTCGTGCTCGGGCACGAGACAACACTCGAATCGGCCGTTTCACCCCTT
CGTCCTCGGTCTTATGGCACAAATATCTACACTTGTTTTTGTGTTTTTTT
TTGCCTCCTTCGTGAGCACCCGGGTGTCCAAGTACGCTTGAGTTTGGAAA
TAAACGTTACACCGGCTTGTCCGTCATATGACCGAGTCACCACGCGAAAA
ACCATATCGTTGTTTGTGAACACTAACCCCCACCAGGCAATCTTGGGTCT
TTTTCTGCTGTTGTCTCAGACCCTGCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCCTTGGTCACACACGTTCGCTGTTTTGCTTATTTTCGC
CTTCTAGACCAAAATTACTCAGGAGGTTACACCCGCTCAGCGGCGGGCAC
AGGATAAGGCGACGGCGATACGGGAGAGGAGTCGGAAGGCAGCAAGAAAA
AGCGAAGGCGTCTTCACTCCACCACAGGTTAGTGGAAACGTCGCACATGT
CGAGGACTCCAACACTAGCGCACAAAGTATCACGGCATCTAGATTTCAGA
GCAATGCTACGGAAGAGGGGGCACGGTTTGAGGCAAGGGGTACGTCTTGT
CGCGTGATGTTCAAAACTGCCCGTAACTCTCTGAAGTTTTGCATTTCAAG
AAAAACAATTTCTGGACGGGCGGCAGCCTAGCGTGTATGTGGCAGTGTGC
AAAGCAATTAGCATTTTTCCAATTGCTGAGAGAAGACAGACTACCTCGCA
AATTAACCTGCATGTACTCGATGGTGTACCCCCTATCGCAGCATGTGGTG
ATCATCCCATGCCCCCACACCAGCCCCCACCTCGTCTTCATTGTTCTTTA
GCGCCAACTCTTACTTACCAACCGCGTAAAAAAACGAAAATCGAGCAGTT
CGAGGCCTTCAAGAAGGCGCGGAAAGAAGTGCCCTCCGGCAAGGGGGACG
CCTACTGGGAGAAGATAGCGGCGAGGGTGCCGGGCCAGAACGCCGCGGCC
TGCAAGCGCGTGGCGGAGTCGATGCTGTTCGAGGCCGCGGTGGGCACCAA
GAGCAACTACTTCGGCGGCTACATCGAGACAATAGAGACGCCGGACTACG
TTGACCCCGAGGCGGACATCATGTTCAAGATCAACAAGTTGTTCGGCCGC
GGGAAGAAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:222442..225553+

>mRNA_E-siliculosus-1a_M_contig89.16877.1 ID=mRNA_E-siliculosus-1a_M_contig89.16877.1|Name=mRNA_E-siliculosus-1a_M_contig89.16877.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1440bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:222442..225553+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGAGTGTCAGGCCAACCCCCATCACAACTCACTCTGTGTGCCACACTACA
TCTCTTCTCCGCTCTCTTCTCATTCAAAAACTGGACGACAATGCAAGCTA
CCTGTATCGCCCTGTTATGTGCTGTCGTGGCGATGATCACGTGTGTCGAA
GAGAGTGTCAGGCCAACCCCCATCACAACTCACTCTGTGTGCCACACTAC
ATCTCTTCTCCGCTCTCTTCTCATTCAAAAACTGGACGACAATGCAAGCT
ACCTGTATCGCCCTGTTATGTGCTGTCGTGGCGATGATCACGTGTGTCGA
AGGGTTTAGCACGCGACCAAGCCTACACACCCACCGAGCGACAACCACAG
CGTCAAGATCTTTTCAAGCGTCGCGAGCTGGCGGTCGCCGAAGCTCACAA
ACAAGAATGTTCTTCGACTTCGGGAAGAAGACAGAGTCGAACGCTAGACC
AATGGCTGGGGGGACTGTCAAGGGGGGGAAGAAGGGTTTAGCACGCGACC
AAGCCTACACACCCACCGAGCGACAACCACAGCGTCAAGATCTTTTCAAG
CGTCGCGAGCTGGCGGTCGCCGAAGCTCACAAACAAGAATGTTCTTCGAC
TTCGGGAAGAAGACAGAGTCGAACGCTAGACCAATGGCTGGGGGGACTGT
CAAGGGGGGGAAGAAGACCAAAATTACTCAGGAGGTTACACCCGCTCAGC
GGCGGGCACAGGATAAGGCGACGGCGATACGGGAGAGGAGTCGGAAGGCA
GCAAGAAAAAGCGAAGGCGTCTTCACTCCACCACAGACCAAAATTACTCA
GGAGGTTACACCCGCTCAGCGGCGGGCACAGGATAAGGCGACGGCGATAC
GGGAGAGGAGTCGGAAGGCAGCAAGAAAAAGCGAAGGCGTCTTCACTCCA
CCACAGCAGTTCGAGGCCTTCAAGAAGGCGCGGAAAGAAGTGCCCTCCGG
CAAGGGGGACGCCTACTGGGAGAAGATAGCGGCGAGGGTGCCGGGCCAGA
ACGCCGCGGCCTGCAAGCGCGTGGCGGAGTCGATGCTGTTCGAGGCCGCG
GTGGGCACCAAGAGCAACTACTTCGGCGGCTACATCGAGACAATAGAGAC
GCCGGACTACGTTGACCCCGAGGCGGACATCATGTTCAAGATCAACAAGT
TGTTCGGCCGCGGGAAGAAATAGCAGTTCGAGGCCTTCAAGAAGGCGCGG
AAAGAAGTGCCCTCCGGCAAGGGGGACGCCTACTGGGAGAAGATAGCGGC
GAGGGTGCCGGGCCAGAACGCCGCGGCCTGCAAGCGCGTGGCGGAGTCGA
TGCTGTTCGAGGCCGCGGTGGGCACCAAGAGCAACTACTTCGGCGGCTAC
ATCGAGACAATAGAGACGCCGGACTACGTTGACCCCGAGGCGGACATCAT
GTTCAAGATCAACAAGTTGTTCGGCCGCGGGAAGAAATAG
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