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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16843.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE) HSP 1 Score: 330 bits (845), Expect = 4.300e-111 Identity = 199/230 (86.52%), Postives = 208/230 (90.43%), Query Frame = 1
Query: 4 MLGAPLIGGG-----GSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDNKDDEMEVVGARGGGEGPGHRYGLVSSSEGQRLVAAVKNLTDDNDALLCRQQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLIVRALPRVGFLVVVYRRPHLPQKVVGEVERFVDDFWAGTQGRAVRSPLP 678
MLGAPL GG GSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXX +DNK+D EVVGARGGGEGPG R GLVSSSEGQRLVAAVK+LTDD+DA+ CR+QEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGL+VRALPRVGFLVVVYRRPHLPQ+VVGEVE+FVDDFWAGTQGRAVRSPLP
Sbjct: 65 MLGAPLTSGGXXXXAGSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXX----------EDNKNDGKEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAI-CRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLP 283
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 732 |
| Model size | 735 |
| Exons | 3 |
| Ec32 ortholog | Ec-16_002620.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936352.3025048-UTR-E-siliculosus-1a_M_contig88:567866..567869 | 1622936352.3025048-UTR-E-siliculosus-1a_M_contig88:567866..567869 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig88 567867..567869 + |
| 1696251038.9000509-UTR-E-siliculosus-1a_M_contig88:567866..567869 | 1696251038.9000509-UTR-E-siliculosus-1a_M_contig88:567866..567869 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig88 567867..567869 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936352.3170955-CDS-E-siliculosus-1a_M_contig88:567869..568241 | 1622936352.3170955-CDS-E-siliculosus-1a_M_contig88:567869..568241 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 567870..568241 + |
| 1696251038.9105842-CDS-E-siliculosus-1a_M_contig88:567869..568241 | 1696251038.9105842-CDS-E-siliculosus-1a_M_contig88:567869..568241 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 567870..568241 + |
| 1622936352.3295634-CDS-E-siliculosus-1a_M_contig88:573017..573220 | 1622936352.3295634-CDS-E-siliculosus-1a_M_contig88:573017..573220 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 573018..573220 + |
| 1696251038.92644-CDS-E-siliculosus-1a_M_contig88:573017..573220 | 1696251038.92644-CDS-E-siliculosus-1a_M_contig88:573017..573220 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 573018..573220 + |
| 1622936352.3447006-CDS-E-siliculosus-1a_M_contig88:573928..574085 | 1622936352.3447006-CDS-E-siliculosus-1a_M_contig88:573928..574085 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 573929..574085 + |
| 1696251038.9393334-CDS-E-siliculosus-1a_M_contig88:573928..574085 | 1696251038.9393334-CDS-E-siliculosus-1a_M_contig88:573928..574085 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig88 573929..574085 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16843.1 >prot_E-siliculosus-1a_M_contig88.16843.1 ID=prot_E-siliculosus-1a_M_contig88.16843.1|Name=mRNA_E-siliculosus-1a_M_contig88.16843.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=244bp
MLGAPLIGGGGSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLD DRLPRPPPAAGAAAAATATAAAAAAATAAGAATATAAARKDNKDDEMEVV GARGGGEGPGHRYGLVSSSEGQRLVAAVKNLTDDNDALLCRQQEEQPLTC MGVPFRVFGGTPLGIYAVGPGRRVGLIVRALPRVGFLVVVYRRPHLPQKV VGEVERFVDDFWAGTQGRAVRSPLPPPPPPPPPPPPRSSSTRR* back to topmRNA from alignment at E-siliculosus-1a_M_contig88:567867..574085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig88.16843.1 ID=mRNA_E-siliculosus-1a_M_contig88.16843.1|Name=mRNA_E-siliculosus-1a_M_contig88.16843.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6219bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:567867..574085+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) CAGATGCTTGGAGCCCCTCTGATCGGCGGCGGCGGGAGCGGCAGTGCGTC
TTACGATGCGCTGTTCCAGGGACTTGTCGGCAGCGGCTGCATCGCGGGGC
TGGCCCTGCTGGATGCCTCGCGAGGACGGCCGCTGTACGAGAACCGACTT
GACGACCGCTTGCCCCGCCCTCCTCCCGCCGCCGGCGCAGCAGCAGCTGC
AACAGCAACAGCAGCAGCAGCTGCAGCAGCAACAGCAGCTGGAGCAGCAA
CAGCAACAGCAGCAGCAAGGAAGGATAACAAGGATGACGAGATGGAAGTA
GTAGGCGCAAGAGGTGGAGGAGAAGGGCCCGGCCACCGCTACGGGTTGGT
GTCTTCTTCCGAAGGACAGCGGCTGGTAAGCAAGCAAGGCGCGTCCAGTC
ATTCACTGCCTCCCTGCTGTTTGGCACCCTTCTCTACCTCGAGGCGTGGC
CGCCCTTTCGATGGTGACCCTCGGTAGTGGGGAGTAGTACACCGACAGAT
TGCTTGAATCAATTGAAACTGAGATATGTCTGTCTATTGGCCACCGCACG
AGATGCTTCACCATCATCGCCACAACGGAAGCCTACCCCCCCCCGCCCAC
CTCTGGCAAAGCAGGAAGGAACCATTTGCCGTCGGTGATAATCGGTCCTC
CTGTGGGAACAACGGTCTAACAGCTAATAAGGCATGACGCGTGGTCAATG
GTCTGATAGCCAAACCAAGCAAAACATGAGTACCCCCCCCCCGCCCGTGG
GTTGGTTACCATGCAGATCGCCTGGCACAAACTTGGGGTACTTGTGCTAA
GGGTGTTGAACTTGGCTCCAGGCTATGAGCCCGTGTTGGAGGCACTTTTT
AGTGTCGGTGAGCCGGCAAAAGAATTGGAAGACACCAGACCCTCAACAAG
TACTAGGATTGGGAAGTCCCAGTAATTTGAAAGCATCCCACTTCAAACAA
AATCAAGGAGATAGTCTCGAAAGAGATAGGGAGGGAGACGACGAGGCACA
AAGGGTGGAGAAGGAGAGAATGGAAAGGTGCAGTACTGGTAGTGTTGATA
TTTGGGGTCAATAGCGACATGACAAGGTTGGAGTTCAAAAGTAGATGTGA
AGAAAGTAGGATTATTTGCTTCGCACGGGGGGGGGTAGAAAGGGAAGGAA
ATCATTTTAGAATCACGTTTGGAAGGAGAGTAAGCGCAGAATGGGAAAGA
CTAGAAGTAGAGAAGATGTCGGCGTGGGTGAGGAGACTAGGTTGGAGGGT
GTGCATAGCAAATAGGATCCAGGAAGTAAGGCGTAGCCCAAGGTTGGCTG
AAAACAAAGGGGGGCAGGAGGTTCGAAAGGGTCAAAAGGGAAAGCAAGCC
AAAGTAGGGGAAGGGGGGGGCAGCGATAGGAAAAGGCAGAAGGGAAGGCA
AATGAGGGACAGAAGGAAGCCTGAAAGGCACGGGAAAGTAGAAAGTAGGA
GTAAGGAAATCAGAATAGGGTCTTGGAATGTATGCGGGTTTGCCACAGAT
GAGCGTAAAAGACTCGAAATTGCAGAGCAAGCAGCCGAAAAAGACCTGGA
CATAGTTGGAGTCCAAGAGTCGTGGGAGAAGGACGGGGGAGAAATAGGAA
AAGAAGTGGGAAGCTACACATGGATAGGTAAAATGAGGAGAGGACAGAAA
ATCAAGAGTAGAGGGGAGGGGGAGTTGGATTCTTAGTCAAGGAGCACATG
TGCGACGTAATTGAGGTGATCAGCGACACCAAATTCAACGAAAGCATGTG
GATAAGGGTACCAGGGGAACGGGGAAGGAAGGACTTGTTCGTAGGAAATG
TATATATACCACCAGAGTCGAAGAATATGGTGAAGGACATCAGGATAGGG
TTCGAGGAGGTAGCAGCGGATGTACAAAACTTCAAGAGAAAGGGAGAAGT
AGTTCTAGTTGGGGACTTCAATTCACGAATCGGGCGAACCACGAACCCAC
ACGGAGCCATAGGGCAATACGGGGAGGGAGCCACGAACAAAAACGGGGAA
GAAATGCTGAGGTTCCTTGACAGTAGCGAGATGAAGGTGTTGAACGGTAG
AGCACGAAAGACAGAACCGGAATGGACTAGGCAGTGTTTCAAAAAAGGAG
AACGCTCCATCCTTGACTACATAGTCGAAGAGAATGGGGGGAAAGAGACG
GAAGTACGAGTATGCACAACGGATGTAGGCACTACAGACCATGCGTTGGT
GTGGACAGCCCTACAACAGACGAGAGTCATACAGAGTAGACGACGCAGGA
AAATGTACAGGTGGAGAATAGATAAACTAGAAGTAGAAGAAACGAGGGTA
GAGTTCCAAGAAGGCTGTAAACGACAAGAAACTCTCGGAGTTGATAGAGG
CAAGGCTGTAAACGACAAGAAACTCTCGGAGTTGATAGAGGCAATGGGCA
CACCGAAGGATGCCGAAGGTCGGGACCAGGCCGGGTCTAGAATCATAGAA
GGGTGGGAAGAGCTGGTAAACACAACAGCAAGTAGAGTTCTGGGTAGAAA
GTTGATAGTTTGTAAGAGAGCAGTGAAGTGGTGGGACGAAGAAATCAAGC
AAGCAATTCGAGTACGTAGAGAGTCACACGCAAAATATGCGGCAGGGAAA
ACCGATGCAGGATGGAAGGAGTATGTTGAAAGTAGAAAGAGGGTGAAGGA
GTTGGTCGTGAAGAAGAAGAAAGGGCTGTGGGAGGAAGTAGTCCAAAAGA
CTAACAAAGATTTTGAGGGGGGGATGAAGCAAATGTGGGTAGGAATTCAA
GGGATAGTGGGCAAGAAAAGAGGGGGAGACACGGGAATAGCGACACTAAG
ATCTGCCGAGGGTAAGATGGTAAGCAGTTCTAAAGGAAAGCGGGAAGTAC
TAGTAGAGCACTACCGCAAACTTGGGACACCCACCACCAACGACAACTTC
GACTCGGAGTTTGAGAAGGAAATCAACTTGTGGGCAGAGGAAAACGTTGA
AAGATCTCGGAGGGAATGTAGTGATGTAGACGGGTTGCAGGGAGAGTTCA
CACGAGAAGAGGTAGAGGACTGCGTAGCGAAACTCAAGAATAGAAAAGCG
GCAGGGGCTGATGGAATTGTGAATGAGCTTTTGAAACAGGGGGGGGAGGG
GATGATTAACATGTTGGTCCGGATATTCAACTGGATATGGAAACACGAGT
ACGCGCCGAAGAGATGGAGAGAAGGAGTAGTCGTGAACCTGTTCAAAAAG
GGGGATAAAACTGACCCGGGGAATTATAGAGGGATAACCCTGCTGAGCAC
AGTGGAGAAACTGTTTGGCAAGATGATAGACAATAGAATGGGAGACATGT
TGGAGGGGAAACAAAAGATCAGCGAAGGACAAGCTGGATTTAGACCAGAT
CGTAGTTGTGTAGACCATGTATATACGTTGAGTAAAATTATCCAAGGTAG
GAAAGACGCCGGGCGTACGACATACTGTTTCTTCCTAGATGTACAAAAAG
CCTACGACACCGTATGGCGCAATGGATTGTGGAAAAAGATGTGGGACATC
GGGATCCGGGGGAAAATGTGGAGGATGTTGAAAAAGATGACAGAGTGCAC
AAGAAGTGCGGTGATGTTGGATGGGGAAATTTCGAAGTACTTGGATATAC
TCCAAGGAGTCGCACAGGGCTGTACGATGTCACCCACTCTTTTTAAGATT
TACATCAACGATTTGATAAGGGCGGTTGAAGCAGTAGGACAGGGAGTCCA
AGTAGGGGGAAAGAGTGTGTCCGGACTGATGTTTGCAGATGATTTCGTGG
GGGTATCCGAAACACCAGAAGGGTTGCAAGAACAAAAAGATGCGGCGGTA
GGATACACCCGAAAATGGAGACTGTCGGCGAACGTAGGAAAATGCGCAGT
AGTGGTCTGTAACGAAGACAAGAAAAATCCCGTAGAATTCAAATGGAAAT
GGGGGGAGGAAGAACTACCGGTAGTAGACAAGTATACGTACCTGGGAGTA
GAGATTTCCAAGGAGTGCTCATGGGACGCACACATAGCAAAGTTGATTGG
GAAGGGTAAAGCTCAGATAGGCAAGATGGACGAGATCCTTACGGACCCAC
ACCTAGACACTAGGATTAAGAGGTGTATTCTCTTGAATGTGATTGTACCT
AAGCTAGAGTATGCAGGAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAA
GCAACTGGAAACGGTGCAGATGGCAGCGGCCAAGAAAATACTAGGATGTT
CAAGTACAACGAGCAACACTGTATTGAGAGCAGAATTGGGAATGTACTCT
CTTAAAACAAAGAGAGACATGCAGAAGTTGAATTGGCAGTACAAGATAAG
TAGAATGTCGGACGATAGACTACCAGCCATGGTTGACAAGGCAGCTTGGG
GAAAAGCGACTCCAGGTAAGAAGGGAATCAGATGGGACAAGGTGGTAGAG
AAGGTTTGGAAGGAGATAGGAGACGAGGAGGAGACGTTGGACACGGAAGG
GTTCAGGGGGTTCAAGACGACAGTCAAGGAGATGCTAGAAAGTAGGGAGG
AGGCAACCCTTCGGAAGAAGGTACGAAGCGAAGACCACTTGGAGATATAC
GGGAAGTTGAAAGAAGGGATAGGGATGAAGGCGTACGTACTTGGACGGCC
CATGGACTACGCGAAAAAGCTGAAATTGCAATTTCGAGTAGGCGATCTGG
ACTTGCCAGAACGGAGGAAGAGGTATACCAGCCGTAGGAGAGAGGAAGAG
GAGGATAGACACACATGTCCTTGTGGCAAATCGGAGGAGAGTAAACCCCA
CATCGTTGGGGAGTGTGAGTTGTACAGGAAGGAAAGAGAGGATCTCGAGG
AGGACATGAGACAGAGAGGGTGTGACATGGACAAGTTTGGTAAATTAGAC
AACAGCGAAAAAACGATCGCGATCATTGGGGATAGATGGTGGGCACAAGA
GGCCCTAGAGGACGGGGATAAGATGTGCAAGAAATTTTTATGTAGTTTGT
GGCAGAAACGTAAAGAGCTCCCAAATGTTGGTGGTGTCTCTAGTAGGGGT
AGGAACGGTGCTCCGTCTCGAAAGGGACGCGTGGTCAATGGTCAAATGAC
GACGGCAAGCAACAAATGAGTACGCCCCCCCGCCCCACGCCACCACCACC
TCCCTGCCACCGCTGCTTTAATCCTCGTTGACCCGACCTTTGACGCACAA
GGTGGCGGCCGTGAAAAACTTGACGGATGATAATGACGCCCTCCTCTGCC
GCCAGCAAGAAGAGCAGCCCCTGACGTGCATGGGGGTACCGTTCCGGGTA
TTCGGCGGGACCCCCCTCGGCATCTACGCGGTCGGTCCCGGCAGGAGGGT
CGGGTTGATCGTGCGAGCCCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCT
ACCGGTAGGTCTACGGCGGGCGGTGTTTTTTTTTTTTTGTATTACATATT
TACAGAAAGCGCCCGCACAATAGAACTTGACAATTGATACTCCGGAGTAT
ATATAGCCTATGAACTCTCCAAATCTAAGAACTTGAGCACCATTCGTTTG
CGAGCTCGGTTAAGAACCCCTACACTAACATCTATATAACGGCCATTCGT
AGCACGACCCTAGGAATACGGTAAGAACCCCAGCCTCGACGAAAAGTACA
AAAGAGGTTCTTAAGTGGGGGCCCGTTCTGTGCTGCTGTGGTACATGTGT
ACGGAATAAACGGCGGCTCGTTTGCATGACATGTGCAGATTGGTTTGTTG
TCGGATCTCTGTTCATCGAGGCATCTGTGTCTGGGGTACACTGACATTCA
CGCCGCGTTCCATCCACGCGTCATTAACCCCCCCAACGGAACAGTCAGGA
GAAGATGGTAGCCATGCAGGGGTATACGAAGTGGCCTAAGCAGGCGAGAG
GTGATATGGACAGGATCGGGAAAAAATGCTTCTAAATTTGGGCTACCTTT
GGCAAAGTAGGAAGGGCCATCGGTGATCGGTCCTGCGGGAAGAAACCCTC
CGTCCTCTCGAGGACGCGTGATCAGTGGTCTAGTAGCACGCCCCCCTCCC
CCCCTGACCCTCTTCGTATTCCGTCCAACGCGTTTTCGTGCATGCGTGCG
TTGCCGAGACAGGCGGCCTCATCTGCCTCAGAAGGTGGTCGGGGAAGTAG
AGAGGTTCGTGGACGACTTCTGGGCAGGCACCCAAGGCCGCGCGGTTAGG
TCGCCACTACCACCACCACCACCACCACCACCACCACCACCACCCCGATC
ATCGTCAACACGGCGGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:567867..574085+ >mRNA_E-siliculosus-1a_M_contig88.16843.1 ID=mRNA_E-siliculosus-1a_M_contig88.16843.1|Name=mRNA_E-siliculosus-1a_M_contig88.16843.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:567867..574085+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGCTTGGAGCCCCTCTGATCGGCGGCGGCGGGAGCGGCAGTGCGTCTTA CGATGCGCTGTTCCAGGGACTTGTCGGCAGCGGCTGCATCGCGGGGCTGG CCCTGCTGGATGCCTCGCGAGGACGGCCGCTGTACGAGAACCGACTTGAC GACCGCTTGCCCCGCCCTCCTCCCGCCGCCGGCGCAGCAGCAGCTGCAAC AGCAACAGCAGCAGCAGCTGCAGCAGCAACAGCAGCTGGAGCAGCAACAG CAACAGCAGCAGCAAGGAAGGATAACAAGGATGACGAGATGGAAGTAGTA GGCGCAAGAGGTGGAGGAGAAGGGCCCGGCCACCGCTACGGGTTGGTGTC TTCTTCCGAAGGACAGCGGCTGATGCTTGGAGCCCCTCTGATCGGCGGCG GCGGGAGCGGCAGTGCGTCTTACGATGCGCTGTTCCAGGGACTTGTCGGC AGCGGCTGCATCGCGGGGCTGGCCCTGCTGGATGCCTCGCGAGGACGGCC GCTGTACGAGAACCGACTTGACGACCGCTTGCCCCGCCCTCCTCCCGCCG CCGGCGCAGCAGCAGCTGCAACAGCAACAGCAGCAGCAGCTGCAGCAGCA ACAGCAGCTGGAGCAGCAACAGCAACAGCAGCAGCAAGGAAGGATAACAA GGATGACGAGATGGAAGTAGTAGGCGCAAGAGGTGGAGGAGAAGGGCCCG GCCACCGCTACGGGTTGGTGTCTTCTTCCGAAGGACAGCGGCTGGTGGCG GCCGTGAAAAACTTGACGGATGATAATGACGCCCTCCTCTGCCGCCAGCA AGAAGAGCAGCCCCTGACGTGCATGGGGGTACCGTTCCGGGTATTCGGCG GGACCCCCCTCGGCATCTACGCGGTCGGTCCCGGCAGGAGGGTCGGGTTG ATCGTGCGAGCCCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCTACCGGTG GCGGCCGTGAAAAACTTGACGGATGATAATGACGCCCTCCTCTGCCGCCA GCAAGAAGAGCAGCCCCTGACGTGCATGGGGGTACCGTTCCGGGTATTCG GCGGGACCCCCCTCGGCATCTACGCGGTCGGTCCCGGCAGGAGGGTCGGG TTGATCGTGCGAGCCCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCTACCG GCGGCCTCATCTGCCTCAGAAGGTGGTCGGGGAAGTAGAGAGGTTCGTGG ACGACTTCTGGGCAGGCACCCAAGGCCGCGCGGTTAGGTCGCCACTACCA CCACCACCACCACCACCACCACCACCACCACCCCGATCATCGTCAACACG GCGGTGAGCGGCCTCATCTGCCTCAGAAGGTGGTCGGGGAAGTAGAGAGG TTCGTGGACGACTTCTGGGCAGGCACCCAAGGCCGCGCGGTTAGGTCGCC ACTACCACCACCACCACCACCACCACCACCACCACCACCCCGATCATCGT CAACACGGCGGTGA back to top
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