mRNA_E-siliculosus-1a_M_contig88.16818.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16818.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16818.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16818.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 8.110e-27
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 2 
Query:  542 LGLLSGEAVAEAXXXXXXXXXXXXXXTEEAQIGAGEAVGSVSGSRGISSLDNAPEEQQQPQQRPDSPFSATVSRAVSSSYPAVGAPVARSS 814
            LGLLSGEAVAEA XXXXXXXXXXXXX EEAQ+GAGEAVGSVSGSRGISSLDN PEE+QQPQQ+PDSPFSATVSRAVSSSYPAVGAPVARSS
Sbjct:   61 LGLLSGEAVAEAAXXXXXXXXXXXXX-EEAQVGAGEAVGSVSGSRGISSLDNTPEERQQPQQQPDSPFSATVSRAVSSSYPAVGAPVARSS 150
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE8.110e-2793.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:314322..317042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size630
Model size819
Exons2
Ec32 orthologEc-16_002360.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16818.1prot_E-siliculosus-1a_M_contig88.16818.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 316413..317042 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936342.1607988-UTR-E-siliculosus-1a_M_contig88:314321..3144831622936342.1607988-UTR-E-siliculosus-1a_M_contig88:314321..314483Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 314322..314483 +
1696251034.1646538-UTR-E-siliculosus-1a_M_contig88:314321..3144831696251034.1646538-UTR-E-siliculosus-1a_M_contig88:314321..314483Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 314322..314483 +
1622936342.1746204-UTR-E-siliculosus-1a_M_contig88:316387..3164121622936342.1746204-UTR-E-siliculosus-1a_M_contig88:316387..316412Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 316388..316412 +
1696251034.1743698-UTR-E-siliculosus-1a_M_contig88:316387..3164121696251034.1743698-UTR-E-siliculosus-1a_M_contig88:316387..316412Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 316388..316412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936342.251769-CDS-E-siliculosus-1a_M_contig88:316412..3170421622936342.251769-CDS-E-siliculosus-1a_M_contig88:316412..317042Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 316413..317042 +
1696251034.185264-CDS-E-siliculosus-1a_M_contig88:316412..3170421696251034.185264-CDS-E-siliculosus-1a_M_contig88:316412..317042Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 316413..317042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16818.1

>prot_E-siliculosus-1a_M_contig88.16818.1 ID=prot_E-siliculosus-1a_M_contig88.16818.1|Name=mRNA_E-siliculosus-1a_M_contig88.16818.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=210bp
MAAARVSVRPAALATTTVDEGVGGGVLFGDGRASATAAAVAQAATDAAMM
PPPLSPPSPSRQQQQLQQLQGEGRREGSRSAPLVVIDLEDEEEEEEEDEE
EEEEEEEDASNNDDDDDDLGLLSGEAVAEAAELAAAAAAATPATTEEAQI
GAGEAVGSVSGSRGISSLDNAPEEQQQPQQRPDSPFSATVSRAVSSSYPA
VGAPVARSSS
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mRNA from alignment at E-siliculosus-1a_M_contig88:314322..317042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16818.1 ID=mRNA_E-siliculosus-1a_M_contig88.16818.1|Name=mRNA_E-siliculosus-1a_M_contig88.16818.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2721bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:314322..317042+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCACAACCATAGTACGTAGTATATACACCAAGGATTGTCGGCAGCAAAGG
AGGAGGGCATTGCTAGCTAGCTGTCTACGTGTGGAGAGGGGTCGTGGCAG
CTGGCTGTGCAAGCGTCGACGCAGGACCAACGGGAGAGCAGCACACTTTT
GACATCTTGCTGGTGAGTTTAGAGTATTTGGCAAGATACATCACCGGCGG
CGCCGGGGGCCCTGGGCGATCGAGGCGTGCCTGCCTTGTCTATGCGCTTG
TCGTGCTGAGATAGGTCATCAGCAGCAGAGTAGGGTGGTGGTGGTGGTGG
TGTGCTTCTCTGTCGGGGCTAGTCGAGAGAGGCAGGAAGCCCGCAGCTGT
GAGATCCGTACAGCGTGAGTGTGCACGAACCCCGCAGGAAAATACTTTTT
TTCTCGGTACCGCTGCTGTTGTATCGCATTCTCTTCGTGTTCGTGCATGG
TAGTAGCTTTTGTTGGCCGCAACAACAATCATGCCCCTCGTCCTCACATA
CAACAGGAACGAGCAACAATGACTGGTTAACCTCTACCACCGCGTAGCAC
ACCTTGGCCATTCAGTGGTAATGGTGTGGAAGGTGTGTGTACTACACTGC
AGATTTTGAGGAAAGATTTTTTTTGCGAGATCAAGGCGAGATGGGCATAT
CTTTCGCGCGCTTTTCTTTCGCCCCCCGGATGCAGGAATACACACACACA
CACATCCTTTGCATCTGCTGCCGATGCTGTGTAGCCTTAACCAGACTCAA
AATATACTCAGTACCCAGCATGTCTTCTTCCCTCCTCGCTGCAAAGGGTT
CAACACACTCCTTCGGCTGCTGTGGTATTCTCTGGCATGGGATGTGCGTC
CTTGATTGTGTACGTACACATAGCAGTCCCATGCGTATTTCCTAAGAAAT
TATTGTTGTTTTTGTTGCTGTCATCACCCTGCCACACCGCTATTCCATCG
TGTGCAACATCCAACCCGTGGAAAATAGCATGCGATCATCTCCTGCTTGC
TTCAGTCTTCCTCGCTTGAGATTGATCGCGTGCCAGTCGCTCTCTCGTGA
CGTTGGTTTGGGCTGCTCTCGCATGCCTTGTGTTGTTTTGTTTGCTGTCG
CATCGTCAATCTCTACGTGCGCAAATGTAGTACGAATCTATGCAACAGCT
GGAGTAATAATTCTTCGTTGTCTTGTCTCACCCACGACCGTGGCAAACAG
GTGCACCTTCATCTGCTCGTTGTGTGCACATGTGTATATGCAGGGCTTGC
TCTCCCGACGTGTTTTGATAGTTTCGGTAAACAGAGACCCCGGATTTATG
CAAAGCACCAACCATCCTTTCATGTCGAGCATTCCAACCGTCTGTGTTTT
CTGTGTTGGTTTCGCGTCCAGGGACGTGACTTCCGCTAGTCGTGAGAAAA
TCACCGCTCATAAGTGACGATTGATATGCATTGCATTGCGCGCGTGTGTG
TAGCGGAAACGTGCCGCTGGCTCGGGGCGAGGTTGGGAACGAGGATGCCG
ATTCATCAAGAAGTAAAACCCCTCTCCCTCTTGTTTTCTGCTGAATCTCC
CAACCGATATCCGATGTTTCTTCTGACGCCAACTCTCTCGCAGCGCAGAA
CAACGACACCCGCTACACACCACCCACCAGCCTTCCTCCTGTTCGTGCTC
ACTCATGTGCCGAGCGCCGCACGCGCTCGTCCCTATGTCCGATCACCGTG
AACTCGCCGGCGCTATTCGCGACTTATCACCCCTCCCCTCTCTGCGCCAA
TCGAAGACGGATGGTGACGTCCGGTCCTCCCTTGCGCTCCCCATGAATTT
GTTCGCCCGCGACTATAGCTGAAAACGCCCTCCAAAGAGGCGGAATTCTC
AATTCATTCATCCATCCTCAAAAGATGAGCCGGCCCCACCTTTGTGCGGG
CGCGTTTACCCCTGAGAAGTGATGCTCTTCACCGCCACCGCCGCCGTTGC
TCTACCACTATCCTACCCTGTGTTCCCTCTGACGGAGTGCGGTTCCTTCC
TCTCCTCTCCCTCTTGTGCCCTCCGGTCCGGCCTTTCGTTTCCGCCAAAA
AAAAAAACGAAAGCAGAAGCGAGCGAGCACGTCAACGAACAATGGCTGCT
GCTCGGGTGTCTGTTAGGCCGGCGGCATTGGCGACGACGACGGTGGACGA
GGGCGTCGGGGGGGGCGTCTTGTTCGGCGACGGTCGGGCCTCAGCGACAG
CGGCGGCGGTTGCACAGGCGGCGACGGACGCTGCGATGATGCCACCGCCG
CTATCGCCGCCGTCTCCGTCTCGTCAGCAGCAGCAGCTGCAGCAGCTGCA
GGGAGAGGGGAGAAGGGAGGGCAGTCGTTCGGCGCCGCTGGTAGTCATAG
ACCTTGAGGACGAGGAGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGAG
GAGGAGGAGGAGGACGCGTCCAATAACGATGATGACGACGACGACCTCGG
TCTGCTGTCGGGGGAGGCGGTGGCAGAGGCGGCGGAACTAGCGGCGGCGG
CGGCGGCGGCGACGCCCGCGACAACCGAGGAGGCACAAATCGGGGCAGGC
GAAGCTGTGGGCAGCGTTAGCGGCAGCCGCGGCATCAGCAGCCTCGACAA
CGCCCCGGAAGAGCAGCAACAGCCGCAGCAACGGCCGGATAGTCCATTTT
CAGCGACCGTTTCCCGGGCTGTTTCGTCTTCGTACCCCGCCGTTGGTGCA
CCCGTGGCTCGGAGCAGCAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:314322..317042+

>mRNA_E-siliculosus-1a_M_contig88.16818.1 ID=mRNA_E-siliculosus-1a_M_contig88.16818.1|Name=mRNA_E-siliculosus-1a_M_contig88.16818.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:314322..317042+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTGCTGCTCGGGTGTCTGTTAGGCCGGCGGCATTGGCGACGACGAC
GGTGGACGAGGGCGTCGGGGGGGGCGTCTTGTTCGGCGACGGTCGGGCCT
CAGCGACAGCGGCGGCGGTTGCACAGGCGGCGACGGACGCTGCGATGATG
CCACCGCCGCTATCGCCGCCGTCTCCGTCTCGTCAGCAGCAGCAGCTGCA
GCAGCTGCAGGGAGAGGGGAGAAGGGAGGGCAGTCGTTCGGCGCCGCTGG
TAGTCATAGACCTTGAGGACGAGGAGGAGGAGGAGGAGGAGGACGAGGAG
GAGGAGGAGGAGGAGGAGGAGGACGCGTCCAATAACGATGATGACGACGA
CGACCTCGGTCTGCTGTCGGGGGAGGCGGTGGCAGAGGCGGCGGAACTAG
CGGCGGCGGCGGCGGCGGCGACGCCCGCGACAACCGAGGAGGCACAAATC
GGGGCAGGCGAAGCTGTGGGCAGCGTTAGCGGCAGCCGCGGCATCAGCAG
CCTCGACAACGCCCCGGAAGAGCAGCAACAGCCGCAGCAACGGCCGGATA
GTCCATTTTCAGCGACCGTTTCCCGGGCTGTTTCGTCTTCGTACCCCGCC
GTTGGTGCACCCGTGGCTCGGAGCAGCAGCATGGCTGCTGCTCGGGTGTC
TGTTAGGCCGGCGGCATTGGCGACGACGACGGTGGACGAGGGCGTCGGGG
GGGGCGTCTTGTTCGGCGACGGTCGGGCCTCAGCGACAGCGGCGGCGGTT
GCACAGGCGGCGACGGACGCTGCGATGATGCCACCGCCGCTATCGCCGCC
GTCTCCGTCTCGTCAGCAGCAGCAGCTGCAGCAGCTGCAGGGAGAGGGGA
GAAGGGAGGGCAGTCGTTCGGCGCCGCTGGTAGTCATAGACCTTGAGGAC
GAGGAGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGA
GGACGCGTCCAATAACGATGATGACGACGACGACCTCGGTCTGCTGTCGG
GGGAGGCGGTGGCAGAGGCGGCGGAACTAGCGGCGGCGGCGGCGGCGGCG
ACGCCCGCGACAACCGAGGAGGCACAAATCGGGGCAGGCGAAGCTGTGGG
CAGCGTTAGCGGCAGCCGCGGCATCAGCAGCCTCGACAACGCCCCGGAAG
AGCAGCAACAGCCGCAGCAACGGCCGGATAGTCCATTTTCAGCGACCGTT
TCCCGGGCTGTTTCGTCTTCGTACCCCGCCGTTGGTGCACCCGTGGCTCG
GAGCAGCAGC
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